HHsearch alignment for GI: 254781062 and conserved domain: TIGR03542
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.81 E-value=4.3e-20 Score=146.25 Aligned_cols=344 Identities=17% Similarity=0.139 Sum_probs=183.3
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-C-
Q ss_conf 8998738410265657865997668888--98989999999999861498-66026799999999999999999998-2-
Q gi|254781062|r 6 NSIRKDFPILGRDIRKKPLIYFDNAASA--QKPQDVIDSIMCTYSHEYAN-IHRGLHYMANAVTDKYEKARDKVRRF-I- 80 (406)
Q Consensus 6 ~~~R~~fp~l~~~~~~~~~iYld~a~~~--~~~~~V~~a~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~aR~~ia~~-l- 80 (406)
T Consensus 24 ~~~~~~~~-------~~dvI~L-~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~g-Y~~----~~G~~~LReaia~~~~~ 90 (402)
T TIGR03542 24 NEFRKKNP-------SASVIRL-GIGDTTQPLPASVIEAFHEAVDELASEETYRG-YGP----EQGLPALREAIAENDYR 90 (402)
T ss_pred HHHHHHCC-------CCCEEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCC----CCCHHHHHHHHHHHHHC
T ss_conf 99998588-------9985589-89998999899999999999971224678677-797----40649999999999756
Q ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----HH
Q ss_conf -879765433468768987654322344432013443454011000010000122223222222222222210-----25
Q gi|254781062|r 81 -NASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFF-----HI 154 (406)
Q Consensus 81 -ga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~i-----d~ 154 (406)
T Consensus 91 ~~~~~-d~I~vt~Ga~~~l~~l-~a~----l~pGD~Vii~~P~y~~-Y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T TIGR03542 91 GRISP-EEIFISDGAKCDIGRL-QSI----FGSDNTVAVQDPVYPA-Y---VDTAVMTGRAGFADDTGQYRGIVYLPCTK 160 (402)
T ss_pred CCCCH-HHEEECCCCHHHHHHH-HHH----HCCCCEEEEECCCCCC-H---HHHHHHCCCCCCCCCCCCCCCEEECCCCH
T ss_conf 89988-9967777829999999-998----3999989983888815-7---99999859953013566556725676762
Q ss_pred -HHHHHHC--CCCCCCCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCC----CCCCCCHHHH-CC-C--CC
Q ss_conf -7887510--233443322222222333333---32100023444431012332000----1110000110-01-1--22
Q gi|254781062|r 155 -DEFKNRL--TERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGS----VHNFVDVQDI-DC-D--WY 220 (406)
Q Consensus 155 -~~l~~~i--~~~t~lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~----g~~~id~~~~-~~-D--~~ 220 (406)
T Consensus 161 e~~~~~~~~~~~ktk~iiln~P~NPTG~v~s~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s~~~~~~~~~~~I~ 240 (402)
T TIGR03542 161 ENGFIPELPEERKIDIIYLCSPNNPTGTVLTKEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHSIYEIEGAKECAIE 240 (402)
T ss_pred HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCCEECCCCCCEEEE
T ss_conf 43857222345573599989997988756899999999999875070796022288761689876201113665213673
Q ss_pred CCCCCCCCCCCC--CCHHHCCCCCCCCCE-EECCCCEEEEEEECCCCCCCCCHHCCCC---CCCCCHHHHHHHHHCCCCC
Q ss_conf 234322235444--310002566631001-2114530343320245300331000001---2212024566421012332
Q gi|254781062|r 221 IITGHKLYGPSG--IGGLYSKESRLNEMD-PFMGGSEMIADVTQDMVTYADLPYRFEP---GTPPISQAIALGVALDYVE 294 (406)
Q Consensus 221 ~~S~hK~~Gp~G--~G~l~~~~~~~~~~~-p~~~g~~~~~~~~~~~~~~~~~~~r~e~---Gt~~~~~~~al~~al~~~~ 294 (406)
T Consensus 241 i~S~SK~~~m~G~RiG~~i~p~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~q~a~~aal~~~~ 303 (402)
T TIGR03542 241 INSFSKSLGFTGVRLGWTVVPKELTYADGHSVI-----------------QDWERRLCTTFNGASYPVQRAAEAAYAGEG 303 (402)
T ss_pred CCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHH-----------------HHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf 167624027834054021125877542279999-----------------999999876257755999999999973788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEC-CCCHHHHHH-HHHHCCCEEEECCHHHHHHHHHC
Q ss_conf 2222222222222222222222222101322685215867999808-999999999-99878969997521127889972
Q gi|254781062|r 295 KIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLG-NIHPYDLAL-FLDGEGIAIRAGTHCANPLLKFL 372 (406)
Q Consensus 295 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~~~-~~~~~~v~~-~L~~~gI~v~~G~~ca~~~~~~~ 372 (406)
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~--ga~yl~~~~~~~~~~~~~~~~ll~e~~V~vvPG~~--------F 372 (402)
T TIGR03542 304 LQPILEAISYYMENARILREALEA-AGFKVYGGE--NAPYLWVKTPEGISSWDFFDFLLYQYHIVGTPGSG--------F 372 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCC--CCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHH--------H
T ss_conf 599999999999999999998875-695760799--73489787899989899999999859999976447--------6
Q ss_pred CC--CCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 89--9579999358889999999999999999
Q gi|254781062|r 373 GI--DSLCRASLAMYNTYEEADKFIETLKKSI 402 (406)
Q Consensus 373 g~--~~~iRiS~~~~nt~edid~~i~~l~~~i 402 (406)
T Consensus 373 G~~g~g~vRls~a--~~~e~l~ea~~Rl~~~L 402 (402)
T TIGR03542 373 GSSGEGFVRFSAF--GKRENIVAACERIKHAL 402 (402)
T ss_pred CCCCCCEEEEEEE--CCHHHHHHHHHHHHHHC
T ss_conf 8999896999972--99999999999999759