HHsearch alignment for GI: 254781062 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.89 E-value=1.5e-23 Score=168.15 Aligned_cols=344 Identities=19% Similarity=0.200 Sum_probs=224.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99766888898989999999999861498660-267999999999999-9999999828797654334687689876543
Q gi|254781062|r 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHR-GLHYMANAVTDKYEK-ARDKVRRFINASSVKEIIFTRSATESINLVS 102 (406)
Q Consensus 25 iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~-~~~~~~~~~~~~~~~-aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~ 102 (406)
T Consensus 22 l~L-IaSEN~~S~~v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~~an--Vqp~SGs~AN~av~ 98 (402)
T cd00378 22 LEL-IASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYAN--VQPHSGSQANLAVY 98 (402)
T ss_pred CEE-ECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHH
T ss_conf 647-557664799999985673015476889986466766259999999999999983898747--58787399999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCC--CCC-CCCCHHHHHHHHC-CCCCCCCCCCCCCCCC
Q ss_conf 22344432013443454011000010-00012222322222222--222-2210257887510-2334433222222223
Q gi|254781062|r 103 YGWGARHISTGDEIVLSVMEHHSNII-PWYFLRQRRGASLVWVP--IDN-QGFFHIDEFKNRL-TERTKLIAITHMSNVL 177 (406)
Q Consensus 103 ~~~~~~~~~~gd~Vi~s~~eh~s~~~-~~~~~~~~~G~~v~~i~--~~~-~g~id~~~l~~~i-~~~t~lv~i~~~~~~t 177 (406)
T Consensus 99 ~al----l~pGD~il~l~l~~GGHltHg~~~~v~~~g~~~~~~~Y~vd~~~~~IDyd~~~~~a~~~kPklIi~G~S~y-- 172 (402)
T cd00378 99 FAL----LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY-- 172 (402)
T ss_pred HHH----HCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC--
T ss_conf 997----27999899866434777566778772021356788963245565871899999999865996999777156--
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCC-----CCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCC-CCCCCCEEEC
Q ss_conf 3333332100023444431012332000111-----000011001122234322-23544431000256-6631001211
Q gi|254781062|r 178 GTVIPIKEICRIAHERNIPVLVDGSQGSVHN-----FVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKE-SRLNEMDPFM 250 (406)
Q Consensus 178 G~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~-----~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~-~~~~~~~p~~ 250 (406)
T Consensus 173 ~r~~d~~~~reIad~vgA~l~~D~aHi~GLIA~g~~p~Pl~--~ADvvt~tTHKTlrGPrG-GiIl~~~~~~~~kId~av 249 (402)
T cd00378 173 PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAV 249 (402)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEHHHHHHHEECCCCCCCCC--CCEEEECCCCCCCCCCCC-EEEEECCHHHHHHHHHHH
T ss_conf 56558899999998709889855012344303565799768--765774464345789984-089954278998854650
Q ss_pred CCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 45303433202453003310000012212024566421012332222222222222222222222222210132268521
Q gi|254781062|r 251 GGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLE 330 (406)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~ 330 (406)
T Consensus 250 fPg--------------------~qggph~h~iAa~Aval~Ea~~~~f~~Ya~qVv~NAkaLA~~L~~~-G~~vv~ggTd 308 (402)
T cd00378 250 FPG--------------------LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTD 308 (402)
T ss_pred CCC--------------------CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCC
T ss_conf 986--------------------4467456678999999999868668999999999999999999858-9479748998
Q ss_pred CCCEEEEEE--CCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHHHHHHHHH
Q ss_conf 586799980--89999999999987896999752112788997289957999935888----999999999999999997
Q gi|254781062|r 331 DSPIISFRL--GNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYN----TYEEADKFIETLKKSIQF 404 (406)
Q Consensus 331 ~~~iv~~~~--~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~n----t~edid~~i~~l~~~i~~ 404 (406)
T Consensus 309 -~H~vlvd~~~~g~~G~~a~~~Le~~gI~~Nkn~iP~d--~~~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~~ 385 (402)
T cd00378 309 -NHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWD--PSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred -CCEEEEECCCCCCCHHHHHHHHHHCCEEECCCCCCCC--CCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf -8779996664568999999999984908754748899--9999999761647789985899889999999999999817