HHsearch alignment for GI: 254781062 and conserved domain: cd00613
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.89 E-value=3.6e-23 Score=165.68 Aligned_cols=355 Identities=21% Similarity=0.204 Sum_probs=222.8
Q ss_pred EEEEECCCCC-CCCHHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5997668888-989899999999---998614986602679999999999999999999828797654334687689876
Q gi|254781062|r 24 LIYFDNAASA-QKPQDVIDSIMC---TYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN 99 (406)
Q Consensus 24 ~iYld~a~~~-~~~~~V~~a~~~---~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n 99 (406)
T Consensus 22 ~~fl-G~g~y~h~~p~~v~~~~~r~ef~t~y---tpy-q~E~sQG~Lq~~~e~Qs~i~eLtGmdv-~naSl~d~a~A~aE 95 (398)
T cd00613 22 MSFL-GSGTYKHNPPAVIKRNILENEFYTAY---TPY-QPEISQGRLQALFELQTMLCELTGMDV-ANASLQDEATAAAE 95 (398)
T ss_pred CCCC-CCCCCCCCCHHHHHHHHCHHHHHHCC---CCC-CHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHH
T ss_conf 1567-46025623388989873867671469---998-968869999999999999999868883-56326876779999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54322344432013443454011000010000122223222222222222210257887510233443322222222333
Q gi|254781062|r 100 LVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGT 179 (406)
Q Consensus 100 ~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~ 179 (406)
T Consensus 96 a~~ma~-~~~~~~r~~vlv~~~~hp~~~~v~~t~~~~~g~~i~~v~~~~~G~~d~~~l~~~~~~~~a~v~v~~Pn-~~G~ 173 (398)
T cd00613 96 AAGLAA-IRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGV 173 (398)
T ss_pred HHHHHH-HHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCC-CCEE
T ss_conf 999999-98626899899778778036999999861258658994266677746588887507885999952799-9627
Q ss_pred CCC-CCCEECCCCCCCCCCCCCCCCC-CCCCCCCHHHHCCCCCCCCCCCC-----CCCCCCCHHHCCCCCCCCCEEECCC
Q ss_conf 333-3210002344443101233200-01110000110011222343222-----3544431000256663100121145
Q gi|254781062|r 180 VIP-IKEICRIAHERNIPVLVDGSQG-SVHNFVDVQDIDCDWYIITGHKL-----YGPSGIGGLYSKESRLNEMDPFMGG 252 (406)
Q Consensus 180 ~~p-i~~I~~~~~~~g~~~~vD~aq~-~g~~~id~~~~~~D~~~~S~hK~-----~Gp~G~G~l~~~~~~~~~~~p~~~g 252 (406)
T Consensus 174 ~e~~~~~i~~~~h~~gal~~~~~~~~~l~-~l~~Pg~~GaDI~~g~~q~~g~P~~~GGP~~G~~a~~~~l~r~lPgrivg 252 (398)
T cd00613 174 FEDLIKEIADIAHSAGALVYVDGDNLNLT-GLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVG 252 (398)
T ss_pred EECCHHHHHHHHHHCCCEEEEEECCHHHH-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 85199999999987598699974403531-55571004787798525114665666887443266799877358998565
Q ss_pred CEEEEEEEC---CCCCCCCCHHCCCCCCCCCHH---HHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 303433202---453003310000012212024---5664210--12332222222222222222222222222210132
Q gi|254781062|r 253 SEMIADVTQ---DMVTYADLPYRFEPGTPPISQ---AIALGVA--LDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQL 324 (406)
Q Consensus 253 ~~~~~~~~~---~~~~~~~~~~r~e~Gt~~~~~---~~al~~a--l~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i 324 (406)
T Consensus 253 ~t~D~~G~~~~~ltlqtreqhIrRekatsnict~qal~al~a~~Y~~~lG~~GL~~va~~~~~~A~Yl~~~L~~~~~~~~ 332 (398)
T cd00613 253 VTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP 332 (398)
T ss_pred ECCCCCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 04788887421544135433367775288164327899999999999848863889999999999999999986389826
Q ss_pred CCCCCCCCCEEEEEECC---CCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 26852158679998089---999999999987896999752112788997289957999935888999999999999
Q gi|254781062|r 325 VNESLEDSPIISFRLGN---IHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETL 398 (406)
Q Consensus 325 ~~~~~~~~~iv~~~~~~---~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l 398 (406)
T Consensus 333 ~~~~~--f~EFvi~~~~~~~~~~~~l~k~~i~~G~~~~~---------~y~~~~~~lli~~TE~~skediD~l~~aL 398 (398)
T cd00613 333 FNGPF--FHEFVLRLPPLYGIRAEDLAKALIDGGFHAPT---------MYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CCCCE--EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC---------CCCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 89986--66999976875476899999736215828664---------68888997999805899999999999749