HHsearch alignment for GI: 254781062 and conserved domain: PRK05939
>PRK05939 hypothetical protein; Provisional.
Probab=99.88 E-value=1.9e-23 Score=167.46 Aligned_cols=299 Identities=17% Similarity=0.183 Sum_probs=176.9
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999982879765433468768987654322344432013443454011000010000122223222222222222210
Q gi|254781062|r 73 RDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFF 152 (406)
Q Consensus 73 R~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~i 152 (406)
T Consensus 52 e~~la~LEgg~~--a-~~~sSGMaAi~~~l~~l----l~~Gd~il~~~~~YG~t~~l~~~-l~~~GI~v~~vd~~----- 118 (396)
T PRK05939 52 EAKITEMEGGVG--T-VCFATGMAAIAAVFLTL----LRAGDHLVSSQYLFGNTNSLLGT-LQGLGVEVTMVDAT----- 118 (396)
T ss_pred HHHHHHHHCCCE--E-EEECCHHHHHHHHHHHH----CCCCCEEEECCCCCCHHHHHHHH-HHHCCEEEEEECCC-----
T ss_conf 999999829974--9-99657999999999983----58898899538869229999998-65318699998897-----
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 25788751023344332222222233333332100023444431012332000111000011001122234322235444
Q gi|254781062|r 153 HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSG 232 (406)
Q Consensus 153 d~~~l~~~i~~~t~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G 232 (406)
T Consensus 119 d~~~~~~ai~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~-~~Pl~~GaDivvhS~TKyi~Ghs 197 (396)
T PRK05939 119 DVQQVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLVYVVDNTMTSPWL-FRPKSVGASLVINSLSKYIAGHG 197 (396)
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHH-CCHHHHCCCEEEEECCCCCCCCC
T ss_conf 98999986185661899980899987075899999999983997999777630420-58556389889983433025887
Q ss_pred --CCHHHCCCCCCCCCE-EECCCCEEEEEEECCCCCCCCCHH-CC---C-CC-CCCCHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf --310002566631001-211453034332024530033100-00---0-12-21202456642101233222222222-
Q gi|254781062|r 233 --IGGLYSKESRLNEMD-PFMGGSEMIADVTQDMVTYADLPY-RF---E-PG-TPPISQAIALGVALDYVEKIDRKSIF- 302 (406)
Q Consensus 233 --~G~l~~~~~~~~~~~-p~~~g~~~~~~~~~~~~~~~~~~~-r~---e-~G-t~~~~~~~al~~al~~~~~~g~~~i~- 302 (406)
T Consensus 198 D~l~G~vv~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~~~r~lG~~l~p~~a--------~l~~rGL~TL~l 264 (396)
T PRK05939 198 NALGGAVTDTGLFDWSGYPNI-----FPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAA--------HRIAIGAETLAL 264 (396)
T ss_pred CEEEEEEECCCCCCHHHCCHH-----HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH--------HHHHCCCCCHHH
T ss_conf 747699965763203323113-----2454155287766899998888852787898999--------999826661889
Q ss_pred --CCCCCCCCCCCCCCCCCCEE-EECCCCC--------------CCCCEEEEEECCCCHHHHHHHHHHCC---CEEEECC
Q ss_conf --22222222222222222101-3226852--------------15867999808999999999998789---6999752
Q gi|254781062|r 303 --SYERELARYVRSRLKEVRGM-QLVNESL--------------EDSPIISFRLGNIHPYDLALFLDGEG---IAIRAGT 362 (406)
Q Consensus 303 --~~~~~l~~~l~~~L~~~~g~-~i~~~~~--------------~~~~iv~~~~~~~~~~~v~~~L~~~g---I~v~~G~ 362 (406)
T Consensus 265 Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~gg~~sf~l~~--~~~~~~f~~~l~l~~~a~SlGg 342 (396)
T PRK05939 265 RMDRSCSNALALATFLEGHPAVARVYYPGLASHPQHARATELFGAYGGLLSFELAD--GIDCFDFLNRLKLVIKATHLGD 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECC--HHHHHHHHHHCCCCEECCCCCC
T ss_conf 99999988999999986399957898999999944999998664886379999668--8999999980872467526576
Q ss_pred HH------H--------HHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11------2--------788997289-957999935888999999999999999997
Q gi|254781062|r 363 HC------A--------NPLLKFLGI-DSLCRASLAMYNTYEEADKFIETLKKSIQF 404 (406)
Q Consensus 363 ~c------a--------~~~~~~~g~-~~~iRiS~~~~nt~edid~~i~~l~~~i~~ 404 (406)
T Consensus 343 ~eSLi~~p~~t~h~~~~~e~r~~~Gi~~~liRlSvGl----Ed~~DLi~DL~qAL~a 395 (396)
T PRK05939 343 TRTLAIPVAHTIYYEMGAERRASMGIADSLIRVSVGI----EDTADLIADFEQALDA 395 (396)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEE----CCHHHHHHHHHHHHHC
T ss_conf 3321158621145238999998669791969999410----9999999999999846