HHsearch alignment for GI: 254781062 and conserved domain: TIGR00713
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=99.39 E-value=4.3e-13 Score=102.12 Aligned_cols=321 Identities=15% Similarity=0.187 Sum_probs=182.2
Q ss_pred EEEECCCC-CC-----CCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99766888-89-----898999999999986149-866026799999999999999999998287976543346876898
Q gi|254781062|r 25 IYFDNAAS-AQ-----KPQDVIDSIMCTYSHEYA-NIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATES 97 (406)
Q Consensus 25 iYld~a~~-~~-----~~~~V~~a~~~~~~~~~~-n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~ 97 (406)
T Consensus 49 ~YIDyv~swGPLILGHahp~v~~Av~e~lerG~syG~PtE---------~Ei~lA~-~i~~~v~~~t~e~vRfVnSGTEA 118 (434)
T TIGR00713 49 EYIDYVLSWGPLILGHAHPKVVEAVKEALERGTSYGAPTE---------AEILLAK-EIISRVPSVTEEMVRFVNSGTEA 118 (434)
T ss_pred EEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH---------HHHHHHH-HHHHHCCCCCCCEEEEECCCCHH
T ss_conf 0012110000201178976899999999973012689988---------9999999-99864055546516862176488
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC-------------CCCCCCCCC------CCCCCCCCCCCHHHHHH
Q ss_conf 76543223444320134434540110000100001-------------222232222------22222222210257887
Q gi|254781062|r 98 INLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF-------------LRQRRGASL------VWVPIDNQGFFHIDEFK 158 (406)
Q Consensus 98 ~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~-------------~~~~~G~~v------~~i~~~~~g~id~~~l~ 158 (406)
T Consensus 119 TMsAvRLA--RG~TGR~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYN-----D~~a~~ 191 (434)
T TIGR00713 119 TMSAVRLA--RGFTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYN-----DLEALE 191 (434)
T ss_pred HHHHHHHH--HHCCCCCCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCC-----CHHHHH
T ss_conf 99999986--31058872788617641012320035452101046887788888701143113404517-----389999
Q ss_pred HHCC---CCCCCCCCCCCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCCCCCCCCC------HHHHCCCCCCCCCC
Q ss_conf 5102---33443322222222333333----32100023444431012332000111000------01100112223432
Q gi|254781062|r 159 NRLT---ERTKLIAITHMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQGSVHNFVD------VQDIDCDWYIITGH 225 (406)
Q Consensus 159 ~~i~---~~t~lv~i~~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~~g~~~id------~~~~~~D~~~~S~h 225 (406)
T Consensus 192 ~~f~~~G~~iAgvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~T-GFR-va~~GAQ~yfgV~PDl~~lG-- 267 (434)
T TIGR00713 192 EAFEEYGEEIAGVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVIT-GFR-VALGGAQEYFGVEPDLTTLG-- 267 (434)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCC-HHH-CCHHHCCHHCCCCCCCEEEC--
T ss_conf 99986798343788612025766648852235899999987295775502210-122-13321501137874103423--
Q ss_pred C-CCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCC--CHHHHHHHHHCCCCCCCCCC-CC
Q ss_conf 2-23544431000256663100121145303433202453003310000012212--02456642101233222222-22
Q gi|254781062|r 226 K-LYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPP--ISQAIALGVALDYVEKIDRK-SI 301 (406)
Q Consensus 226 K-~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~--~~~~~al~~al~~~~~~g~~-~i 301 (406)
T Consensus 268 KI~GGGlP~gA~gGrrEiM~~laP~--------------------G~vYQAGTlsGNPlam~AG~atLk~~~~---~~~~ 324 (434)
T TIGR00713 268 KIIGGGLPVGAFGGRREIMERLAPE--------------------GPVYQAGTLSGNPLAMAAGLATLKLLDE---EKGV 324 (434)
T ss_pred HHHCCCCCCEEECCCHHHHHHHCCC--------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCH
T ss_conf 3233764510122675688431788--------------------7744564355588999999999998534---8883
Q ss_pred CCCCCCCCCCCCCCCCCC---CEEEECCCCCCCCCEEEEEEC-C--CCHHH---------HH---HHHHHCCCEEEECCH
Q ss_conf 222222222222222222---101322685215867999808-9--99999---------99---999878969997521
Q gi|254781062|r 302 FSYERELARYVRSRLKEV---RGMQLVNESLEDSPIISFRLG-N--IHPYD---------LA---LFLDGEGIAIRAGTH 363 (406)
Q Consensus 302 ~~~~~~l~~~l~~~L~~~---~g~~i~~~~~~~~~iv~~~~~-~--~~~~~---------v~---~~L~~~gI~v~~G~~ 363 (406)
T Consensus 325 Y~~l~~~~~~L~~g~~e~l~~~gip~--~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL~~GVylpPS~F 402 (434)
T TIGR00713 325 YTELDELAKRLAEGLSEVLEDKGIPH--TVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEMLEKGVYLPPSQF 402 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 48999999999999999998279858--9950440045665778898788999886189889999999858887898721
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCHHHHH----HHHHHHHHHHHHH
Q ss_conf 12788997289957999935888999999----9999999999971
Q gi|254781062|r 364 CANPLLKFLGIDSLCRASLAMYNTYEEAD----KFIETLKKSIQFF 405 (406)
Q Consensus 364 ca~~~~~~~g~~~~iRiS~~~~nt~edid----~~i~~l~~~i~~l 405 (406)
T Consensus 403 ------Ea-----~F-~S--~AH~~E~i~yaq~~ti~a~~~~f~~~ 434 (434)
T TIGR00713 403 ------EA-----CF-IS--AAHTEEDIEYAQTNTIEAAEEVFAEL 434 (434)
T ss_pred ------HH-----HH-HC--CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ------15-----55-16--77772117899999999999998409