HHsearch alignment for GI: 254781062 and conserved domain: TIGR03537

>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.90  E-value=2.7e-23  Score=166.40  Aligned_cols=314  Identities=16%  Similarity=0.210  Sum_probs=191.6

Q ss_pred             CCCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CCC--CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8989899999999998614-98660267999999999999999999982----879--7654334687689876543223
Q gi|254781062|r   33 AQKPQDVIDSIMCTYSHEY-ANIHRGLHYMANAVTDKYEKARDKVRRFI----NAS--SVKEIIFTRSATESINLVSYGW  105 (406)
Q Consensus        33 ~~~~~~V~~a~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~aR~~ia~~l----ga~--~~~~v~ft~~~Te~~n~~~~~~  105 (406)
T Consensus        12 ~p~P~~i~~al~~a~~~~~~Y~~~~G~-----------~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~~   80 (350)
T TIGR03537        12 EPTPPIIRNALKNAVPEVSQYPSAAGT-----------KALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF   80 (350)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             998799999999960215899898474-----------999999999999986899897877998788389999999997


Q ss_pred             HHHHHHCCC---CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-C-CCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             444320134---43454011000010000122223222222222222-2-102578875102334433222222223333
Q gi|254781062|r  106 GARHISTGD---EIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQ-G-FFHIDEFKNRLTERTKLIAITHMSNVLGTV  180 (406)
Q Consensus       106 ~~~~~~~gd---~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~-g-~id~~~l~~~i~~~t~lv~i~~~~~~tG~~  180 (406)
T Consensus        81 ----~~~gd~~~~Vlv~~P~y~~----y~~~~~~~g~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v  152 (350)
T TIGR03537        81 ----IDPEEDRRRVIFGTPGYPV----YERGALFAGGEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAV  152 (350)
T ss_pred             ----CCCCCCCCEEEEECCCCCC----HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf             ----3888778769994698730----69999976998999753554488779999997466687199989998983647


Q ss_pred             CC---CCCEECCCCCCCCCCCCCCCCCC---CCCCCCHHHHCCC--CCCCCCCCCCCCCC--CCHHHCCCCCCCCCEEEC
Q ss_conf             33---32100023444431012332000---1110000110011--22234322235444--310002566631001211
Q gi|254781062|r  181 IP---IKEICRIAHERNIPVLVDGSQGS---VHNFVDVQDIDCD--WYIITGHKLYGPSG--IGGLYSKESRLNEMDPFM  250 (406)
Q Consensus       181 ~p---i~~I~~~~~~~g~~~~vD~aq~~---g~~~id~~~~~~D--~~~~S~hK~~Gp~G--~G~l~~~~~~~~~~~p~~  250 (406)
T Consensus       153 ~s~~~l~~l~~~a~~~~~~vi~DE~Y~~l~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlR~G~~~~~~~li~~~~~~~  232 (350)
T TIGR03537       153 APRSYLEETIAICQEHNIILCSDECYTEIYFGEPPHSALEVGMENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLKKLR  232 (350)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             69999999998632369079843122455348998775563468779996675450467755999978999999999986


Q ss_pred             CCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf             45303433202453003310000012212024566421012332222222222222222222222222210132268521
Q gi|254781062|r  251 GGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLE  330 (406)
Q Consensus       251 ~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~  330 (406)
T Consensus       233 ~~--------------------~~~~~~~~~q~a-~~~~~~--~~~~~~~~~~~~~~~r~~~~~~l~~-~g~~~~~p~--  286 (350)
T TIGR03537       233 AN--------------------FGVASPDFVQAA-AKAAWS--DDSHVIERRKIFRRKRDLFLEFFNK-KGLEYLYPD--  286 (350)
T ss_pred             HH--------------------CCCCHHHHHHHH-HHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCC--
T ss_conf             20--------------------677728999999-999956--8099999999999999999999864-898882688--


Q ss_pred             CCCE-EEEEEC-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             5867-999808-999999999998789699975211278899728995799993588899999999999999
Q gi|254781062|r  331 DSPI-ISFRLG-NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK  400 (406)
Q Consensus       331 ~~~i-v~~~~~-~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~  400 (406)
T Consensus       287 -g~~~~w~~~~~~~~~~~~~~~ll~~gV~v~pG~~Fg~------~~~~~~Rl~~~--~~~e~l~ealrrl~~  349 (350)
T TIGR03537       287 -ATFYLWVKVPNGISSKDYALRLLENGIVVAPGENFGS------GEEGYVRVALV--PTLEECEEALRIWES  349 (350)
T ss_pred             -CEEEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHCC------CCCCEEEEEEE--CCHHHHHHHHHHHHC
T ss_conf             -2259989799998999999999979989976731189------99986999972--899999999999861