HHsearch alignment for GI: 254781062 and conserved domain: cd06452

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=100.00  E-value=1.4e-33  Score=231.28  Aligned_cols=332  Identities=17%  Similarity=0.219  Sum_probs=225.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             888989899999999998614986-6026799999999999999999998287976543346876898765432234443
Q gi|254781062|r   31 ASAQKPQDVIDSIMCTYSHEYANI-HRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARH  109 (406)
Q Consensus        31 ~~~~~~~~V~~a~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~  109 (406)
T Consensus         9 ~~g~l~~~a~~a~~~~gdgysvcd~c~~--~ld~~~~P~i~efe~~aAeflG~d~---A~~V~Ggt~Gnqa~i~t~----   79 (361)
T cd06452           9 RGGRLTPEARKALIEWGDGYSVCDFCRG--RLDEIEKPPIKDFHHDLAEFLGMDE---ARVTPGAREGKFAVMHSL----   79 (361)
T ss_pred             HCCCCCHHHHHHHHHHCCCCCHHHHCCC--CCCCCCCCCHHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHH----
T ss_conf             1696899999999986786471452056--5334769988999999998719966---999468520899999998----


Q ss_pred             HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHCCC-------CCCCCCCCCCCCCCCCC
Q ss_conf             20134434540110000100001222232222222222--2221025788751023-------34433222222223333
Q gi|254781062|r  110 ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPID--NQGFFHIDEFKNRLTE-------RTKLIAITHMSNVLGTV  180 (406)
Q Consensus       110 ~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~--~~g~id~~~l~~~i~~-------~t~lv~i~~~~~~tG~~  180 (406)
T Consensus        80 c~~GD~VIv~~naH~S~~~a~----~laG~~~~~v~~~~~~~~~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~  155 (361)
T cd06452          80 CEKGDWVVVDGLAHYTSYVAA----ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL  155 (361)
T ss_pred             HCCCCEEEECCCCHHHHHHHH----HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             479988985575128899888----8638469995677685665188999999999998618996499996678773663


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEE
Q ss_conf             3332100023444431012332000111000011001122234322-235444310002566631001211453034332
Q gi|254781062|r  181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKESRLNEMDPFMGGSEMIADV  259 (406)
Q Consensus       181 ~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~  259 (406)
T Consensus       156 ~dl~~I~~iah~y~iPvlvD~A~~~g~lpv~a~~~gaD~v~~s~hK~~~a~~p~gvL~~~~~~~~~v~R~~---~~----  228 (361)
T cd06452         156 HDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTS---QM----  228 (361)
T ss_pred             CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHC---CC----
T ss_conf             13799999999859968971542247579875450796899865655534574378850506788887411---01----


Q ss_pred             ECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE-
Q ss_conf             0245300331000001221202456642101233222222222222222222222222221013226852158679998-
Q gi|254781062|r  260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFR-  338 (406)
Q Consensus       260 ~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~-  338 (406)
T Consensus       229 ----~~--~K~~~~Lg~t~~~~~~~~lmAS~~~~~~~-v-~~~~eev~~ar~~~~el~kI~G~~~~ge~p~~~dl~~~dt  300 (361)
T cd06452         229 ----FK--IKEVELLGCTLRGAPLVTLMASFPHVKER-V-KRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFET  300 (361)
T ss_pred             ----CH--HHHHHHHCCCCCCCHHHHHHCCCHHHHHH-H-HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECC
T ss_conf             ----10--45778746786551799998072999999-9-8777899999999999842845312155777677456147


Q ss_pred             ------E--CCCCHHHHHHHHHHCCCEE-EECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ------0--8999999999998789699-975211278899728995799993588899999999999999999
Q gi|254781062|r  339 ------L--GNIHPYDLALFLDGEGIAI-RAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQ  403 (406)
Q Consensus       339 ------~--~~~~~~~v~~~L~~~gI~v-~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~  403 (406)
T Consensus       301 ~~~~~~~~~~~~~G~~L~~~L~~rgI~~~~~------------g~t~~~~~~t-yG~t~e~i~~l~~a~keI~e  361 (361)
T cd06452         301 PSFDEIAKKHKRRGYFLYSELKKRGIHGIKP------------GLTRYFKLST-YGLTWEQVEYVVDAFKEIAE  361 (361)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHCCCEEECC------------CCCCEEEEEE-ECCCHHHHHHHHHHHHHHHC
T ss_conf             8632441047865006999998769768716------------8533799999-51688899999999999759