HHsearch alignment for GI: 254781062 and conserved domain: TIGR03540

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.91  E-value=2.3e-24  Score=173.24  Aligned_cols=327  Identities=17%  Similarity=0.213  Sum_probs=201.9

Q ss_pred             CCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH----CCC--CCCCCC
Q ss_conf             57865997668888--989899999999998614---9866026799999999999999999998----287--976543
Q gi|254781062|r   20 RKKPLIYFDNAASA--QKPQDVIDSIMCTYSHEY---ANIHRGLHYMANAVTDKYEKARDKVRRF----INA--SSVKEI   88 (406)
Q Consensus        20 ~~~~~iYld~a~~~--~~~~~V~~a~~~~~~~~~---~n~~~~~~~~~~~~~~~~~~aR~~ia~~----lga--~~~~~v   88 (406)
T Consensus        27 ~G~dvi~l~-ig~pdf~~p~~i~~a~~~a~~~~~~~~Y~~~~G~-----------~~lreaia~~~~~~~g~~~~p~~~v   94 (383)
T TIGR03540        27 EGVDVISLG-IGDPDLPTPKHIVEALCKAAENPENHRYPSYEGM-----------LAYRQAVADWYKRRFGVELDPETEV   94 (383)
T ss_pred             CCCCEEECC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             699858888-9989999899999999999828887654998784-----------9999999999999868989967669


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCC
Q ss_conf             3468768987654322344432013443454011000010000122223222222222222--21025788751023344
Q gi|254781062|r   89 IFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQ--GFFHIDEFKNRLTERTK  166 (406)
Q Consensus        89 ~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~--g~id~~~l~~~i~~~t~  166 (406)
T Consensus        95 i~t~Ga~~al~~~~~~l----~~pGD~Vli~~P~Y~~----y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k  166 (383)
T TIGR03540        95 LSLIGSKEGIAHIPLAF----VNPGDIVLVPDPGYPV----YRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAK  166 (383)
T ss_pred             EECCCCHHHHHHHHHHH----CCCCCEEEECCCCCCC----HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCE
T ss_conf             98478259999999996----6898989987898601----699999719858996133577985799999874523774


Q ss_pred             CCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCC----CCCCCCHHHH----CCCCCCCCCCCCCCCCC--C
Q ss_conf             3322222222333333---32100023444431012332000----1110000110----01122234322235444--3
Q gi|254781062|r  167 LIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGS----VHNFVDVQDI----DCDWYIITGHKLYGPSG--I  233 (406)
Q Consensus       167 lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~----g~~~id~~~~----~~D~~~~S~hK~~Gp~G--~  233 (406)
T Consensus       167 ~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  246 (383)
T TIGR03540       167 LMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI  246 (383)
T ss_pred             EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf             99989998970701210222201001245540576110255530389999771113665542577630235447887348


Q ss_pred             CHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10002566631001211453034332024530033100000122120245664210123322222222222222222222
Q gi|254781062|r  234 GGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVR  313 (406)
Q Consensus       234 G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~  313 (406)
T Consensus       247 G~~i~~~~l~~~~~~~~--------------------~~~~~~~~~~~q~a~-~~al~~~~~~-~~~~~~~~~~~r~~~~  304 (383)
T TIGR03540       247 GMAVGNADLIAGLGKVK--------------------TNVDSGVFQAIQYAA-IAALNGPQDV-VKEIRKIYQRRRDLLL  304 (383)
T ss_pred             EEECCCHHHHHHHHHHH--------------------HHHCCCCCHHHHHHH-HHHHHCHHHH-HHHHHHHHHHHHHHHH
T ss_conf             96228999999999997--------------------551356765999999-9998591999-9999999999999999


Q ss_pred             CCCCCCCEEEECCCCCCCCCEEE-EEE-CCCCHHHHHHH-HHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHH
Q ss_conf             22222210132268521586799-980-89999999999-9878969997521127889972899579999358889999
Q gi|254781062|r  314 SRLKEVRGMQLVNESLEDSPIIS-FRL-GNIHPYDLALF-LDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEE  390 (406)
Q Consensus       314 ~~L~~~~g~~i~~~~~~~~~iv~-~~~-~~~~~~~v~~~-L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~ed  390 (406)
T Consensus       305 ~~L~~~-g~~~~~p---~g~~~~w~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~------~g~~~iRl~~~--~~~e~  372 (383)
T TIGR03540       305 EALKKI-GIDVEKP---KATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE------YGEGYIRISLT--VPDER  372 (383)
T ss_pred             HHHHHC-CCEEECC---CCEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHCC------CCCCEEEEEEE--CCHHH
T ss_conf             999876-9877357---805799898999989899999999839999988853288------99886999986--99999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254781062|r  391 ADKFIETLKK  400 (406)
Q Consensus       391 id~~i~~l~~  400 (406)
T Consensus       373 l~eal~RL~k  382 (383)
T TIGR03540       373 LEEAVARIKK  382 (383)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999844