HHsearch alignment for GI: 254781062 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.55 E-value=1.2e-14 Score=111.91 Aligned_cols=316 Identities=18% Similarity=0.224 Sum_probs=206.1
Q ss_pred EEECCCC-CC--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9766888-89--89899999999998614986602679999999999999999999828797654334687689876543
Q gi|254781062|r 26 YFDNAAS-AQ--KPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVS 102 (406)
Q Consensus 26 Yld~a~~-~~--~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~ 102 (406)
T Consensus 7 lLDFsAninPlgpP~S~~aa~~~aLd~~~rYPD~--dY---------~hlrqA~AdH~q~~-~dwvl~gnG~~e~i~la~ 74 (349)
T TIGR01140 7 LLDFSANINPLGPPASVKAALAAALDALERYPDD--DY---------IHLRQALADHHQVA-ADWVLAGNGELESIRLAA 74 (349)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CH---------HHHHHHHHHHHCCC-CCCEECCCCCHHHHHHHH
T ss_conf 0324345788887602045898742787608884--31---------89999986541256-012545997278889988
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC--C-CCC-CC--HHHH--HHHHCCCCCCCCCCCCCC
Q ss_conf 22344432013443454011000010000122223222222222--2-222-10--2578--875102334433222222
Q gi|254781062|r 103 YGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPI--D-NQG-FF--HIDE--FKNRLTERTKLIAITHMS 174 (406)
Q Consensus 103 ~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~--~-~~g-~i--d~~~--l~~~i~~~t~lv~i~~~~ 174 (406)
T Consensus 75 ~t~----~~~Gd~~~V~~---P~-F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~~~dPseiA~l~A~~s~h~~lilctPn 146 (349)
T TIGR01140 75 ETL----VSRGDAVLVVA---PA-FAEYGRELELAGAELKTIRWSLDEADGWRVLRDPSEIALLDAVTSEHDLLILCTPN 146 (349)
T ss_pred HHC----CCCCCEEEEEC---CC-CHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 614----78887578708---87-02679999856981223457731688874557645665412688331353111767
Q ss_pred CCCCCCCC---CCCEECCCCCCCCCCCCCCCCCCCCCCC--------CHHHHCCCCCCC-CCCCCCCCCC--CCHHHCCC
Q ss_conf 22333333---3210002344443101233200011100--------001100112223-4322235444--31000256
Q gi|254781062|r 175 NVLGTVIP---IKEICRIAHERNIPVLVDGSQGSVHNFV--------DVQDIDCDWYII-TGHKLYGPSG--IGGLYSKE 240 (406)
Q Consensus 175 ~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~g~~~i--------d~~~~~~D~~~~-S~hK~~Gp~G--~G~l~~~~ 240 (406)
T Consensus 147 NPtG~l~~r~~l~A~a~rc~~~N~~LllDEA-F~dF~pPG~E~~l~p~l~~-~P~~~vlRSLTKfy~lPGLRlGylva~~ 224 (349)
T TIGR01140 147 NPTGDLLERDALRALADRCKAVNIELLLDEA-FLDFLPPGEETSLVPSLKD-TPNVVVLRSLTKFYALPGLRLGYLVAVD 224 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHC-CCCEEEECCHHHHHCCHHHHHHHHHCCC
T ss_conf 6989862247899999888874046666556-5157898644343413326-8978997111554025024454555166
Q ss_pred C-CCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-631001211453034332024530033100000122120245664210123322222222222222222222222222
Q gi|254781062|r 241 S-RLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV 319 (406)
Q Consensus 241 ~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~ 319 (406)
T Consensus 225 Da~la~~r~~r-----------------------~pW~vnalAaaag~~al~--~sef~q~tw~wl~~erar~~qaL~~l 279 (349)
T TIGR01140 225 DALLARLRAAR-----------------------RPWSVNALAAAAGAAALR--DSEFRQETWRWLAEERARLRQALADL 279 (349)
T ss_pred HHHHHHHHHHC-----------------------CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 17899999742-----------------------899877689999999876--67899999874366778999999717
Q ss_pred CEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 101322685215867999808999999999998789699975211278899728995-7999935888999999999999
Q gi|254781062|r 320 RGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDS-LCRASLAMYNTYEEADKFIETL 398 (406)
Q Consensus 320 ~g~~i~~~~~~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~-~iRiS~~~~nt~edid~~i~~l 398 (406)
T Consensus 280 P~l~v~Ps~---anfLLl~~~~~~~dl~~~llt~~~IliRdc-------~~fpgLds~~~RVAvR---t~a~N~rLlaAL 346 (349)
T TIGR01140 280 PLLDVYPSR---ANFLLLKVEREDVDLQEELLTKERILIRDC-------LSFPGLDSDYYRVAVR---TAAENDRLLAAL 346 (349)
T ss_pred CCCCCCCCC---CCCEEEECCCCCHHHHHHHHHHCCCCHHHC-------CCCCCCCCCEEEEEEC---CHHHHHHHHHHH
T ss_conf 887558888---761145458986889999987434100120-------5788888752788852---855478999996
Q ss_pred HHH
Q ss_conf 999
Q gi|254781062|r 399 KKS 401 (406)
Q Consensus 399 ~~~ 401 (406)
T Consensus 347 a~v 349 (349)
T TIGR01140 347 ADV 349 (349)
T ss_pred HCC
T ss_conf 139