HHsearch alignment for GI: 254781062 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.90 E-value=2.7e-23 Score=166.40 Aligned_cols=314 Identities=16% Similarity=0.210 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CCC--CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8989899999999998614-98660267999999999999999999982----879--7654334687689876543223
Q gi|254781062|r 33 AQKPQDVIDSIMCTYSHEY-ANIHRGLHYMANAVTDKYEKARDKVRRFI----NAS--SVKEIIFTRSATESINLVSYGW 105 (406)
Q Consensus 33 ~~~~~~V~~a~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~aR~~ia~~l----ga~--~~~~v~ft~~~Te~~n~~~~~~ 105 (406)
T Consensus 12 ~p~P~~i~~al~~a~~~~~~Y~~~~G~-----------~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~~ 80 (350)
T TIGR03537 12 EPTPPIIRNALKNAVPEVSQYPSAAGT-----------KALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 998799999999960215899898474-----------999999999999986899897877998788389999999997
Q ss_pred HHHHHHCCC---CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-C-CCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 444320134---43454011000010000122223222222222222-2-102578875102334433222222223333
Q gi|254781062|r 106 GARHISTGD---EIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQ-G-FFHIDEFKNRLTERTKLIAITHMSNVLGTV 180 (406)
Q Consensus 106 ~~~~~~~gd---~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~-g-~id~~~l~~~i~~~t~lv~i~~~~~~tG~~ 180 (406)
T Consensus 81 ----~~~gd~~~~Vlv~~P~y~~----y~~~~~~~g~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v 152 (350)
T TIGR03537 81 ----IDPEEDRRRVIFGTPGYPV----YERGALFAGGEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAV 152 (350)
T ss_pred ----CCCCCCCCEEEEECCCCCC----HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf ----3888778769994698730----69999976998999753554488779999997466687199989998983647
Q ss_pred CC---CCCEECCCCCCCCCCCCCCCCCC---CCCCCCHHHHCCC--CCCCCCCCCCCCCC--CCHHHCCCCCCCCCEEEC
Q ss_conf 33---32100023444431012332000---1110000110011--22234322235444--310002566631001211
Q gi|254781062|r 181 IP---IKEICRIAHERNIPVLVDGSQGS---VHNFVDVQDIDCD--WYIITGHKLYGPSG--IGGLYSKESRLNEMDPFM 250 (406)
Q Consensus 181 ~p---i~~I~~~~~~~g~~~~vD~aq~~---g~~~id~~~~~~D--~~~~S~hK~~Gp~G--~G~l~~~~~~~~~~~p~~ 250 (406)
T Consensus 153 ~s~~~l~~l~~~a~~~~~~vi~DE~Y~~l~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlR~G~~~~~~~li~~~~~~~ 232 (350)
T TIGR03537 153 APRSYLEETIAICQEHNIILCSDECYTEIYFGEPPHSALEVGMENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLKKLR 232 (350)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 69999999998632369079843122455348998775563468779996675450467755999978999999999986
Q ss_pred CCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 45303433202453003310000012212024566421012332222222222222222222222222210132268521
Q gi|254781062|r 251 GGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLE 330 (406)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~ 330 (406)
T Consensus 233 ~~--------------------~~~~~~~~~q~a-~~~~~~--~~~~~~~~~~~~~~~r~~~~~~l~~-~g~~~~~p~-- 286 (350)
T TIGR03537 233 AN--------------------FGVASPDFVQAA-AKAAWS--DDSHVIERRKIFRRKRDLFLEFFNK-KGLEYLYPD-- 286 (350)
T ss_pred HH--------------------CCCCHHHHHHHH-HHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCC--
T ss_conf 20--------------------677728999999-999956--8099999999999999999999864-898882688--
Q ss_pred CCCE-EEEEEC-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 5867-999808-999999999998789699975211278899728995799993588899999999999999
Q gi|254781062|r 331 DSPI-ISFRLG-NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400 (406)
Q Consensus 331 ~~~i-v~~~~~-~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~ 400 (406)
T Consensus 287 -g~~~~w~~~~~~~~~~~~~~~ll~~gV~v~pG~~Fg~------~~~~~~Rl~~~--~~~e~l~ealrrl~~ 349 (350)
T TIGR03537 287 -ATFYLWVKVPNGISSKDYALRLLENGIVVAPGENFGS------GEEGYVRVALV--PTLEECEEALRIWES 349 (350)
T ss_pred -CEEEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHCC------CCCCEEEEEEE--CCHHHHHHHHHHHHC
T ss_conf -2259989799998999999999979989976731189------99986999972--899999999999861