HHsearch alignment for GI: 254781062 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=99.90 E-value=2.2e-24 Score=173.28 Aligned_cols=331 Identities=18% Similarity=0.218 Sum_probs=217.9
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8888989899999999998---614986602679999---9999999999999998287976543346876898765432
Q gi|254781062|r 30 AASAQKPQDVIDSIMCTYS---HEYANIHRGLHYMAN---AVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSY 103 (406)
Q Consensus 30 a~~~~~~~~V~~a~~~~~~---~~~~n~~~~~~~~~~---~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~ 103 (406)
T Consensus 20 gal~PPiy~TSTF~F~s~eqGGnrFAG~-e~Gy~YsRlgNPTv~~LE---~riA~LEg~EAa--vAt-~SGMgAi~A~l~ 92 (392)
T TIGR01328 20 GALTPPIYQTSTFVFESAEQGGNRFAGE-EEGYVYSRLGNPTVDLLE---RRIAELEGAEAA--VAT-ASGMGAIAATLL 92 (392)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCEEEECCCCCHHHHHH---HHHHHHHHHHHH--HHH-HHHHHHHHHHHH
T ss_conf 7768851324678888574055536674-366268526771377888---898754204677--887-512899999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23444320134434540110000100001222232222222222222102578875102334433222222223333333
Q gi|254781062|r 104 GWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPI 183 (406)
Q Consensus 104 ~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~~~pi 183 (406)
T Consensus 93 ~~----lkAgDh~i~d~~lYGCTfall~~~ltkfgi~v~f~~~~-----~pee~~a~i~dnT~ivYfETPaNPtm~liD~ 163 (392)
T TIGR01328 93 SL----LKAGDHVISDETLYGCTFALLEDALTKFGIDVKFVDMA-----SPEEVKAAIKDNTKIVYFETPANPTMKLIDL 163 (392)
T ss_pred HH----HHCCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEECCC-----CHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99----85287577438742014899873267737527983178-----7799998448997799986599875257759
Q ss_pred CCEECCCCCCC-CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC---CCHHHCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 21000234444-31012332000111000011001122234322235444---310002566631001211453034332
Q gi|254781062|r 184 KEICRIAHERN-IPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSG---IGGLYSKESRLNEMDPFMGGSEMIADV 259 (406)
Q Consensus 184 ~~I~~~~~~~g-~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G---~G~l~~~~~~~~~~~p~~~g~~~~~~~ 259 (406)
T Consensus 164 e~v~r~A~~~gG~kVivDNTfatP~lt~P-~alG~D~VVHSATKYigGHgDvVaG~~~G~~e~~q~iR~~g-----~KD~ 237 (392)
T TIGR01328 164 ELVVRVAHEKGGVKVIVDNTFATPYLTRP-VALGVDVVVHSATKYIGGHGDVVAGVLIGDAELLQRIRLVG-----VKDM 237 (392)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHCCH-HHCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHCCCC-----CCCC
T ss_conf 99999997529828998566277001380-36187768942412137612211221107756674401111-----0005
Q ss_pred ECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCCC---------
Q ss_conf 0245300331000001221202456642101233222222222222222222222222221013-226852---------
Q gi|254781062|r 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQ-LVNESL--------- 329 (406)
Q Consensus 260 ~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~-i~~~~~--------- 329 (406)
T Consensus 238 tG~V----iS---------PfdAwL~l-RGLkTL-~~----RM~rhsenA~kvAe~Lk~HPaVe~V~YPG~~~hp~hdia 298 (392)
T TIGR01328 238 TGAV----IS---------PFDAWLVL-RGLKTL-AV----RMKRHSENAEKVAEYLKEHPAVEKVYYPGLEEHPDHDIA 298 (392)
T ss_pred CCCE----EC---------HHHHHHHH-HHHHHH-HH----HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 6650----05---------57899997-436677-78----887730538999998523886021236887788874089
Q ss_pred -----CCCCEEEEEECCCC--HHHHHHHHHHCCCEEEECC------HHHHHHH--------HHCCC-CCEEEEEECCCCC
Q ss_conf -----15867999808999--9999999987896999752------1127889--------97289-9579999358889
Q gi|254781062|r 330 -----EDSPIISFRLGNIH--PYDLALFLDGEGIAIRAGT------HCANPLL--------KFLGI-DSLCRASLAMYNT 387 (406)
Q Consensus 330 -----~~~~iv~~~~~~~~--~~~v~~~L~~~gI~v~~G~------~ca~~~~--------~~~g~-~~~iRiS~~~~nt 387 (406)
T Consensus 299 akQM~~gGgm~~F~lKgg~a~~~k~~n~LkLIr~AVSLGdaEtLIQHPAsMTHavvp~eeR~aaGI~~gm~RlSvGl--- 375 (392)
T TIGR01328 299 AKQMKKGGGMLAFELKGGEADAKKLLNRLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGISEGMVRLSVGL--- 375 (392)
T ss_pred HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCH---
T ss_conf 99874048727754325668999998755576655312774200058764667898856784447664612230045---
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999971
Q gi|254781062|r 388 YEEADKFIETLKKSIQFF 405 (406)
Q Consensus 388 ~edid~~i~~l~~~i~~l 405 (406)
T Consensus 376 -Ed~~d~~ADl~~aL~~L 392 (392)
T TIGR01328 376 -EDVDDVLADLKQALDAL 392 (392)
T ss_pred -HHHHHHHHHHHHHHCCC
T ss_conf -26999999999852149