RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase
involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter
asiaticus str. psy62]
(406 letters)
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine..
Length = 373
Score = 580 bits (1497), Expect = e-166
Identities = 202/374 (54%), Positives = 266/374 (71%), Gaps = 1/374 (0%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
+Y DNAA++QKPQ VID+I+ Y H AN+HRG+H ++ TD YE AR+KV RFINA S
Sbjct: 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPS 60
Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
EIIFTR+ TE+INLV+YG G R GDEIV SVMEHHSNI+PW L +R GA L V
Sbjct: 61 PDEIIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVV 119
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P+D+ G ++ + LTERTKL+A+TH+SNVLGT+ P+KEI IAHE +PVLVDG+Q
Sbjct: 120 PVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMV 264
+ H VDVQD+ CD+ +GHK+ GP+GIG LY KE L EM P+ GG EMI +V+ +
Sbjct: 180 AGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239
Query: 265 TYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQL 324
TYADLP++FE GTP I+ AI LG A+DY+EKI ++I ++E EL Y RL E+ G+++
Sbjct: 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV 299
Query: 325 VNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAM 384
++ + + ++SF L IHP+D+A LD GIA+RAG HCA PL++ LG+ RAS +
Sbjct: 300 YGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGL 359
Query: 385 YNTYEEADKFIETL 398
YNT EE D +E L
Sbjct: 360 YNTEEEIDALVEAL 373
>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
metabolism].
Length = 405
Score = 465 bits (1197), Expect = e-131
Identities = 194/407 (47%), Positives = 276/407 (67%), Gaps = 5/407 (1%)
Query: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60
FD+ ++R DFP L R++ KPL+Y DNAA++QKPQ V+D++ Y AN+HRG H
Sbjct: 1 TMFDVAAVRADFPALKREV-GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHT 59
Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
+A TD YE AR+ V RF+NA S EI+FTR TE++NLV+ G G R + GDEIV+S
Sbjct: 60 LAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLG-RSLKPGDEIVVSD 118
Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
+EHHSNI+PW L +R GA + +P+D+ G +D + +T +TKL+A++H+SNV GTV
Sbjct: 119 LEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTV 178
Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSK 239
P+KEI +AHE VLVD +Q + H +DVQ++ CD+ +GHK L GP+GIG LY +
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVR 238
Query: 240 ESRLNEMDPFMGGSEMIADVTQD-MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDR 298
+ L E++PF+GG MI V++D VT A+LP RFE GTP I+ AI L ALDY+ +I
Sbjct: 239 KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGM 298
Query: 299 KSIFSYERELARYVRSRLKEVRGMQLVN-ESLEDSPIISFRLGNIHPYDLALFLDGEGIA 357
++I ++EREL Y+ L E+ G+++ + I+SF + IHP+D+A LD +GIA
Sbjct: 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIA 358
Query: 358 IRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQF 404
+RAG HCA PL + LG+D+ RASL +YNT E+ D+ +E LKK++
Sbjct: 359 VRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALAL 405
>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 371
Score = 448 bits (1154), Expect = e-126
Identities = 173/372 (46%), Positives = 242/372 (65%), Gaps = 3/372 (0%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
IY D+AA+ QKPQ V+D++ Y+ N+HRG+H++ T YE+AR+KV FINA S
Sbjct: 1 IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60
Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
+EIIFT TE+INLV+ G R + GDEI+++ MEHH+N++PW L +R GA++ +
Sbjct: 61 DEEIIFTSGTTEAINLVAISLG-RRLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVI 119
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P+D G +D + LT RTKL+AITH+SNV GTV P++EI ++AHE V+VD +Q
Sbjct: 120 PVDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQA 179
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVT-QDM 263
H +DVQ + D+ +GHKLYGP+GIG LY + L ++ P+ GG MI V+
Sbjct: 180 VGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPWKGGGGMIDLVSLLQE 239
Query: 264 VTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQ 323
T+AD P +FE GTP I+ I LG ALDY+ +I ++I +ERELA Y+ RL + G++
Sbjct: 240 TTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPGIR 299
Query: 324 LV-NESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASL 382
LV + IISF +HP+D+A LD GIA+R+G HCA PL++ LG+ RASL
Sbjct: 300 LVPAVAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCAQPLMERLGVHGTLRASL 359
Query: 383 AMYNTYEEADKF 394
YNT EE D+
Sbjct: 360 YFYNTEEEVDRL 371
>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
transport and metabolism].
Length = 428
Score = 214 bits (545), Expect = 5e-56
Identities = 105/398 (26%), Positives = 181/398 (45%), Gaps = 40/398 (10%)
Query: 24 LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83
+Y DN A+ V+D+++ N H Y A D E AR++V + INA
Sbjct: 44 PVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRS-YGWKA-EDAVEAAREQVAKLINAD 101
Query: 84 SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143
+I+FT ATES NLV G + ++++ H ++ Q G + +
Sbjct: 102 P-SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTY 160
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203
+P+++ G I + + + +T+L++I H++N +G + P+KEI +I E + V VD +Q
Sbjct: 161 LPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220
Query: 204 GSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY--SKESRLNEMDPFMGGSEMIADVTQ 261
VDVQ+++ D+ I+ HK+YGP GIG LY K RL P GG +
Sbjct: 221 AVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERG---- 276
Query: 262 DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321
GT A+ LG A ++V K +Y+ + + + +L G
Sbjct: 277 -----------LRSGTVATPLAVGLGSAAEFVNK-----EMAYDEAIIKRLSEKLLMGIG 320
Query: 322 MQLVNESLEDSPIISF----RLGNIHPYDLALFLDGEGIAIRAGTHCAN------PLLKF 371
L +L S + L + +L +D + +A+ +G+ C + +L+
Sbjct: 321 QSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRA 380
Query: 372 LGID-----SLCRASLAMYNTYEEADKFIETLKKSIQF 404
+G+D S R S+ Y T E+ D ++ +KK +
Sbjct: 381 IGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSL 418
>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 195 bits (498), Expect = 1e-50
Identities = 108/399 (27%), Positives = 179/399 (44%), Gaps = 39/399 (9%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
IY DNAA+ +V+++++ + + N LH E+AR+++ + + A
Sbjct: 3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPS-SLHSFGREARKAVEEAREQIAKLLGADP 61
Query: 85 VKEIIFTRSATESINLVSYG--WGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLV 142
+EIIFT ATES NL G R+ G I+ S +EH + + +L +R+G +
Sbjct: 62 -EEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVT 119
Query: 143 WVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
++P+D+ G +++ + L T L++I H +N GT+ PI EI I ER I VD
Sbjct: 120 YLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179
Query: 203 QGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADVT 260
Q +D++++ D + HK GP GIG LY + ++P + GG E
Sbjct: 180 QAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQE------ 231
Query: 261 QDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVR 320
GT + + G A + + + + + R+L + L E+
Sbjct: 232 ----------RGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEII 280
Query: 321 GMQLVNESLED-SP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHC------ANPLLKFL 372
+N E P I++F + L L LD GIA+ G+ C + +L+ +
Sbjct: 281 PDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAM 340
Query: 373 GID-----SLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
GI R SL + T EE D E LK+ I+ +
Sbjct: 341 GISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V)..
Length = 170
Score = 97.1 bits (242), Expect = 9e-21
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 68 KYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNI 127
K E+ +K+ R + + +F S T + + GDE+++ H S
Sbjct: 1 KLEELEEKLARLLQPG-NDKAVFVPSGTGANEAALLA----LLGPGDEVIVDANGHGSRY 55
Query: 128 IPWYFLRQRRGASLVWVPIDN--QGFFHIDEFKNRLTERTKLIAITHMSNVLGTV-IPIK 184
+ + GA V VP+D+ G + + + + + + G V +P+K
Sbjct: 56 ---WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLK 112
Query: 185 EICRIAHERNIPVLVDGSQGSVH---NFVDVQDIDCDWYIITGHKLYGPSGIGGLYSK 239
EI +IA E I +LVD + V + + D + HK G G G + K
Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
>gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 65.4 bits (159), Expect = 2e-11
Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 60/363 (16%)
Query: 36 PQDVIDSIMCTYSHEYA------NIHRGL--HYMANAVTDKYEKARDKVRRFINASSVKE 87
P+ + T A +++ L + A + E+ + + + A
Sbjct: 62 PRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS 121
Query: 88 IIFTRSATESIN--LVSYGWGARHISTGD--------EIVLSVMEHHSNIIPWYFLRQRR 137
FT TE+ L++ R + + IV S H S +L
Sbjct: 122 GTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---- 177
Query: 138 GASLVWVPIDNQGFFHID-----EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHE 192
G L VP + ID E + T ++ ++ G++ I+E+ IA E
Sbjct: 178 GLGLRRVPTV-PTDYRIDVDALEEAIDENTIGGVVVGTAGTTD-TGSIDDIEELADIAEE 235
Query: 193 RNIPVLVDGSQGSVHNFVDVQDIDCDWYI-------ITGHK-LYGPSGIGGLYSK-ESRL 243
I + VD + G D D+ + + GHK P G G + + E L
Sbjct: 236 YGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEAL 295
Query: 244 NEM----DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
+ D ++ G + + L G+ P QA+AL L + + +
Sbjct: 296 RRILIFADYYLPGG--------GIPNFTIL------GSRPGRQALALYANLRRLGREGYR 341
Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH--PYDLALFLDGEGIA 357
+ ELARY+ L+++ +LVNE + PI++FRL + DL+ LD G
Sbjct: 342 KLLDRTLELARYLAEELEKLGDFELVNEP--ELPIVAFRLKDDEDTLADLSERLDRRGWQ 399
Query: 358 IRA 360
+ A
Sbjct: 400 VPA 402
>gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 62.5 bits (152), Expect = 2e-10
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 27/289 (9%)
Query: 58 LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDE 115
+ + + ++ +K+R+ + ++ + S T ++ + S + GD+
Sbjct: 29 VGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL------VEPGDK 82
Query: 116 IVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE--RTKLIAITHM 173
+++ V + + +R GA +V + ++ +E + L + K +A+ H
Sbjct: 83 VLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHN 140
Query: 174 SNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITG-HK-LYG 229
G + P+KEI + A E ++VD S G VD ID ITG K L
Sbjct: 141 ETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDV---AITGSQKALGA 197
Query: 230 PSGIGGLYSKESRLNEMDPFMGGSEM--IADVTQDMVTYADLPYRFEPGTPPISQAIALG 287
P G+ + E L ++ S + + M PY TPP++ AL
Sbjct: 198 PPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY-----TPPVNLIYALR 252
Query: 288 VALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336
ALD + + ++ + R LA +R+ L+ G++L + SP ++
Sbjct: 253 EALDLILEEGLEARIARHRRLAEALRAGLEA-LGLELFADPERRSPTVT 300
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface..
Length = 361
Score = 55.1 bits (133), Expect = 3e-08
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 106 GARH---------ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVP--------IDN 148
GAR GD +V+ + H+++ Y +R G ++ VP I
Sbjct: 67 GAREGKFAVMHSLCEKGDWVVVDGLAHYTS----YVAAERAGLNVREVPNTGHPEYHITP 122
Query: 149 QGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH 207
+G+ I+E K+ + L +TH+ G + K+I ++ HE +P+L++G+
Sbjct: 123 EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR 182
Query: 208 NFVDVQDIDCDWYIITGHKLY---GPSGI 233
V +++ D+ + +GHK P G+
Sbjct: 183 MPVSGKELGADFIVGSGHKSMAASAPIGV 211
>gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 52.6 bits (126), Expect = 2e-07
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 21/177 (11%)
Query: 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFL 133
+ + F+ V+ T A E+ V + GD +V+ + H++ Y
Sbjct: 68 EDLAEFLGMDEVR---VTAGAREAKFAVMHALCKE----GDWVVVDSLAHYTT----YVA 116
Query: 134 RQRRGASLVWVP--------IDNQGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIK 184
+R G ++ VP I +G+ I+E K+ + L +TH+ G + K
Sbjct: 117 AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAK 176
Query: 185 EICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSG-IGGLYSKE 240
++ +I E +P+L++ + V ++I D+ + +GHK S IG L E
Sbjct: 177 KVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSE 233
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway..
Length = 356
Score = 52.3 bits (126), Expect = 2e-07
Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 45/298 (15%)
Query: 58 LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT---ES--INLVSYGWGARHIST 112
L + + ++ + +R + + + S T E+ NL+
Sbjct: 23 LGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE---------P 73
Query: 113 GDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAIT 171
GD++++ V + W + +R GA + V +E L + K + +T
Sbjct: 74 GDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131
Query: 172 HMSNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHK--L 227
H G + P++ I +A + + ++VD S G +D +D TG + L
Sbjct: 132 HNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDV---AYTGSQKAL 188
Query: 228 YGPSGIG-GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLP--------YRFEPGTP 278
P G+G +S+ + E I T+ Y DL P TP
Sbjct: 189 GAPPGLGPIAFSERAL-----------ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP 237
Query: 279 PISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336
P++ AL ALD + + ++ ++ R LA+ +R L+ G++L+ + SP ++
Sbjct: 238 PVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-LGLKLLAKPELRSPTVT 294
>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 51.8 bits (125), Expect = 4e-07
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 86 KEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF-----LRQRRGAS 140
+ +F S T + N ++ H GDE++ ++I YF + GA
Sbjct: 48 EAALFVPSGTMA-NQLAL---MAHCRRGDEVICG---EPAHI---YFDETGGHAELGGAQ 97
Query: 141 LVWVPIDNQGFFHIDEFKNRLTE-------RTKLIAITHMSNVL-GTVIP---IKEICRI 189
V +P G +++ + + T LI++ + N G V+ ++EI I
Sbjct: 98 PVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAI 157
Query: 190 AHERNIPVLVDG 201
A E IP+ +DG
Sbjct: 158 AREHGIPLHLDG 169
>gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 51.5 bits (123), Expect = 4e-07
Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 20/295 (6%)
Query: 12 FPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEK 71
+ R +IY D + +P+ V + + E+ + A D ++
Sbjct: 20 AKLRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWG--EGLIRSWNKAKADWFDL 77
Query: 72 AR---DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNII 128
DK+ I A + + ++ + T SINL A G +++S E +
Sbjct: 78 PERLGDKLAPLIGARAGEVVV---TDTTSINLFKVLAAALRPQEGRRVIVS--EGDNFPT 132
Query: 129 PWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICR 188
Y A L+ + D +G + +T+ ++ ++H++ G ++ ++ I
Sbjct: 133 DLYIAEGL--ADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITA 190
Query: 189 IAHERNIPVLVD--GSQGSVHNFVDVQDIDCDWYIITGHKLY--GPSGIGGLYSKESRLN 244
+AH+ V D S G+V VD+ D+ I +K GP GL+
Sbjct: 191 LAHQHGALVGWDLAHSAGAVP--VDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRE 248
Query: 245 EMDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKID 297
P + G A YA P RF GT P+ AL ALD +D
Sbjct: 249 RSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD 303
>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 351
Score = 51.2 bits (123), Expect = 5e-07
Identities = 59/335 (17%), Positives = 117/335 (34%), Gaps = 76/335 (22%)
Query: 66 TDKYEKARDKVRRFINASSVKE------IIFTRSATESINLVSYGWGARHISTGDEIVLS 119
TD + R+ + +F+ S V + ++F A +I + + + GD I++
Sbjct: 38 TDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLL----ANPGDAILVP 93
Query: 120 VMEH--HSNIIPWYFLRQRRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSN 175
+ + I G +V P+ + FH+D + L E+ K++ N
Sbjct: 94 APTYASYIRIARL------AGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHESPHN 147
Query: 176 VLGTVIPIKEICRIA---HERNIPVLVD--------GSQGSVHNFVDVQDIDCDWYIITG 224
GTV P++E+ ++ E NI +LVD GS +V + + ++ G
Sbjct: 148 PTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLA--EGPNLLVVG 205
Query: 225 --HKLYGPSG--IGGLYSKE---SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGT 277
K +G +G +G + S+L ++ S
Sbjct: 206 SFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSST---------------------HL 244
Query: 278 PPISQAIALGVAL--DYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPII 335
+ A L +E++ R+ I +E Y+R L+ ++ +
Sbjct: 245 QAAAAAALSDPLLVASELEEM-RQRI----KERRDYLRDGLEAAG----LSVLPSQAGFF 295
Query: 336 SFRLGNIHPYDLALF---LDGEGIAIRAGTHCANP 367
+ L L+ G+ + G+ P
Sbjct: 296 LLTGLD-PETAKELAQVLLEEVGVYVTPGSSPGVP 329
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein..
Length = 350
Score = 50.0 bits (120), Expect = 1e-06
Identities = 67/342 (19%), Positives = 121/342 (35%), Gaps = 60/342 (17%)
Query: 77 RRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV---MEHHSNIIPWYFL 133
RR +EI+ T A E+++L+ ++ GDE+++ + +
Sbjct: 51 RRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLVPDPTYPGYEAAA------ 100
Query: 134 RQRRGASLVWVPIDNQGFFHIDEFKNRL--TERTKLIAITHMSNVLGTVIP---IKEICR 188
+ GA +V VP+D +G F +D T +TKL+ + + +N G V+ ++E+
Sbjct: 101 -RLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAE 159
Query: 189 IAHERNIPVLVD------GSQGSVHNFVD-VQDIDCDWYIITGHKLYGPSG--IGGLYSK 239
+A + I ++ D G + + + + + K +G G IG L +
Sbjct: 160 LAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAP 219
Query: 240 ESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
L E L G +SQA A D E ++
Sbjct: 220 PEELLER-------------------LKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE- 259
Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALF-LDGEGIAI 358
+ R + LKE+ LV + L + L G+ +
Sbjct: 260 -LRERYRRRRDALLEALKELGP--LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVV 316
Query: 359 RAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400
R G+ F+ R S A EE ++ +E L +
Sbjct: 317 RPGSAFGEGGEGFV------RLSFA--TPEEELEEALERLAE 350
>gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 48.7 bits (116), Expect = 3e-06
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 19/137 (13%)
Query: 75 KVRRFINA----SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEH--HSNII 128
VRRF A VK + S T +++L A I GDE+++ +N +
Sbjct: 35 FVRRFEQAFAEYLGVKYAVAVSSGTAALHL---ALLALAIGPGDEVIVPSFTFVATANAV 91
Query: 129 PWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEIC 187
GA V+V ID D + +T RTK I H + G + I
Sbjct: 92 LL------VGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH---LAGQPCDMDAIM 142
Query: 188 RIAHERNIPVLVDGSQG 204
+A +PV+ D +Q
Sbjct: 143 ALAKRHGLPVIEDAAQA 159
>gnl|CDD|32104 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 46.4 bits (110), Expect = 1e-05
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGT-VIPIKEICRIAHERNIPVLVD-G 201
V + H+ +++ + E T L+ H SN T ++ +E+ IAHE+ +PV+VD
Sbjct: 136 VEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLA 195
Query: 202 SQGSVHNFVDVQDI---DCDWYIITGHKLY-GP-SGI 233
S V D+++ D +G KL GP +GI
Sbjct: 196 SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGI 232
>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 46.0 bits (109), Expect = 2e-05
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 111 STGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAI 170
GD IV S + + +R G + +V D+ + F+ + E TK +
Sbjct: 99 GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDD-----PENFEAAIDENTKAVFA 153
Query: 171 THMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
+ N V+ I+ I IAH +P++VD + +
Sbjct: 154 ETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT 188
>gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 381
Score = 45.7 bits (109), Expect = 2e-05
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 110 ISTGDEIVLS---------VMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNR 160
+ GD +V + + E + R G + +V + +D +
Sbjct: 88 LKAGDHVVATDDLYGGTYRLFEK---------VLPRFGIEVTFVDPSD-----LDALEAA 133
Query: 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
+ TK + + +N L V+ I+ I +IA + V+VD + S
Sbjct: 134 IKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFAS 178
>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 45.7 bits (108), Expect = 3e-05
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 29/174 (16%)
Query: 37 QDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATE 96
+ I+++ +H + G+ + A+ +KY++ R ++ +EII T A E
Sbjct: 48 EAAIEALEEGGTHYTPS--AGIPELREAIAEKYKR-----RYGLDVDPEEEIIVTAGAKE 100
Query: 97 SINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---NQ 149
++ L ++ GDE+++ P Y + G V VP+D N
Sbjct: 101 ALFLAFLA----LLNPGDEVLIPD--------PGYPSYEAAVKLAGGKPVPVPLDEEENG 148
Query: 150 GFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+++ + +T +TK I + +N G V +K I +A E +I ++ D
Sbjct: 149 FKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD..
Length = 352
Score = 45.2 bits (108), Expect = 3e-05
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 136 RRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHER 193
GA+ V+V ID + +ID + +T RTK I H+ G + I IA
Sbjct: 77 LLGATPVFVDIDPDTY-NIDPELIEAAITPRTKAIIPVHL---YGNPADMDAIMAIAKRH 132
Query: 194 NIPVLVDGSQG 204
+PV+ D +Q
Sbjct: 133 GLPVIEDAAQA 143
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life..
Length = 369
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+ + + TKL+ + +N V+ I+ I +AHE ++VD
Sbjct: 115 PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD 161
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life..
Length = 349
Score = 42.5 bits (101), Expect = 2e-04
Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 55/260 (21%)
Query: 158 KNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD--------GSQGS--VH 207
+ R KLI + ++ G + P+ E+ +A + + VD G G
Sbjct: 126 EARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185
Query: 208 NFVDVQDIDCDWYIITG--HKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVT 265
D+D II G K +G +GG ++ GS+ + D + +
Sbjct: 186 FGGLTDDVD----IIMGTLGKAFG--AVGG-------------YIAGSKELIDY---LRS 223
Query: 266 YADLPYRFEPGTPPISQAIALGVALDYV----EKIDRKSIFSYERELARYVRSRLKEVRG 321
YA + F PP + A A AL+ + E+ +R +E RY+R LKE G
Sbjct: 224 YAR-GFIFSTSLPP-AVAAAALAALEVLQGGPERRERL------QENVRYLRRGLKE-LG 274
Query: 322 MQLVNESLEDSPIISFRLGNI-HPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRA 380
+ I + + L GI ++A + P + R
Sbjct: 275 FPVGGS--PSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGT-----ARLRI 327
Query: 381 SLAMYNTYEEADKFIETLKK 400
SL+ +T E+ D+ +E LK+
Sbjct: 328 SLSAAHTKEDIDRLLEALKE 347
>gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1
[General function prediction only].
Length = 385
Score = 40.7 bits (95), Expect = 7e-04
Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 17/283 (6%)
Query: 130 WYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAITHMSNVLGTVIPIKEICR 188
+R GA + V D ++E +L++ K + +TH + G + + I
Sbjct: 107 AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166
Query: 189 -IAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNE 245
+ H+ +LVD S G +D +D Y + L P+G+ + + L
Sbjct: 167 ELCHKHEALLLVDTVASLGGTEFEMDEWGVDVA-YTGSQKALGAPAGLSIISFSDKALEA 225
Query: 246 MDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKIDRKSIFS 303
+ + + R TPP+ +L AL + + ++ +
Sbjct: 226 IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWR 285
Query: 304 YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTH 363
RE++++++ L+ + G+QL E RL + + +D + + A +H
Sbjct: 286 RHREMSKWLKLSLEAL-GLQLFVVDEE------LRLPTVTTVKVPYGVDWKDVVAYAMSH 338
Query: 364 CANPLLKFLG--IDSLCRASLAMYN-TYEEADKFIETLKKSIQ 403
+ LG + + R L N E D +E LK ++Q
Sbjct: 339 YVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ 381
>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase.
Length = 367
Score = 39.6 bits (93), Expect = 0.001
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 135 QRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSN--VLGTV--IPIKEICRIA 190
++ GA LV V N+ H+ +++ + E T L+ H SN + G + + E+ +
Sbjct: 109 KQSGARLVEVGTTNRT--HLKDYEQAINENTALLMKVHTSNYRIQGFTKEVSLAELVALG 166
Query: 191 HERNIPVLVDGSQGSVHNF 209
E +PV D GS+ +
Sbjct: 167 KEHGLPVYYDLGSGSLVDL 185
>gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 409
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209
+ + + E TK + + SN L V I+++ R+AH+ V+VD + GS +N
Sbjct: 152 LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207
>gnl|CDD|31207 COG1003, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism].
Length = 496
Score = 39.1 bits (91), Expect = 0.002
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIP 196
G +V V D G +D+ + + + + IT+ + LG I+EIC I HE
Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITN-PSTLGVFEEDIREICEIVHEAGGQ 236
Query: 197 VLVDGS 202
V DG+
Sbjct: 237 VYYDGA 242
>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 38.3 bits (89), Expect = 0.004
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
TKL+ + SN L V I I R+A V+VD
Sbjct: 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVD 185
>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 38.3 bits (89), Expect = 0.004
Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 51/238 (21%)
Query: 178 GTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY 237
G + P+ E+ +A + + VD + G + GP+G G
Sbjct: 185 GDIAPLPELVELAEKYGALLYVDEAHA------------------VG--VLGPNGRGLAE 224
Query: 238 SKESRLNEMDPFMG--------------GSEMIADVTQDMVTYADLPYRFEPGTPPISQA 283
E+D +G GS + D + A P+ F PP + A
Sbjct: 225 HFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID---YLRNRAR-PFIFSTALPP-AVA 279
Query: 284 IALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH 343
A AL +E+ RE + + + + + + +SPII LG+
Sbjct: 280 AAALAALRILEE------GPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEE 333
Query: 344 P-YDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400
+ + L EGI + A P + R +L +T E+ D+ E L +
Sbjct: 334 RALEASRALLEEGIYVSAIRPPTVPKGT-----ARLRITLTAAHTEEDIDRLAEALSE 386
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway..
Length = 338
Score = 38.1 bits (89), Expect = 0.004
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 164 RTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGS 202
L+++ + + GTV P +K I +A E +P+ +DG+
Sbjct: 127 PPSLVSLENTTE-GGTVYPLDELKAISALAKENGLPLHLDGA 167
>gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine
transaminase K [Amino acid transport and metabolism].
Length = 420
Score = 37.6 bits (87), Expect = 0.006
Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 38/180 (21%)
Query: 37 QDVIDSIMCT-YSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT 95
++ Y+ Y GL + A+ Y + ++ E++ T A
Sbjct: 54 KNAAKEPSTNQYTRGY-----GLPQLRKALAKAY---SEFYGGLLDPDD--EVLVTAGAN 103
Query: 96 ESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---- 147
E+I+ G ++ GDE+++ P++ G + V+VP+
Sbjct: 104 EAISSALLGL----LNPGDEVIV--------FEPFFDCYIPQVVMAGGTPVFVPLKPKEG 151
Query: 148 ----NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+ +E ++++TE+TK I + N G V ++ I + + + V+ D
Sbjct: 152 NVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211
>gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC, and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyses the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 363
Score = 37.2 bits (87), Expect = 0.007
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 110 ISTGDE-IVLSVMEHHS-NIIPWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTK 166
I GDE IV S + N + + GA V+V ID + + +T RTK
Sbjct: 62 IGPGDEVIVPSFTFVATANAVLYL------GAKPVFVDIDPDTYNIDPAAIEAAITPRTK 115
Query: 167 LIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
I H+ G + I IA E +PV+ D +
Sbjct: 116 AIMPVHL---YGQPADMDAIRAIAAEHGLPVIEDAAHA 150
>gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 36.4 bits (84), Expect = 0.013
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 147 DNQGFFHIDEFKNRLT------ERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPV 197
G ++ + + T L + + + GTV P ++ I + E +P+
Sbjct: 107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPL 166
Query: 198 LVDGS 202
+DG+
Sbjct: 167 HMDGA 171
>gnl|CDD|33757 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 35.7 bits (82), Expect = 0.022
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 144 VPIDNQGFF--HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRI---AHERNIPVL 198
+ + G F H+D + E T I ++ +N G V+ +E+ ++ A + IP++
Sbjct: 157 IELLPAGQFKYHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLI 216
Query: 199 VDGSQG 204
+D + G
Sbjct: 217 IDNAYG 222
>gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme
transport and metabolism].
Length = 570
Score = 35.4 bits (81), Expect = 0.032
Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 164 RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIIT 223
K++A + ++ G V P++E+C +AH+ +D VH
Sbjct: 303 VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLD----EVHAV-------------- 344
Query: 224 GHKLYGPSGIGGLYSKESRLNEMDPF----------MGGSEMIADVTQDMVTYADLPYRF 273
LYGP G G+ ++ ++++D +GG DM+ + F
Sbjct: 345 --GLYGPRG-AGVGERDGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIF 401
Query: 274 EPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSP 333
PP+ A AL A+ ++ + + + + +YV+ L E G+ ++ S
Sbjct: 402 TTSLPPMVLAGAL-EAVRILKSEEGRVLRRQHQRNVKYVKQLLME-LGIPVIP---NPSH 456
Query: 334 IISFRLGNIH 343
II R+G+
Sbjct: 457 IIPVRVGDAA 466
>gnl|CDD|32083 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
modification, protein turnover, chaperones].
Length = 318
Score = 32.1 bits (73), Expect = 0.27
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 146 IDNQGFFHIDEFK----NRLTERTKLIAITHMSNVLGTVIPIKE--ICRIAHERNIPV-- 197
+ N+ + +EF +L K + LG + E I A + +P+
Sbjct: 130 VPNEEYEVFEEFIREILEKLLGIKKEWSTREFIYELGKRLNDDESSILYTAAKNGVPIFC 189
Query: 198 --LVDGSQGS 205
+ D S G
Sbjct: 190 PAITDSSIGD 199
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life..
Length = 398
Score = 30.7 bits (70), Expect = 0.69
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIPVLVDG 201
VP D G ++ K ++E + + + N LG IKEI IAH V VDG
Sbjct: 139 VPSDEGGTVDLEALKEEVSEEVAALMVQY-PNTLGVFEDLIKEIADIAHSAGALVYVDG 196
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine..
Length = 345
Score = 30.6 bits (70), Expect = 0.74
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 31/154 (20%)
Query: 74 DKVRRFINASSVKEI-IFTRSATESI--NLVSYGWGARHISTGD--------EIVLSVME 122
+ + + S +FT +ES L++ AR IV S
Sbjct: 45 NWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQA 104
Query: 123 HHSNIIPWYFLRQRRGAS-----LVWVPIDNQGFFHIDEFKNRLTERTKLIAITHM---- 173
H S + A+ + VP+D G + + + E M
Sbjct: 105 HVSV---------EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVAT 155
Query: 174 --SNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
+ G + P++EI +A + ++ + VD + G
Sbjct: 156 AGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189
>gnl|CDD|35232 KOG0008, KOG0008, KOG0008, Transcription initiation factor TFIID,
subunit TAF1 [Transcription].
Length = 1563
Score = 30.0 bits (67), Expect = 1.3
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 16/89 (17%)
Query: 247 DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYER 306
DP + S ++ + R P T P + DY I +
Sbjct: 1257 DPSVSLSSILETIINQA--------RSSPNTYPFPTPVNAKEVKDYYRVITPPM---DLQ 1305
Query: 307 ELARYVRSRLKEVRGMQLVNESLEDSPII 335
+ VR RL E R LE+ P+I
Sbjct: 1306 TQKKLVRKRLYESR-----EHFLEELPLI 1329
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life..
Length = 294
Score = 29.5 bits (67), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 155 DEFKNRLTERT--KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+ FK L E K IT+ G +++I AH R +PVLVD
Sbjct: 143 ETFKKALIEHPDAKAAVITN-PTYYGICYNLRKIVEEAHHRGLPVLVD 189
>gnl|CDD|39050 KOG3846, KOG3846, KOG3846, L-kynurenine hydrolase [Amino acid
transport and metabolism].
Length = 465
Score = 29.2 bits (65), Expect = 2.0
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 229 GPSGIGGLYSKESRLNEMDPFMGG---SEMIADVTQDMVTYAD---LPYRFEPGTPPISQ 282
G GIGGL+ E E P + G + D V L +R PPI
Sbjct: 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRIS--NPPIID 338
Query: 283 AIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321
+AL +L+ + + + L Y+ LK +G
Sbjct: 339 VVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKG 377
>gnl|CDD|38072 KOG2861, KOG2861, KOG2861, Uncharacterized conserved protein
[Function unknown].
Length = 399
Score = 28.7 bits (64), Expect = 2.8
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 280 ISQAIALGVALDYVEK-IDR--KSIFSYERELARYVRSRLKEVRGMQLVNE 327
IS A+A V L Y E +D+ +S LA + L ++ + +
Sbjct: 248 ISHALAQSVKLSYFESLVDKTIESTTDIPESLALGGKLTLSREELLKKIGK 298
>gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown..
Length = 341
Score = 28.7 bits (64), Expect = 3.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 152 FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209
+ + FK RL E + + N +G + +K+I +A +PV+ SQ ++N+
Sbjct: 232 YTVYGFK-RLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHASQ--IYNY 286
>gnl|CDD|145208 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic initiation
factor 5A (eIF-5A) contains an unusual amino acid,
hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The
first step in the post-translational formation of
hypusine is catalysed by the enzyme deoxyhypusine
synthase (DS) EC:1.1.1.249. The modified version of
eIF-5A, and DS, are required for eukaryotic cell
proliferation.
Length = 297
Score = 27.8 bits (62), Expect = 5.7
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 148 NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPI-KEICRIAHERNIPV----LVDGS 202
F ++ + K+ + + LG I + + AH+ NIP+ L DGS
Sbjct: 124 LMPIF--EKMLEEQEKEGKIWTPSEFIHELGKEINDERSVLYWAHKNNIPIFCPALTDGS 181
Query: 203 QG 204
G
Sbjct: 182 LG 183
>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain. This family consists
of various enzymes that use FAD as a co-factor, most of
the enzymes are similar to oxygen oxidoreductase. One of
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved
structure, the alignment includes the FAD binding site,
called the PP-loop, between residues 99-110. The FAD
molecule is covalently bound in the known structure,
however the residue that links to the FAD is not in the
alignment. VAO catalyses the oxidation of a wide variety
of substrates, ranging form aromatic amines to
4-alkylphenols. Other members of this family include
D-lactate dehydrogenase, this enzyme catalyses the
conversion of D-lactate to pyruvate using FAD as a
co-factor; mitomycin radical oxidase, this enzyme
oxidizes the reduced form of mitomycins and is involved
in mitomycin resistance. This family includes MurB an
UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
EC:1.1.1.158. This enzyme is involved in the
biosynthesis of peptidoglycan.
Length = 138
Score = 27.6 bits (62), Expect = 6.0
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVD 211
+ I R+A+E +PVLV +G + +
Sbjct: 13 VAAIVRLANEHGLPVLV---RGGGSSLLG 38
>gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine
C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase
[Amino acid transport and metabolism].
Length = 417
Score = 27.3 bits (60), Expect = 7.0
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 110 ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIA 169
I T ++ V S +H++II L +R V F + R KL+
Sbjct: 147 ILTPEDAVFSDELNHASIIDGIRLCKRYRHVDV--------FDLEHCLISACKMRLKLVV 198
Query: 170 ITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
+ ++ G + P++EI ++A + + +D +
Sbjct: 199 TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHAT 234
>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 27.5 bits (61), Expect = 7.2
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 275 PGTPPISQAIALGVALDY--VEKIDRKSIF------SYERELARYVRSRLKEVRGMQLVN 326
P T P + AIA+ LDY VE K I S ++ L+ +G +L
Sbjct: 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEG 296
Query: 327 ESLEDSPIISFRLGNIHPYDLALFL---DGEGI 356
E P F P L + DG G+
Sbjct: 297 LRYE-HPFYDFVYDRAFPVILGDHVTLDDGTGL 328
>gnl|CDD|37251 KOG2040, KOG2040, KOG2040, Glycine dehydrogenase (decarboxylating)
[Amino acid transport and metabolism].
Length = 1001
Score = 27.2 bits (60), Expect = 7.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIA---ITHMSNVLGTVIP-IKEICRIAHER 193
G +V V D G + + K + + +A +T+ S G I +IC I HE
Sbjct: 651 GMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEH 709
Query: 194 NIPVLVDGS 202
V +DG+
Sbjct: 710 GGQVYLDGA 718
>gnl|CDD|37379 KOG2168, KOG2168, KOG2168, Cullins [Cell cycle control, cell
division, chromosome partitioning].
Length = 835
Score = 27.2 bits (60), Expect = 8.6
Identities = 13/108 (12%), Positives = 29/108 (26%)
Query: 14 ILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKAR 73
L + ++ S + P+ E +I+ Y+ N V K KA
Sbjct: 148 ALLASSQDFIDASRESEPSQRSPRPNSPGRSSLKGIELNSIYARKAYIYNEVLHKLNKAG 207
Query: 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVM 121
+ + + + + + +T D+
Sbjct: 208 QPNLVDLLFNVASQSLGDEDIADMWTNLQSMTQLTDPATRDDSKNRSG 255
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.414
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,027,033
Number of extensions: 272598
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 53
Length of query: 406
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,189,273
Effective search space: 1298674630
Effective search space used: 1298674630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)