HHsearch alignment for GI: 254781062 and conserved domain: TIGR03542

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.81  E-value=4.3e-20  Score=146.25  Aligned_cols=344  Identities=17%  Similarity=0.139  Sum_probs=183.3

Q ss_pred             HHHHHHCCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-C-
Q ss_conf             8998738410265657865997668888--98989999999999861498-66026799999999999999999998-2-
Q gi|254781062|r    6 NSIRKDFPILGRDIRKKPLIYFDNAASA--QKPQDVIDSIMCTYSHEYAN-IHRGLHYMANAVTDKYEKARDKVRRF-I-   80 (406)
Q Consensus         6 ~~~R~~fp~l~~~~~~~~~iYld~a~~~--~~~~~V~~a~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~aR~~ia~~-l-   80 (406)
T Consensus        24 ~~~~~~~~-------~~dvI~L-~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~g-Y~~----~~G~~~LReaia~~~~~   90 (402)
T TIGR03542        24 NEFRKKNP-------SASVIRL-GIGDTTQPLPASVIEAFHEAVDELASEETYRG-YGP----EQGLPALREAIAENDYR   90 (402)
T ss_pred             HHHHHHCC-------CCCEEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCC----CCCHHHHHHHHHHHHHC
T ss_conf             99998588-------9985589-89998999899999999999971224678677-797----40649999999999756


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----HH
Q ss_conf             -879765433468768987654322344432013443454011000010000122223222222222222210-----25
Q gi|254781062|r   81 -NASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFF-----HI  154 (406)
Q Consensus        81 -ga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~i-----d~  154 (406)
T Consensus        91 ~~~~~-d~I~vt~Ga~~~l~~l-~a~----l~pGD~Vii~~P~y~~-Y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  160 (402)
T TIGR03542        91 GRISP-EEIFISDGAKCDIGRL-QSI----FGSDNTVAVQDPVYPA-Y---VDTAVMTGRAGFADDTGQYRGIVYLPCTK  160 (402)
T ss_pred             CCCCH-HHEEECCCCHHHHHHH-HHH----HCCCCEEEEECCCCCC-H---HHHHHHCCCCCCCCCCCCCCCEEECCCCH
T ss_conf             89988-9967777829999999-998----3999989983888815-7---99999859953013566556725676762


Q ss_pred             -HHHHHHC--CCCCCCCCCCCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCCCCC----CCCCCCHHHH-CC-C--CC
Q ss_conf             -7887510--233443322222222333333---32100023444431012332000----1110000110-01-1--22
Q gi|254781062|r  155 -DEFKNRL--TERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQGS----VHNFVDVQDI-DC-D--WY  220 (406)
Q Consensus       155 -~~l~~~i--~~~t~lv~i~~~~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~~----g~~~id~~~~-~~-D--~~  220 (406)
T Consensus       161 e~~~~~~~~~~~ktk~iiln~P~NPTG~v~s~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s~~~~~~~~~~~I~  240 (402)
T TIGR03542       161 ENGFIPELPEERKIDIIYLCSPNNPTGTVLTKEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHSIYEIEGAKECAIE  240 (402)
T ss_pred             HHCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCCEECCCCCCEEEE
T ss_conf             43857222345573599989997988756899999999999875070796022288761689876201113665213673


Q ss_pred             CCCCCCCCCCCC--CCHHHCCCCCCCCCE-EECCCCEEEEEEECCCCCCCCCHHCCCC---CCCCCHHHHHHHHHCCCCC
Q ss_conf             234322235444--310002566631001-2114530343320245300331000001---2212024566421012332
Q gi|254781062|r  221 IITGHKLYGPSG--IGGLYSKESRLNEMD-PFMGGSEMIADVTQDMVTYADLPYRFEP---GTPPISQAIALGVALDYVE  294 (406)
Q Consensus       221 ~~S~hK~~Gp~G--~G~l~~~~~~~~~~~-p~~~g~~~~~~~~~~~~~~~~~~~r~e~---Gt~~~~~~~al~~al~~~~  294 (406)
T Consensus       241 i~S~SK~~~m~G~RiG~~i~p~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~q~a~~aal~~~~  303 (402)
T TIGR03542       241 INSFSKSLGFTGVRLGWTVVPKELTYADGHSVI-----------------QDWERRLCTTFNGASYPVQRAAEAAYAGEG  303 (402)
T ss_pred             CCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHH-----------------HHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf             167624027834054021125877542279999-----------------999999876257755999999999973788


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEC-CCCHHHHHH-HHHHCCCEEEECCHHHHHHHHHC
Q ss_conf             2222222222222222222222222101322685215867999808-999999999-99878969997521127889972
Q gi|254781062|r  295 KIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLG-NIHPYDLAL-FLDGEGIAIRAGTHCANPLLKFL  372 (406)
Q Consensus       295 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~~~-~~~~~~v~~-~L~~~gI~v~~G~~ca~~~~~~~  372 (406)
T Consensus       304 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~--ga~yl~~~~~~~~~~~~~~~~ll~e~~V~vvPG~~--------F  372 (402)
T TIGR03542       304 LQPILEAISYYMENARILREALEA-AGFKVYGGE--NAPYLWVKTPEGISSWDFFDFLLYQYHIVGTPGSG--------F  372 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECCC--CCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHH--------H
T ss_conf             599999999999999999998875-695760799--73489787899989899999999859999976447--------6


Q ss_pred             CC--CCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             89--9579999358889999999999999999
Q gi|254781062|r  373 GI--DSLCRASLAMYNTYEEADKFIETLKKSI  402 (406)
Q Consensus       373 g~--~~~iRiS~~~~nt~edid~~i~~l~~~i  402 (406)
T Consensus       373 G~~g~g~vRls~a--~~~e~l~ea~~Rl~~~L  402 (402)
T TIGR03542       373 GSSGEGFVRFSAF--GKRENIVAACERIKHAL  402 (402)
T ss_pred             CCCCCCEEEEEEE--CCHHHHHHHHHHHHHHC
T ss_conf             8999896999972--99999999999999759