BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62] (428 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 428 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/428 (100%), Positives = 428/428 (100%) Query: 1 MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60 MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN Sbjct: 1 MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60 Query: 61 ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120 ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS Sbjct: 61 ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120 Query: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN Sbjct: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180 Query: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS Sbjct: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240 Query: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV Sbjct: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300 Query: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH Sbjct: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360 Query: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN Sbjct: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420 Query: 421 NSANMVMV 428 NSANMVMV Sbjct: 421 NSANMVMV 428 >gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 238 KSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCS 297 +S + L G ++ + S ++GE+S I + +G D + H NT S Sbjct: 305 RSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTS 364 Query: 298 TSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQ 357 V + I S ++G V V A S ++LL N + P +E Sbjct: 365 RIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCN 424 Query: 358 CGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411 H AT S I+ EHL+Y + RGI + A +++ + F+ E+++ L ++F++E Sbjct: 425 LEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLP---MEFAVE 475 >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%) Query: 69 KNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTD 117 KN + LQ Y+P DS+ +Q ++K+K E++P S I+NT+ Sbjct: 615 KNFLVRLQ--YQP--GDSV----AQTRVLEMVKKKITEIVPLSTIQNTE 655 >gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 364 ISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLN-----DQVLQFSIEEIL 414 I DI P H L + + AC + E+ DLN DQ +F +E++L Sbjct: 71 ICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQ--RFQMEQLL 124 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 23.1 bits (48), Expect = 8.7, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 392 AFMSEIVEDLNDQVLQFS 409 AF+ EIVE N+ + FS Sbjct: 464 AFLKEIVETFNNSITDFS 481 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.133 0.379 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,177 Number of Sequences: 1233 Number of extensions: 11244 Number of successful extensions: 32 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 10 length of query: 428 length of database: 328,796 effective HSP length: 76 effective length of query: 352 effective length of database: 235,088 effective search space: 82750976 effective search space used: 82750976 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)