HHsearch alignment for GI: 254781062 and conserved domain: TIGR00474
>TIGR00474 selA L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.43 E-value=6.2e-14 Score=107.45 Aligned_cols=325 Identities=20% Similarity=0.247 Sum_probs=185.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99766888898989999999999861498660267999999999999999999982879765433468768987654322
Q gi|254781062|r 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYG 104 (406)
Q Consensus 25 iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~ 104 (406)
T Consensus 72 Tnl---Gra~~ae~v~~a~~~~~~~-~v~LEY~L~~~gRG~--R~~~i~~lLc~lTgae~-~cv--vnNna~avlL~l~~ 142 (448)
T TIGR00474 72 TNL---GRALFAEAVNEAISEAMRK-YVNLEYDLDEGGRGH--RDAHIEKLLCKLTGAED-ACV--VNNNAAAVLLMLAT 142 (448)
T ss_pred HHH---CCHHHHHHHHHHHHHHHCC-CCCCCEECCCCCCCH--HHHHHHHHHHHHCCCCC-CEE--EECHHHHHHHHHHH
T ss_conf 001---4436799999999998625-775311021157531--78999999875328623-304--42338999999999
Q ss_pred HHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf 34443201344345401---10000100001222232222222222222102578875102334433222222223--33
Q gi|254781062|r 105 WGARHISTGDEIVLSVM---EHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVL--GT 179 (406)
Q Consensus 105 ~~~~~~~~gd~Vi~s~~---eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~t--G~ 179 (406)
T Consensus 143 -----~a~GKeVi~srGEL~eiGg~fRipdi-m~~~g~~l~eVGttn~t--~~~Dy~~ai~~nTa~Lmkvh~sNf~~~gf 214 (448)
T TIGR00474 143 -----LAKGKEVIISRGELVEIGGAFRIPDI-MKQAGCELDEVGTTNRT--HVKDYRVAITENTALLMKVHLSNFKIVGF 214 (448)
T ss_pred -----HCCCCEEEEECCCCCCCCCCCCCHHH-HHHCCCEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -----60798799978865789875654488-96538565101101200--04467776531034444443016625652
Q ss_pred CCC--CCCEECCCCCCCCCCCCCCCCCC----CC--CCC---CHH---HHCCCCCCCCCCCC-CCCCCCCHHHCCCCCCC
Q ss_conf 333--32100023444431012332000----11--100---001---10011222343222-35444310002566631
Q gi|254781062|r 180 VIP--IKEICRIAHERNIPVLVDGSQGS----VH--NFV---DVQ---DIDCDWYIITGHKL-YGPSGIGGLYSKESRLN 244 (406)
Q Consensus 180 ~~p--i~~I~~~~~~~g~~~~vD~aq~~----g~--~~i---d~~---~~~~D~~~~S~hK~-~Gp~G~G~l~~~~~~~~ 244 (406)
T Consensus 215 t~~~~eeeLv~LG~~~~~pv~~D~gSG~LvdL~~~gL~~~eP~~~~~i~~G~dLVs~SgDKLLgGpq-aGiivGKKeli~ 293 (448)
T TIGR00474 215 TAKVKEEELVKLGKELDVPVVTDLGSGLLVDLSQYGLPKNEPNVQEAIALGVDLVSFSGDKLLGGPQ-AGIIVGKKELIE 293 (448)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCC-CCEEECCHHHHH
T ss_conf 1115778999732233770799877662122544166668897106886698578616510046765-034623078999
Q ss_pred CCE--EECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCC---------CCCCCCCCCC
Q ss_conf 001--21145303433202453003310000012212024566421012332--2222222---------2222222222
Q gi|254781062|r 245 EMD--PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVE--KIDRKSI---------FSYERELARY 311 (406)
Q Consensus 245 ~~~--p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~--~~g~~~i---------~~~~~~l~~~ 311 (406)
T Consensus 294 ki~~~p~kr~--------------------Lr~---dk~~LAGle~tLkly~~PEkl~E~ip~lr~ltr~~~~~~~~a~r 350 (448)
T TIGR00474 294 KIQIHPLKRA--------------------LRA---DKLTLAGLEATLKLYLNPEKLLEKIPTLRLLTRAKKFLRIKAER 350 (448)
T ss_pred HHHHCCCCEE--------------------HHC---CHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 9854786221--------------------012---41679999999974158024304421556530348899999999
Q ss_pred CCCCCCCCCE----EEECCC---------CCCCCCEEEEEECC--CCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCC
Q ss_conf 2222222210----132268---------52158679998089--99999999998789699975211278899728995
Q gi|254781062|r 312 VRSRLKEVRG----MQLVNE---------SLEDSPIISFRLGN--IHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDS 376 (406)
Q Consensus 312 l~~~L~~~~g----~~i~~~---------~~~~~~iv~~~~~~--~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~ 376 (406)
T Consensus 351 L~~~L~~~~~~~f~i~i~~~~~~~G~gs~p~~~~pt~~v~~~~~~~~G~~l~~L~~r~~~~~~-------pv---~GrPG 420 (448)
T TIGR00474 351 LEKELKAIDGAEFNIQIVKERAQIGSGSLPVERLPTIAVTILIEIGSGAKLENLSARYRILTI-------PV---IGRPG 420 (448)
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCC-------CE---EECCC
T ss_conf 888750356882268886205788974365322663231111110675127999986185677-------74---40777
Q ss_pred EE---EEEECC-CCCHHHHHHHHHHHHH
Q ss_conf 79---999358-8899999999999999
Q gi|254781062|r 377 LC---RASLAM-YNTYEEADKFIETLKK 400 (406)
Q Consensus 377 ~i---RiS~~~-~nt~edid~~i~~l~~ 400 (406)
T Consensus 421 a~~~~rl~Ld~R~~~~~D~~~i~~~l~e 448 (448)
T TIGR00474 421 AIKSGRLWLDLRDLERIDDNTILKTLVE 448 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7612421132567888879999998339