BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
         (428 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 428

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/428 (100%), Positives = 428/428 (100%)

Query: 1   MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60
           MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN
Sbjct: 1   MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60

Query: 61  ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120
           ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS
Sbjct: 61  ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120

Query: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180
           YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN
Sbjct: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180

Query: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240
           SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS
Sbjct: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240

Query: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300
           LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV
Sbjct: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300

Query: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360
           IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH
Sbjct: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360

Query: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420
           GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN
Sbjct: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420

Query: 421 NSANMVMV 428
           NSANMVMV
Sbjct: 421 NSANMVMV 428


>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 489

 Score = 62.0 bits (149), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 238 KSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCS 297
           +S +    L  G  ++ +  S  ++GE+S      I + +G    D    + H   NT S
Sbjct: 305 RSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTS 364

Query: 298 TSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQ 357
             V + I    S   ++G V V   A  S      ++LL  N    +  P +E       
Sbjct: 365 RIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCN 424

Query: 358 CGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411
             H AT S I+ EHL+Y + RGI +  A +++ + F+ E+++ L    ++F++E
Sbjct: 425 LEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLP---MEFAVE 475


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 25.4 bits (54), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)

Query: 69  KNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTD 117
           KN +  LQ  Y+P   DS+    +Q     ++K+K  E++P S I+NT+
Sbjct: 615 KNFLVRLQ--YQP--GDSV----AQTRVLEMVKKKITEIVPLSTIQNTE 655


>gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 23.9 bits (50), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 364 ISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLN-----DQVLQFSIEEIL 414
           I DI P H   L    +  + AC       + E+  DLN     DQ  +F +E++L
Sbjct: 71  ICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQ--RFQMEQLL 124


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 23.1 bits (48), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 392 AFMSEIVEDLNDQVLQFS 409
           AF+ EIVE  N+ +  FS
Sbjct: 464 AFLKEIVETFNNSITDFS 481


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,177
Number of Sequences: 1233
Number of extensions: 11244
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 428
length of database: 328,796
effective HSP length: 76
effective length of query: 352
effective length of database: 235,088
effective search space: 82750976
effective search space used: 82750976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)