HHsearch alignment for GI: 254781062 and conserved domain: cd06452
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=100.00 E-value=1.4e-33 Score=231.28 Aligned_cols=332 Identities=17% Similarity=0.219 Sum_probs=225.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 888989899999999998614986-6026799999999999999999998287976543346876898765432234443
Q gi|254781062|r 31 ASAQKPQDVIDSIMCTYSHEYANI-HRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARH 109 (406)
Q Consensus 31 ~~~~~~~~V~~a~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~ 109 (406)
T Consensus 9 ~~g~l~~~a~~a~~~~gdgysvcd~c~~--~ld~~~~P~i~efe~~aAeflG~d~---A~~V~Ggt~Gnqa~i~t~---- 79 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRG--RLDEIEKPPIKDFHHDLAEFLGMDE---ARVTPGAREGKFAVMHSL---- 79 (361)
T ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHCCC--CCCCCCCCCHHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHH----
T ss_conf 1696899999999986786471452056--5334769988999999998719966---999468520899999998----
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHCCC-------CCCCCCCCCCCCCCCCC
Q ss_conf 20134434540110000100001222232222222222--2221025788751023-------34433222222223333
Q gi|254781062|r 110 ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPID--NQGFFHIDEFKNRLTE-------RTKLIAITHMSNVLGTV 180 (406)
Q Consensus 110 ~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~--~~g~id~~~l~~~i~~-------~t~lv~i~~~~~~tG~~ 180 (406)
T Consensus 80 c~~GD~VIv~~naH~S~~~a~----~laG~~~~~v~~~~~~~~~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~ 155 (361)
T cd06452 80 CEKGDWVVVDGLAHYTSYVAA----ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL 155 (361)
T ss_pred HCCCCEEEECCCCHHHHHHHH----HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 479988985575128899888----8638469995677685665188999999999998618996499996678773663
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEE
Q ss_conf 3332100023444431012332000111000011001122234322-235444310002566631001211453034332
Q gi|254781062|r 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKESRLNEMDPFMGGSEMIADV 259 (406)
Q Consensus 181 ~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~ 259 (406)
T Consensus 156 ~dl~~I~~iah~y~iPvlvD~A~~~g~lpv~a~~~gaD~v~~s~hK~~~a~~p~gvL~~~~~~~~~v~R~~---~~---- 228 (361)
T cd06452 156 HDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTS---QM---- 228 (361)
T ss_pred CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHC---CC----
T ss_conf 13799999999859968971542247579875450796899865655534574378850506788887411---01----
Q ss_pred ECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE-
Q ss_conf 0245300331000001221202456642101233222222222222222222222222221013226852158679998-
Q gi|254781062|r 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFR- 338 (406)
Q Consensus 260 ~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~- 338 (406)
T Consensus 229 ----~~--~K~~~~Lg~t~~~~~~~~lmAS~~~~~~~-v-~~~~eev~~ar~~~~el~kI~G~~~~ge~p~~~dl~~~dt 300 (361)
T cd06452 229 ----FK--IKEVELLGCTLRGAPLVTLMASFPHVKER-V-KRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFET 300 (361)
T ss_pred ----CH--HHHHHHHCCCCCCCHHHHHHCCCHHHHHH-H-HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECC
T ss_conf ----10--45778746786551799998072999999-9-8777899999999999842845312155777677456147
Q ss_pred ------E--CCCCHHHHHHHHHHCCCEE-EECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf ------0--8999999999998789699-975211278899728995799993588899999999999999999
Q gi|254781062|r 339 ------L--GNIHPYDLALFLDGEGIAI-RAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQ 403 (406)
Q Consensus 339 ------~--~~~~~~~v~~~L~~~gI~v-~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~ 403 (406)
T Consensus 301 ~~~~~~~~~~~~~G~~L~~~L~~rgI~~~~~------------g~t~~~~~~t-yG~t~e~i~~l~~a~keI~e 361 (361)
T cd06452 301 PSFDEIAKKHKRRGYFLYSELKKRGIHGIKP------------GLTRYFKLST-YGLTWEQVEYVVDAFKEIAE 361 (361)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHCCCEEECC------------CCCCEEEEEE-ECCCHHHHHHHHHHHHHHHC
T ss_conf 8632441047865006999998769768716------------8533799999-51688899999999999759