HHsearch alignment for GI: 254781062 and conserved domain: TIGR03538
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.89 E-value=1.5e-22 Score=161.84 Aligned_cols=330 Identities=15% Similarity=0.164 Sum_probs=190.1
Q ss_pred CCCEEEEECCCCC-CCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCCCC
Q ss_conf 7865997668888-989899999999998614-98660267999999999999999999982--------8797654334
Q gi|254781062|r 21 KKPLIYFDNAASA-QKPQDVIDSIMCTYSHEY-ANIHRGLHYMANAVTDKYEKARDKVRRFI--------NASSVKEIIF 90 (406)
Q Consensus 21 ~~~~iYld~a~~~-~~~~~V~~a~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~aR~~ia~~l--------ga~~~~~v~f 90 (406)
T Consensus 28 g~~iI~L~iG~Pd~~~P~~v~ea~~~al~~~~~Y~~~~G~-----------~~LReAia~~~~~~~~~~~~~dp~~~I~v 96 (394)
T TIGR03538 28 SLPPIALSIGEPKHATPAFVLEALRENLHGLSTYPTTKGL-----------PELRQAIARWLERRFDLPTGVDPERHVLP 96 (394)
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9987878488899997799999999984388899999886-----------99999999999997398877896776998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCC
Q ss_conf 6876898765432234443201344--3454011000010000122223222222222222--21025788751023344
Q gi|254781062|r 91 TRSATESINLVSYGWGARHISTGDE--IVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQ--GFFHIDEFKNRLTERTK 166 (406)
Q Consensus 91 t~~~Te~~n~~~~~~~~~~~~~gd~--Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~--g~id~~~l~~~i~~~t~ 166 (406)
T Consensus 97 t~Ga~~al~~~~~~l----~~pGd~~~V~~p~P~Y~~----y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l~~~~~~~tk 168 (394)
T TIGR03538 97 VNGTREALFAFAQAV----INPGQAPLVVMPNPFYQI----YEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 168 (394)
T ss_pred CCCHHHHHHHHHHHH----CCCCCCEEEEECCCCCCC----CHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 988899999999997----299981089947886645----299999759989975867345888899999874523665
Q ss_pred CCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCCC-----CCCCCH----HHHCCC-----CCCCCCCCCCC
Q ss_conf 3322222222333333---321000234444310123320001-----110000----110011-----22234322235
Q gi|254781062|r 167 LIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGSV-----HNFVDV----QDIDCD-----WYIITGHKLYG 229 (406)
Q Consensus 167 lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~g-----~~~id~----~~~~~D-----~~~~S~hK~~G 229 (406)
T Consensus 169 ~iil~sP~NPTG~v~s~~~l~~l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 248 (394)
T TIGR03538 169 LLFVCSPGNPTGAVLSLETLKKLIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSN 248 (394)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 99988999998977787999999999732676999806833278578889737877776625444476799955654445
Q ss_pred CCC--CCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 444--310002566631001211453034332024530033100000122120245664210123322222222222222
Q gi|254781062|r 230 PSG--IGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERE 307 (406)
Q Consensus 230 p~G--~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~ 307 (406)
T Consensus 249 ~~G~RiG~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~q~a~-~aa~~--~~~~~~~~r~~~~~ 305 (394)
T TIGR03538 249 LPGLRSGFVAGDAEILKAFLRYRT--------------------YHGCAMPPPTQLAS-IAAWN--DEQHVRENRALYRE 305 (394)
T ss_pred CCCCEEEEEECCHHHHHHHHHHCC--------------------CCCCCCCHHHHHHH-HHHHC--CHHHHHHHHHHHHH
T ss_conf 467517999579999999998522--------------------37426899999999-99848--98999999999999
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCEEEE-EECCCCHHHHHH-HHHHCCCEEEECCHHHHHHH-HHCCCCCEEEEEECC
Q ss_conf 222222222222101322685215867999-808999999999-99878969997521127889-972899579999358
Q gi|254781062|r 308 LARYVRSRLKEVRGMQLVNESLEDSPIISF-RLGNIHPYDLAL-FLDGEGIAIRAGTHCANPLL-KFLGIDSLCRASLAM 384 (406)
Q Consensus 308 l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~-~~~~~~~~~v~~-~L~~~gI~v~~G~~ca~~~~-~~~g~~~~iRiS~~~ 384 (406)
T Consensus 306 r~~~~~~~L~~~--~~~~---~P~Gg~y~w~~~~~-~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G-~g~iR~s~~~ 378 (394)
T TIGR03538 306 KFAAVLEILGPV--LDLE---LPDAGFYLWPKVPG-DDEAFARALYEEENVTVLPGRYLSREAEGVNPG-AGRVRIALVA 378 (394)
T ss_pred HHHHHHHHHHCC--CCCC---CCCEEEEEEEECCC-CHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCC-CCEEEEEECC
T ss_conf 999999986427--9625---79854899996899-999999999986899998773416554578889-9989999759
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 88999999999999999
Q gi|254781062|r 385 YNTYEEADKFIETLKKS 401 (406)
Q Consensus 385 ~nt~edid~~i~~l~~~ 401 (406)
T Consensus 379 --~~e~l~ea~~Rl~~f 393 (394)
T TIGR03538 379 --PLEECVEAAERIRRF 393 (394)
T ss_pred --CHHHHHHHHHHHHHH
T ss_conf --899999999999986