HHsearch alignment for GI: 254781062 and conserved domain: TIGR01822
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase; InterPro: IPR011282 This entry represents a narrowly defined clade of animal and bacterial (almost exclusively proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homologue from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.; GO: 0008890 glycine C-acetyltransferase activity.
Probab=99.81 E-value=5.8e-20 Score=145.44 Aligned_cols=325 Identities=20% Similarity=0.265 Sum_probs=222.7
Q ss_pred ECCCCC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 668888-9898999999999986149866026799999999999999999998287976543346876898765432234
Q gi|254781062|r 28 DNAASA-QKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWG 106 (406)
Q Consensus 28 d~a~~~-~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~ 106 (406)
T Consensus 47 ANNYLGLs~HP~~I~AA~~Al~~~GfGlsSVRFICGTQ--d~HK~LE~~iA~F~~~E--DtILY~sc-FDAN----gGlF 117 (395)
T TIGR01822 47 ANNYLGLSDHPDVIQAAKDALDEHGFGLSSVRFICGTQ--DLHKELEAKIAAFLGTE--DTILYASC-FDAN----GGLF 117 (395)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHHHHCCC--CHHHHHHH-HHCC----CCCC
T ss_conf 00005646755799999998874389513432121674--35689999999971653--04454566-6305----5422
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC------CCCCCCCCCCCCCCCCC
Q ss_conf 443201344345401100001000012222322222222222221025788751023------34433222222223333
Q gi|254781062|r 107 ARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE------RTKLIAITHMSNVLGTV 180 (406)
Q Consensus 107 ~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~------~t~lv~i~~~~~~tG~~ 180 (406)
T Consensus 118 E~LLg~eDAiiSDaLNHASIIDGvR-LCKAk--rYRY~~------~dm~dLe~~L~~A~~~Gar~~Li~tDGvFSMDG~i 188 (395)
T TIGR01822 118 ETLLGEEDAIISDALNHASIIDGVR-LCKAK--RYRYAN------NDMADLEAQLKEAQAAGARHRLIATDGVFSMDGTI 188 (395)
T ss_pred HHHCCCCCCCHHHHHCCCHHHHHHH-HHHHH--HHHHHC------CCHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCE
T ss_conf 0104754422102224310230035-42233--432305------88889999999999738958998646602068731
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCC---HHHH-----CCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCE----
Q ss_conf 3332100023444431012332000111000---0110-----01122234322-235444310002566631001----
Q gi|254781062|r 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVD---VQDI-----DCDWYIITGHK-LYGPSGIGGLYSKESRLNEMD---- 247 (406)
Q Consensus 181 ~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id---~~~~-----~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~~---- 247 (406)
T Consensus 189 A~L~~i~~LA~~Y~ALv~~DecHA~GflG~~GRG~~E~~gv~g~vdI~tgTLGKAlGGA~G-GfTta~~evv~lLRQRsR 267 (395)
T TIGR01822 189 APLDEICDLADKYDALVMVDECHATGFLGATGRGTAELLGVMGRVDIITGTLGKALGGASG-GFTTARKEVVELLRQRSR 267 (395)
T ss_pred ECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHCCCCC-CCCCCCHHHHHHHHHCCC
T ss_conf 0767899999855987887443342332789986142137675257740543345114567-643774679998531265
Q ss_pred EECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 211453034332024530033100000122120245664-2101233222222222222222222222222221013226
Q gi|254781062|r 248 PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIAL-GVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVN 326 (406)
Q Consensus 248 p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al-~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~ 326 (406)
T Consensus 268 PYLF----------------------SNsl--pP~vvga~~~vl~~l~~--s~~l~~~L~~n~~~FR~~m~Aa-GFd~~p 320 (395)
T TIGR01822 268 PYLF----------------------SNSL--PPAVVGASIKVLDMLEG--SNELRDRLAENTRYFRERMEAA-GFDVKP 320 (395)
T ss_pred CCCH----------------------HCCC--CHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHC-CCCCCC
T ss_conf 1100----------------------0463--06899999999999842--0579999999999878753424-740178
Q ss_pred CCCCCCCEEEEEECCC-CHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8521586799980899-999999999878969997521127889972899579999358889999999999999999971
Q gi|254781062|r 327 ESLEDSPIISFRLGNI-HPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFF 405 (406)
Q Consensus 327 ~~~~~~~iv~~~~~~~-~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~~l 405 (406)
T Consensus 321 ---~~hpI~pvMlyDA~~Aq~~A~~Ll~~GiYv-~GFfY--PVVPK-G-qARIRvQ~SA~H~~e~l~~a~~AF~~~G~~l 392 (395)
T TIGR01822 321 ---AEHPIIPVMLYDAKLAQRFAERLLEEGIYV-IGFFY--PVVPK-G-QARIRVQISAVHTEEQLDRAVEAFTRVGREL 392 (395)
T ss_pred ---CCCCCEEEECCCHHHHHHHHHHHHHCCEEE-EEEEE--CCCCC-C-CCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---988510232114789999999998779289-97452--64378-8-6124441025689889999999999987862
Q ss_pred C
Q ss_conf 9
Q gi|254781062|r 406 Q 406 (406)
Q Consensus 406 ~ 406 (406)
T Consensus 393 g 393 (395)
T TIGR01822 393 G 393 (395)
T ss_pred C
T ss_conf 6