HHsearch alignment for GI: 254781062 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.91 E-value=2.3e-24 Score=173.24 Aligned_cols=327 Identities=17% Similarity=0.213 Sum_probs=201.9
Q ss_pred CCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH----CCC--CCCCCC
Q ss_conf 57865997668888--989899999999998614---9866026799999999999999999998----287--976543
Q gi|254781062|r 20 RKKPLIYFDNAASA--QKPQDVIDSIMCTYSHEY---ANIHRGLHYMANAVTDKYEKARDKVRRF----INA--SSVKEI 88 (406)
Q Consensus 20 ~~~~~iYld~a~~~--~~~~~V~~a~~~~~~~~~---~n~~~~~~~~~~~~~~~~~~aR~~ia~~----lga--~~~~~v 88 (406)
T Consensus 27 ~G~dvi~l~-ig~pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~-----------~~lreaia~~~~~~~g~~~~p~~~v 94 (383)
T TIGR03540 27 EGVDVISLG-IGDPDLPTPKHIVEALCKAAENPENHRYPSYEGM-----------LAYRQAVADWYKRRFGVELDPETEV 94 (383)
T ss_pred CCCCEEECC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 699858888-9989999899999999999828887654998784-----------9999999999999868989967669
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCC
Q ss_conf 3468768987654322344432013443454011000010000122223222222222222--21025788751023344
Q gi|254781062|r 89 IFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQ--GFFHIDEFKNRLTERTK 166 (406)
Q Consensus 89 ~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~--g~id~~~l~~~i~~~t~ 166 (406)
T Consensus 95 i~t~Ga~~al~~~~~~l----~~pGD~Vli~~P~Y~~----y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k 166 (383)
T TIGR03540 95 LSLIGSKEGIAHIPLAF----VNPGDIVLVPDPGYPV----YRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAK 166 (383)
T ss_pred EECCCCHHHHHHHHHHH----CCCCCEEEECCCCCCC----HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 98478259999999996----6898989987898601----699999719858996133577985799999874523774
Q ss_pred CCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCC----CCCCCCHHHH----CCCCCCCCCCCCCCCCC--C
Q ss_conf 3322222222333333---32100023444431012332000----1110000110----01122234322235444--3
Q gi|254781062|r 167 LIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGS----VHNFVDVQDI----DCDWYIITGHKLYGPSG--I 233 (406)
Q Consensus 167 lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~----g~~~id~~~~----~~D~~~~S~hK~~Gp~G--~ 233 (406)
T Consensus 167 ~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 246 (383)
T TIGR03540 167 LMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI 246 (383)
T ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 99989998970701210222201001245540576110255530389999771113665542577630235447887348
Q ss_pred CHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10002566631001211453034332024530033100000122120245664210123322222222222222222222
Q gi|254781062|r 234 GGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVR 313 (406)
Q Consensus 234 G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~ 313 (406)
T Consensus 247 G~~i~~~~l~~~~~~~~--------------------~~~~~~~~~~~q~a~-~~al~~~~~~-~~~~~~~~~~~r~~~~ 304 (383)
T TIGR03540 247 GMAVGNADLIAGLGKVK--------------------TNVDSGVFQAIQYAA-IAALNGPQDV-VKEIRKIYQRRRDLLL 304 (383)
T ss_pred EEECCCHHHHHHHHHHH--------------------HHHCCCCCHHHHHHH-HHHHHCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 96228999999999997--------------------551356765999999-9998591999-9999999999999999
Q ss_pred CCCCCCCEEEECCCCCCCCCEEE-EEE-CCCCHHHHHHH-HHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHH
Q ss_conf 22222210132268521586799-980-89999999999-9878969997521127889972899579999358889999
Q gi|254781062|r 314 SRLKEVRGMQLVNESLEDSPIIS-FRL-GNIHPYDLALF-LDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEE 390 (406)
Q Consensus 314 ~~L~~~~g~~i~~~~~~~~~iv~-~~~-~~~~~~~v~~~-L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~ed 390 (406)
T Consensus 305 ~~L~~~-g~~~~~p---~g~~~~w~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~------~g~~~iRl~~~--~~~e~ 372 (383)
T TIGR03540 305 EALKKI-GIDVEKP---KATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE------YGEGYIRISLT--VPDER 372 (383)
T ss_pred HHHHHC-CCEEECC---CCEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHCC------CCCCEEEEEEE--CCHHH
T ss_conf 999876-9877357---805799898999989899999999839999988853288------99886999986--99999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781062|r 391 ADKFIETLKK 400 (406)
Q Consensus 391 id~~i~~l~~ 400 (406)
T Consensus 373 l~eal~RL~k 382 (383)
T TIGR03540 373 LEEAVARIKK 382 (383)
T ss_pred HHHHHHHHHC
T ss_conf 9999999844