>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.86 E-value=4.8e-21 Score=152.24 Aligned_cols=330 Identities=14% Similarity=0.092 Sum_probs=190.0 Q ss_pred CCHHHHHHHCCCCCCCCCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-- Q ss_conf 897899873841026565786599766888-89898999999999986149866026799999999999999999998-- Q gi|254781062|r 3 FDINSIRKDFPILGRDIRKKPLIYFDNAAS-AQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRF-- 79 (406) Q Consensus 3 ~d~~~~R~~fp~l~~~~~~~~~iYld~a~~-~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~-- 79 (406) T Consensus 4 ~~~~~~~~~~~~~~~--~~~~vI~L~iG~Pd~p~p~~i~~a~~~a~~~~~Y~~~~G~-----------~eLReaia~~~~ 70 (357) T TIGR03539 4 FPWDSLAPYKAKAAS--HPDGIVDLSVGTPVDPVPPLIRAALAAAADAPGYPQTWGT-----------PELREAIVDWLE 70 (357) T ss_pred CHHHHHHHHHHHHHH--CCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC-----------HHHHHHHHHHHH T ss_conf 759999999998886--8999288879999999899999999971247998998477-----------999999999999 Q ss_pred --CCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf --287--9765433468768987654322344432013443454011000010000122223222222222222210257 Q gi|254781062|r 80 --INA--SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHID 155 (406) Q Consensus 80 --lga--~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~ 155 (406) T Consensus 71 ~~~g~~~~~~~~I~vt~G~~~al~~l~~~l---~~~pGD~Vli~~P~y~~-y~---~~~~~~g~~~v~----------~d 133 (357) T TIGR03539 71 RRRGVPGLDPTAVLPVIGTKELVAWLPTLL---GLGPGDTVVIPELAYPT-YE---VGALLAGATPVA----------AD 133 (357) T ss_pred HHCCCCCCCCCEEEECCCHHHHHHHHHHHH---HCCCCCEEEECCCCCCC-HH---HHHHHCCCEEEE----------CC T ss_conf 971999799575998688799999999997---07999989978887700-89---999985998982----------38 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCC---CCCCC---CHHHHCCC----CCCC Q ss_conf 887510233443322222222333333---32100023444431012332000---11100---00110011----2223 Q gi|254781062|r 156 EFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGS---VHNFV---DVQDIDCD----WYII 222 (406) Q Consensus 156 ~l~~~i~~~t~lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~---g~~~i---d~~~~~~D----~~~~ 222 (406) T Consensus 134 ~~~~~~~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~ 213 (357) T TIGR03539 134 DPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVH 213 (357) T ss_pred CHHHCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEE T ss_conf 86667977854999899989623208288999998732055589952332476535898843028645376757679996 Q ss_pred CCCCCCCCCC--CCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 4322235444--31000256663100121145303433202453003310000012212024566421012332222222 Q gi|254781062|r 223 TGHKLYGPSG--IGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300 (406) Q Consensus 223 S~hK~~Gp~G--~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~ 300 (406) T Consensus 214 S~SK~~~~~G~RiG~~~~~~~li~~l~~~~~~--------------------~~~~~~-~~~q~a~~~al~~~~--~~~~ 270 (357) T TIGR03539 214 SLSKRSNLAGYRAGFVAGDPALVAELLTVRKH--------------------AGLMVP-APVQAAMVAALGDDG--HVAE 270 (357) T ss_pred ECCCCCCCCCCEEEEEECCHHHHHHHHHHHHH--------------------CCCCCC-HHHHHHHHHHHCCCH--HHHH T ss_conf 15310045561289996799999999999985--------------------677788-999999999956927--8999 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEE Q ss_conf 22222222222222222221013226852158679998089999999999987896999752112788997289957999 Q gi|254781062|r 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRA 380 (406) Q Consensus 301 i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRi 380 (406) T Consensus 271 ~~~~~~~rr~~l~~~L~~~-g~~~~~p---~g~~y~~~~~~~~~~~~~~~l~e~gV~v~PG~~Fg~------~g~~~vRi 340 (357) T TIGR03539 271 QKARYAARRAQLKPALEKA-GFRIDHS---EAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGP------AGSQHVRV 340 (357) T ss_pred HHHHHHHHHHHHHHHHHHC-CCEECCC---CEEEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCC------CCCCEEEE T ss_conf 9999999999999999857-9776268---806999875899999999999969989947874478------99997999 Q ss_pred EECCCCCHHHHHHHHHHHHH Q ss_conf 93588899999999999999 Q gi|254781062|r 381 SLAMYNTYEEADKFIETLKK 400 (406) Q Consensus 381 S~~~~nt~edid~~i~~l~~ 400 (406) T Consensus 341 s~~~--~~e~l---~eal~R 355 (357) T TIGR03539 341 ALTA--TDERI---AAAVAR 355 (357) T ss_pred EECC--CHHHH---HHHHHH T ss_conf 9729--99999---999985

HHsearch alignment for GI: 254781062 and conserved domain: TIGR03539