HHsearch alignment for GI: 254781062 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.96 E-value=8.8e-31 Score=213.63 Aligned_cols=342 Identities=18% Similarity=0.238 Sum_probs=233.6
Q ss_pred CCCEEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 786599766-8888989899999999998614986-60267999999999999999999982879765433468768987
Q gi|254781062|r 21 KKPLIYFDN-AASAQKPQDVIDSIMCTYSHEYANI-HRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESI 98 (406)
Q Consensus 21 ~~~~iYld~-a~~~~~~~~V~~a~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~ 98 (406)
T Consensus 16 ~~~~in~~piq~gg~lt~ea~ka~~~~gdgysvcd~C~~--~LD~i~~Ppi~~f~~~la~flg~D~---~rlvnGar~g~ 90 (386)
T PRK09331 16 EEEMINLDPIQRGGRLTPEARKALIEYGDGYSVCDYCKG--RLDKIEKPPIADFHEDLAKFLGMDE---ARVTPGAREGK 90 (386)
T ss_pred HHCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCC--HHHCCCCCCHHHHHHHHHHHHCCCE---EEECCCCCHHH
T ss_conf 231335673552696899999999997488736645411--0112559988999999999849963---78528842789
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCHH----HHHHHHCCCC---CCCCC
Q ss_conf 654322344432013443454011000010000122223222222222--22221025----7887510233---44332
Q gi|254781062|r 99 NLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPI--DNQGFFHI----DEFKNRLTER---TKLIA 169 (406)
Q Consensus 99 n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~--~~~g~id~----~~l~~~i~~~---t~lv~ 169 (406)
T Consensus 91 qAv~~a~----c~~GD~VIl~rnaHyS~~~A~----elaG~~~~~v~~~~~~~~~I~~~~~~~~Iee~~~e~gk~~aL~l 162 (386)
T PRK09331 91 FAVMHAL----CKKGDYVVLDGLAHYTSYVAA----ERAGLNVREVPKTGYPDYRITPEAYAEKIEEVEDETGKPPALAL 162 (386)
T ss_pred HHHHHHH----HCCCCEEEECCCCHHHHHHHH----HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9999986----369997984484059999999----97598589936877723450800579999999986189855999
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCC-E
Q ss_conf 222222233333332100023444431012332000111000011001122234322-23544431000256663100-1
Q gi|254781062|r 170 ITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKESRLNEM-D 247 (406)
Q Consensus 170 i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~-~ 247 (406)
T Consensus 163 lt~pdy~yGn~~d~~~i~~iah~~~ip~lvdeA~~~~~~P~~a~~~GaD~~v~S~HK~~~s~t~sgvL~~~~e~~d~v~R 242 (386)
T PRK09331 163 LTHVDGNYGNLHDAKKIAKVAHQYGIPLLLNGAYTVGRMPVDGKELGADFIVGSGHKSMAASAPSGVLATTEEYADKVFR 242 (386)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 96888664454638999999987498189814433577897466639988986345444234631244304530155652
Q ss_pred EECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 21145303433202453003310000012212024566421012332222222222222222222222222210132268
Q gi|254781062|r 248 PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNE 327 (406)
Q Consensus 248 p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~ 327 (406)
T Consensus 243 ~s~----------~~~~Kev~mLgcTs~g~psy~LMASfd~vrerv~~------~d~ev~~ar~~~~El~kIeG~~~lge 306 (386)
T PRK09331 243 TSK----------KFGVKEVELLGCTLRGAPLVTLMASFPHVKERVKN------WDEEVEKARWFVDELEKIEGFKQLGE 306 (386)
T ss_pred CCC----------CCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 264----------30578998853633464089998065999999987------78999999999999860876554065
Q ss_pred CCCCCCEEEEEEC---------CCCHHHHHHHHHHCCCEEE-ECCHHHHHHHHHCCCCCEEEE-EECCCCCHHHHHHHHH
Q ss_conf 5215867999808---------9999999999987896999-752112788997289957999-9358889999999999
Q gi|254781062|r 328 SLEDSPIISFRLG---------NIHPYDLALFLDGEGIAIR-AGTHCANPLLKFLGIDSLCRA-SLAMYNTYEEADKFIE 396 (406)
Q Consensus 328 ~~~~~~iv~~~~~---------~~~~~~v~~~L~~~gI~v~-~G~~ca~~~~~~~g~~~~iRi-S~~~~nt~edid~~i~ 396 (406)
T Consensus 307 ~P~~hdl~~fdtt~~~~ia~~~~~~Gy~l~~~Lk~r~I~ge~sg------------~t~~lkl~s~G~--t~E~v~~li~ 372 (386)
T PRK09331 307 KPRNHDLMRFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG------------LTKEFKLSTYGL--TWEQVEYVAD 372 (386)
T ss_pred CCCCCCCEEECCCCEEEEHHHCCCCCEEHHHHHHHCCCEEEECC------------CCEEEEEEECCC--CHHHHHHHHH
T ss_conf 77877743533764122232048660567999976796499557------------101787886178--7899999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999971
Q gi|254781062|r 397 TLKKSIQFF 405 (406)
Q Consensus 397 ~l~~~i~~l 405 (406)
T Consensus 373 A~keIaeky 381 (386)
T PRK09331 373 SFKEIAEKY 381 (386)
T ss_pred HHHHHHHHH
T ss_conf 999999982