HHsearch alignment for GI: 254781062 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=100.00 E-value=0 Score=549.53 Aligned_cols=339 Identities=27% Similarity=0.463 Sum_probs=311.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97668888989899999999998614986602679999999999999999999828797654334687689876543223
Q gi|254781062|r 26 YFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGW 105 (406)
Q Consensus 26 Yld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~ 105 (406)
T Consensus 1 YLD~aATtp~~~~v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~-~eiiFTsg~Tes~nl~i~g~ 79 (354)
T TIGR03235 1 YLDHNATTPVDPEVAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQT-KEVIFTSGATESNNIAILGL 79 (354)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHHHHH
T ss_conf 98886789899999999999998668797303128999999999999999999809996-77899688379999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44432013443454011000010000122223222222222222210257887510233443322222222333333321
Q gi|254781062|r 106 GARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKE 185 (406)
Q Consensus 106 ~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~~~pi~~ 185 (406)
T Consensus 80 ~~~~~~~g~~ii~s~~EH~svl~~~~~l-~~~G~~v~~~~vd~~G~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi~~ 158 (354)
T TIGR03235 80 ARAHENKGKHIITTAIEHPAILEPARAL-ERNGFTVTYLEVDESGRVSVEELADAIRDDTLLVSIMHVNNETGSLQPIRE 158 (354)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 9850269999998100304479999999-964968999555789828779999872689779999887566676388999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCC--CCEEECCCCEEEEEEECCC
Q ss_conf 00023444431012332000111000011001122234322235444310002566631--0012114530343320245
Q gi|254781062|r 186 ICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLN--EMDPFMGGSEMIADVTQDM 263 (406)
Q Consensus 186 I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~~~--~~~p~~~g~~~~~~~~~~~ 263 (406)
T Consensus 159 i~~~~~~~g~~~~vDa~Q~~g~~~id~~~~~~D~~s~S~HK~~GP~GiG~L~vr~~~~~~~~l~Pl~~GGgq-------- 230 (354)
T TIGR03235 159 IAELCEAREVFFHSDAAQVVGKITVDLERDHIDLISLSGHKAYGPKGIGALYIRKRGKPKAPLAPIMFGGGQ-------- 230 (354)
T ss_pred HHHHHHCCCCEEEEECHHCCCCCCCCHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCC--------
T ss_conf 988652256415625001158755577884997376310003488714999980466766664640368988--------
Q ss_pred CCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCC-CEEEEEECC
Q ss_conf 300331000001221202456642101233222222222222222222222222-221013226852158-679998089
Q gi|254781062|r 264 VTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLK-EVRGMQLVNESLEDS-PIISFRLGN 341 (406)
Q Consensus 264 ~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~-~~~g~~i~~~~~~~~-~iv~~~~~~ 341 (406)
T Consensus 231 ------e~g~r~GT~nv~~i~g~~~A~~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s~~~~g 303 (354)
T TIGR03235 231 ------ERGLRPGTLPVPLIVGMGEAAEIARR-NAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILSFSFEG 303 (354)
T ss_pred ------CCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECC
T ss_conf ------68746899659999999999999998-28999999999999999999745996596588224758889999799
Q ss_pred CCHHHHHHHHHHCCCEEEECCHHH------HHHHHHCCCC-----CEEEEEE
Q ss_conf 999999999987896999752112------7889972899-----5799993
Q gi|254781062|r 342 IHPYDLALFLDGEGIAIRAGTHCA------NPLLKFLGID-----SLCRASL 382 (406)
Q Consensus 342 ~~~~~v~~~L~~~gI~v~~G~~ca------~~~~~~~g~~-----~~iRiS~ 382 (406)
T Consensus 304 i~~~~l~~~L~-~~iavstGSACssg~~~pS~vL~amg~~~~~a~~~iR~SF 354 (354)
T TIGR03235 304 VNPEALIRNLK-ADAAVSTGSACTSSKYTPSHVLQAMGLDTDRARTAIRFSW 354 (354)
T ss_pred CCHHHHHHHHC-CCCEEEHHHHCCCCCCCCCHHHHHCCCCHHHHCCCEEEEC
T ss_conf 69999999863-9989982242069989989889865999799788779629