HHsearch alignment for GI: 254781062 and conserved domain: PRK00854
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed.
Probab=99.81 E-value=5.7e-19 Score=139.20 Aligned_cols=327 Identities=17% Similarity=0.230 Sum_probs=198.6
Q ss_pred EEEEECCCC------CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 599766888------89898999999999986149866026799999999999999999998287976543346876898
Q gi|254781062|r 24 LIYFDNAAS------AQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATES 97 (406)
Q Consensus 24 ~iYld~a~~------~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~ 97 (406)
T Consensus 44 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~-~~~~---~---~~~~~l~~~l~~~~~~---~~v~f~~SGsEA 113 (404)
T PRK00854 44 RRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTS-RAFR---N---DQLAPLYEELAALTGS---HKVLPMNSGAEA 113 (404)
T ss_pred CEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCCC---C---HHHHHHHHHHHHCCCC---CEEEECCCHHHH
T ss_conf 9998826299977542797999999999985678655-5426---5---7999999999740376---848855877999
Q ss_pred HHHHHHHHHHH-H----HHCCC-CCCCCHHHHHHHHHHCCCCCC----CCCC-----CCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 76543223444-3----20134-434540110000100001222----2322-----22222222222102578875102
Q gi|254781062|r 98 INLVSYGWGAR-H----ISTGD-EIVLSVMEHHSNIIPWYFLRQ----RRGA-----SLVWVPIDNQGFFHIDEFKNRLT 162 (406)
Q Consensus 98 ~n~~~~~~~~~-~----~~~gd-~Vi~s~~eh~s~~~~~~~~~~----~~G~-----~v~~i~~~~~g~id~~~l~~~i~ 162 (406)
T Consensus 114 ve~AiklAr~~~~~~~g~~tgr~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~p~-----~d~~~l~~~~~ 188 (404)
T PRK00854 114 VETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFAPGFRVVPF-----GDAAALEAAIT 188 (404)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-----CCHHHHHHHHC
T ss_conf 9999999999876503787898559996456678601354346774335688899998155056-----66899998639
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCC-CCCCC----CCHHHHCCCCCCCCCCC-CCCC-C
Q ss_conf 33443322222222333333----3210002344443101233200-01110----00011001122234322-2354-4
Q gi|254781062|r 163 ERTKLIAITHMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQG-SVHNF----VDVQDIDCDWYIITGHK-LYGP-S 231 (406)
Q Consensus 163 ~~t~lv~i~~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~-~g~~~----id~~~~~~D~~~~S~hK-~~Gp-~ 231 (406)
T Consensus 189 ~~~aAviiEPiqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TGfGRtG~~fa~e~~gv~PDii~~g--Kgl~gG~~ 266 (404)
T PRK00854 189 PNTVAFLIEPIQGEAGVIIPPAGYFRRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFY 266 (404)
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEC--CCCCCCCC
T ss_conf 8748999917757789617998999999999997076445750001786355741455424897989756--44458876
Q ss_pred CCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43100025666310012114530343320245300331000001221202456642101233222222222222222222
Q gi|254781062|r 232 GIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARY 311 (406)
Q Consensus 232 G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~ 311 (406)
T Consensus 267 Pl~av~~~~~i~~~~~~~~h~~-----------T~----------~gnpla~aaa~a~l~~i~~---e~l~~~~~~~g~~ 322 (404)
T PRK00854 267 PVSAVLSNSEVLGVLRPGQHGS-----------TF----------GGNPLACAVARAALRVLVE---EGMIENAAEQGAY 322 (404)
T ss_pred CCCEEECCHHHHHHCCCCCCCC-----------CC----------CCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_conf 5320204799995067988778-----------88----------9898999999999999986---5899999999999
Q ss_pred CCCCCCCCCEEEECCCCCCCCCEEEEEECC--CCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHH
Q ss_conf 222222221013226852158679998089--999999999987896999752112788997289957999935888999
Q gi|254781062|r 312 VRSRLKEVRGMQLVNESLEDSPIISFRLGN--IHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYE 389 (406)
Q Consensus 312 l~~~L~~~~g~~i~~~~~~~~~iv~~~~~~--~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~e 389 (406)
T Consensus 323 l~~~L~~l~~-~~i~~VRG~Glm~gve~~~~~~~~~~~~~~~~~~Gll~~~~------------~~~~ir~~PPL~it~~ 389 (404)
T PRK00854 323 FLEGLRAIRG-NIVREVRGRGLMLAVELEPEAGGARQYCEALKARGLLAKDT------------HDHTIRLAPPLVITRE 389 (404)
T ss_pred HHHHHHHCCC-CCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHCCEEECCC------------CCCEEEEECCCCCCHH
T ss_conf 9999985048-97276644455999998556677999999999799598748------------9998999799578999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999997
Q gi|254781062|r 390 EADKFIETLKKSIQF 404 (406)
Q Consensus 390 did~~i~~l~~~i~~ 404 (406)
T Consensus 390 eid~~l~~l~~~Lah 404 (404)
T PRK00854 390 QVDWAVSQIAKVLAH 404 (404)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999668