HHsearch alignment for GI: 254781062 and conserved domain: COG1103
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only].
Probab=99.91 E-value=8.4e-25 Score=175.95 Aligned_cols=346 Identities=17% Similarity=0.225 Sum_probs=224.8
Q ss_pred CCCEEEEECCC-CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 78659976688-88989899999999998614986602679999999999999999999828797654334687689876
Q gi|254781062|r 21 KKPLIYFDNAA-SAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN 99 (406)
Q Consensus 21 ~~~~iYld~a~-~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n 99 (406)
T Consensus 14 ~r~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D---~~R~t~GARe~Kf 90 (382)
T COG1103 14 TRGFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD---EVRVTAGAREAKF 90 (382)
T ss_pred HCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEECCCCHHHHH
T ss_conf 4176034723406868799999999864886344310457411025885888999889871986---3442365125679
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHCCC-------CCCCCCC
Q ss_conf 543223444320134434540110000100001222232222222222--2221025788751023-------3443322
Q gi|254781062|r 100 LVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPID--NQGFFHIDEFKNRLTE-------RTKLIAI 170 (406)
Q Consensus 100 ~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~--~~g~id~~~l~~~i~~-------~t~lv~i 170 (406)
T Consensus 91 avMhal----~~~gd~vV~D~~aHYttyv----AAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lall 162 (382)
T COG1103 91 AVMHAL----CKEGDWVVVDSLAHYTTYV----AAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALL 162 (382)
T ss_pred HHHHHH----CCCCCEEEECCCCHHHHHH----HHHHCCCEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999975----1589889974742278899----99863975896678999845766888899999998624898448999
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCEEE
Q ss_conf 22222233333332100023444431012332000111000011001122234322-23544431000256663100121
Q gi|254781062|r 171 THMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKESRLNEMDPF 249 (406)
Q Consensus 171 ~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~~p~ 249 (406)
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~ 242 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRR 242 (382)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCEEEECCCCCHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 63577757722167899999872995685121022321136655678779724853001148704775136777899863
Q ss_pred CCCCEEEEEEECCCCCCCCCHH--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 1453034332024530033100--00012212024566421012332222222222222222222222222210132268
Q gi|254781062|r 250 MGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNE 327 (406)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~--r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~ 327 (406)
T Consensus 243 S-g---------~~~~~KEvellGCT~rGap----ivTlmASfP~V~e--RVkrWdeEv~kaR~fv~elEkigg~~qlG~ 306 (382)
T COG1103 243 S-G---------RAFPKKEVELLGCTVRGAP----IVTLMASFPHVVE--RVKRWDEEVEKARWFVAELEKIGGVKQLGE 306 (382)
T ss_pred C-C---------CCCCCCEEEEECCCCCCCH----HHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1-5---------4465332566143246843----8998740779999--998788999999999999997430887177
Q ss_pred CCCCCCEEEEEECCC---------CHHHHHHHHHHCCCE-EEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 521586799980899---------999999999878969-9975211278899728995799993588899999999999
Q gi|254781062|r 328 SLEDSPIISFRLGNI---------HPYDLALFLDGEGIA-IRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIET 397 (406)
Q Consensus 328 ~~~~~~iv~~~~~~~---------~~~~v~~~L~~~gI~-v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~ 397 (406)
T Consensus 307 rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G------------~Tk~~K~sv-yGl~~Eqve~V~~a 373 (382)
T COG1103 307 RPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPG------------QTKYFKLSV-YGLSWEQVEYVVDA 373 (382)
T ss_pred CCCCCCEEEECCCHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCC------------CEEEEEEEE-ECCCHHHHHHHHHH
T ss_conf 97656425533712899987576785466898876586650667------------513788875-05779999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999719
Q gi|254781062|r 398 LKKSIQFFQ 406 (406)
Q Consensus 398 l~~~i~~l~ 406 (406)
T Consensus 374 fkeI~eky~ 382 (382)
T COG1103 374 FKEIAEKYG 382 (382)
T ss_pred HHHHHHHCC
T ss_conf 999998619