HHsearch alignment for GI: 254781062 and conserved domain: PRK03715
>PRK03715 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.77 E-value=3.5e-17 Score=127.95 Aligned_cols=332 Identities=14% Similarity=0.170 Sum_probs=190.6
Q ss_pred EEEECCC------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9976688------8898989999999999861498660267999999999999999999982879765433468768987
Q gi|254781062|r 25 IYFDNAA------SAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESI 98 (406)
Q Consensus 25 iYld~a~------~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~ 98 (406)
T Consensus 37 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~Q~~~l~-~~~~~--~~~~---~~~~la~-~L~~~---~~~~~v~f~~sGsEAv 106 (395)
T PRK03715 37 RYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI-NPSPA--FYNE---PMAKLAG-LLTQH---SCFDKVFFANSGAEAN 106 (395)
T ss_pred EEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCC--CCCH---HHHHHHH-HHHCC---CCCCEEEEECCHHHHH
T ss_conf 998823178877745896999999999997547-67732--0278---9999999-98415---5888799818758899
Q ss_pred HHHHHHHHH--HHHHCCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 654322344--4320134-434540110000100001222232222222222----222102578875102334433222
Q gi|254781062|r 99 NLVSYGWGA--RHISTGD-EIVLSVMEHHSNIIPWYFLRQRRGASLVWVPID----NQGFFHIDEFKNRLTERTKLIAIT 171 (406)
Q Consensus 99 n~~~~~~~~--~~~~~gd-~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~----~~g~id~~~l~~~i~~~t~lv~i~ 171 (406)
T Consensus 107 E~AlKlAr~y~~~~~~gr~~ii~~~~~yHG~T~~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~aAviiE 186 (395)
T PRK03715 107 EGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLE 186 (395)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEE
T ss_conf 99999999986246899845999757889874022104686444556789889967555455899997349980799993
Q ss_pred CCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCC-CCCC----CCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCCC
Q ss_conf 22222333333----3210002344443101233200-0111----000011001122234322-235444310002566
Q gi|254781062|r 172 HMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQG-SVHN----FVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKES 241 (406)
Q Consensus 172 ~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~-~g~~----~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~~ 241 (406)
T Consensus 187 Piqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--Kgl~gG~Pl~av~~~~~ 264 (395)
T PRK03715 187 PVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELAGIEPDIMTLG--KGIGGGVPLAALLAKAE 264 (395)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEC--CHHHCCCCEEEEEECHH
T ss_conf 7888779852988999999999951897356201103888666853000489999989975--24428985289998267
Q ss_pred CCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 63100121145303433202453003310000012212024566421012332222222222222222222222222210
Q gi|254781062|r 242 RLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321 (406)
Q Consensus 242 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g 321 (406)
T Consensus 265 i~-~~~~---g~~--------g~T~----------~gnpla~aaa~a~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~ 319 (395)
T PRK03715 265 VA-VFEA---GDQ--------GGTY----------NGNPLMTAVGYAVISQLVA---PGFLEGVRARGEYLKEKLLELSA 319 (395)
T ss_pred HC-CCCC---CCC--------CCCC----------CCCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 42-4778---988--------8798----------9971899999999999962---68999999999999999998650
Q ss_pred EEECCCCCCCCCEEEEEECCCCHHH---HHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 1322685215867999808999999---9999987896999752112788997289957999935888999999999999
Q gi|254781062|r 322 MQLVNESLEDSPIISFRLGNIHPYD---LALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETL 398 (406)
Q Consensus 322 ~~i~~~~~~~~~iv~~~~~~~~~~~---v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l 398 (406)
T Consensus 320 ~~~i~~vRG~Gl~~~iel~~~~~~~~~~~~~~~~~~gll~~~~------------~~n~irl~PpL~it~~eid~~~~~l 387 (395)
T PRK03715 320 ERGLEGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP------------RPNLLRFMPALNVTTDEIDQMIAML 387 (395)
T ss_pred CCCCEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC------------CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 3991357435589999967887089999999998399899228------------9998999799438899999999999
Q ss_pred HHHHHHH
Q ss_conf 9999971
Q gi|254781062|r 399 KKSIQFF 405 (406)
Q Consensus 399 ~~~i~~l 405 (406)
T Consensus 388 ~~aL~~l 394 (395)
T PRK03715 388 RSVLDKL 394 (395)
T ss_pred HHHHHHH
T ss_conf 9999986