HHsearch alignment for GI: 254781062 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=99.13 E-value=5.3e-11 Score=88.99 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=158.6
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 99999828797654334687689876543223444320134-434540110000100001222232222222222222--
Q gi|254781062|r 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGD-EIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQG-- 150 (406)
Q Consensus 74 ~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd-~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g-- 150 (406)
T Consensus 63 ~d~lr~~G~~s~~~~~vvP~aT-GMsl-~~~L~~~~~rp~a~yViw~RiDqKSc~Kai----~~AGl~p~vVe~~~~~d~ 136 (389)
T pfam05889 63 KDFLKLLGLREVKNCFVVPLAT-GMSL-LCMLSWRRKRPKAKYVIWPRIDQKSSIKAA----ERAGFEPRLVETVLDGDY 136 (389)
T ss_pred HHHHHHCCCCCCCCEEEECCCC-CHHH-HHHHHHHHHCCCCCEEEEECCCCCCHHHHH----HHCCCEEEEEEEEECCCE
T ss_conf 9999982974316578950410-4799-999999855889978998635552268999----976971488752522882
Q ss_pred -CCHHHHHHHHCCC---CCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHH-------HCCC
Q ss_conf -1025788751023---34433222222223333-3332100023444431012332000111000011-------0011
Q gi|254781062|r 151 -FFHIDEFKNRLTE---RTKLIAITHMSNVLGTV-IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQD-------IDCD 218 (406)
Q Consensus 151 -~id~~~l~~~i~~---~t~lv~i~~~~~~tG~~-~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~-------~~~D 218 (406)
T Consensus 137 l~Td~~~ie~~i~~~g~~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~-~~~i~~a~r~GRVD 215 (389)
T pfam05889 137 LITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEET-IRLIAAAHECGRVD 215 (389)
T ss_pred EECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHH-HHHHHHHHHCCCCE
T ss_conf 43589999999998387766899844665699996679999999997499747843036617999-99999998638821
Q ss_pred CCCCCCCC-CCCCCCCCHHHCCC-CCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 22234322-23544431000256-66310012114530343320245300331000001221202456642101233222
Q gi|254781062|r 219 WYIITGHK-LYGPSGIGGLYSKE-SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKI 296 (406)
Q Consensus 219 ~~~~S~hK-~~Gp~G~G~l~~~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~ 296 (406)
T Consensus 216 a~VQStDKNflVPVGGaIIas~d~~~i~~is~~YPGRAS--------------------~sp~lDlfI----TLLslG~~ 271 (389)
T pfam05889 216 AVVQSLDKNFIVPVGGAIIAAFDESFIQEISEEYPGRAS--------------------ARPSKDKLI----TLLSLGCK 271 (389)
T ss_pred EEEEECCCCEEEECCCEEEEECCHHHHHHHHHCCCCCCC--------------------CCHHHHHHH----HHHHHHHH
T ss_conf 899706866255348748970888999999841899777--------------------740799999----99997488
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCCCCCCE-EEEEECC------CCHHHHHHHHHHCCCE----EEEC-
Q ss_conf 22222222222222222222222---101322685215867-9998089------9999999999878969----9975-
Q gi|254781062|r 297 DRKSIFSYERELARYVRSRLKEV---RGMQLVNESLEDSPI-ISFRLGN------IHPYDLALFLDGEGIA----IRAG- 361 (406)
Q Consensus 297 g~~~i~~~~~~l~~~l~~~L~~~---~g~~i~~~~~~~~~i-v~~~~~~------~~~~~v~~~L~~~gI~----v~~G- 361 (406)
T Consensus 272 gy~~Ll~eRke~~~~l~e~L~~~a~~~ge~lL~t~~--N~IS~aitl~~l~~~~~~~~t~lgs~Lf~r~VsG~RvV~~~~ 349 (389)
T pfam05889 272 AYLALMKEQKEMFPLLRELLKDLAEEVGEQLLDVPH--NPISSAMTLETLDEISKKGRTDLGSELFSRRVTGARVVRSSD 349 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCC--CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 899999999999999999999999982987513899--951688873455666755499999999756787651665688
Q ss_pred -------CHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf -------211278899728995799993588899999999999999999
Q gi|254781062|r 362 -------THCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQ 403 (406)
Q Consensus 362 -------~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~ 403 (406)
T Consensus 350 ~~~~~~~~~y~~~Ylt---------~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 350 PFGTIEGCEYHGRYLN---------IASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred CCCEEECCCCCCHHHH---------HHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 8534616768836789---------998708868999999999998529