RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase
involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter
asiaticus str. psy62]
(406 letters)
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved.
Length = 403
Score = 573 bits (1479), Expect = e-164
Identities = 202/401 (50%), Positives = 285/401 (71%), Gaps = 2/401 (0%)
Query: 8 IRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTD 67
IR DFPIL R I KPL+Y D+AA++QKPQ VID++ Y + AN+HRG+H ++ T+
Sbjct: 3 IRADFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATE 62
Query: 68 KYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNI 127
YE R+KV +FINA+S +EI+FTR TESINLV+Y WG ++ GDEIV+S MEHH+NI
Sbjct: 63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANI 122
Query: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEIC 187
+PW L +R GA+L ++P+D+ G +D+ + LTE+TKL+AITH+SNVLGTV P++EI
Sbjct: 123 VPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIA 182
Query: 188 RIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMD 247
++AH+ VLVDG+Q H VDVQ +DCD+Y+ +GHK+YGP+GIG LY KE L +M
Sbjct: 183 KLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMP 242
Query: 248 PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERE 307
PF+GG EMIA+V+ + TY + P++FE GTP I+ I LG A+DY+E I ++I ++E E
Sbjct: 243 PFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHE 302
Query: 308 LARYVRSRLKEVRGMQLV--NESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCA 365
L Y RL E+ G+++ ++ + IISF + +HP+D+ LD EGIA+R+G HCA
Sbjct: 303 LTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCA 362
Query: 366 NPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
PL++ G+ + CRAS +YNT E+ D +E LKK +FF
Sbjct: 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFFG 403
>gnl|CDD|178446 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 461 bits (1187), Expect = e-130
Identities = 186/403 (46%), Positives = 261/403 (64%), Gaps = 5/403 (1%)
Query: 8 IRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTD 67
R DFPIL + + L+Y DNAA++QKP V+D++ Y +N+HRG+H ++ TD
Sbjct: 17 TRPDFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATD 76
Query: 68 KYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNI 127
YE AR KV FINAS+ +EI+FTR+ATE+INLV+Y WG ++ GDE++LSV EHHSNI
Sbjct: 77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNI 136
Query: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEIC 187
+PW + Q+ GA L +V + +++ K L+E+TKL+A H+SNVLG+++P+++I
Sbjct: 137 VPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIV 196
Query: 188 RIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMD 247
AH VLVD Q H VDVQ + D+ + + HK+ GP+GIG L+ K L M
Sbjct: 197 HWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMP 256
Query: 248 PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERE 307
PF+GG EMI+DV D TYA P RFE GTP I +AI LG A+DY+ +I I YE E
Sbjct: 257 PFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVE 316
Query: 308 LARYVRSRLKEVRGMQL----VNESLEDSPIISFRLGNIHPYDLALFLDGE-GIAIRAGT 362
L Y+ +L V G+++ +E + + + +F + IHP DL+ FLD + G+AIR+G
Sbjct: 317 LGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGH 376
Query: 363 HCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFF 405
HCA PL ++LG+++ RASL YNT EE D FI LK +I FF
Sbjct: 377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 452 bits (1164), Expect = e-128
Identities = 187/401 (46%), Positives = 256/401 (63%), Gaps = 2/401 (0%)
Query: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60
MTF + +R DFP+L R++ PL Y D+AASAQKP VID+ Y H YA +HRG+H
Sbjct: 1 MTFSVEKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHT 60
Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
++ T+K E R + FINA S +E++F R TE INLV+ WG ++ GD I++S
Sbjct: 61 LSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISE 120
Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
MEHH+NI+PW L R GA L +P++ G ++ ERT+L+AITH+SNVLGT
Sbjct: 121 MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTE 180
Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240
P+ E+ +AH+ VLVDG+Q +H+ VDVQ +DCD+Y+ +GHKLYGP+GIG LY KE
Sbjct: 181 NPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 241 SRLNEMDPFMGGSEMIADVT-QDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
+ L EM P+ GG MIA V+ + T+A P+RFE GTP I LG ALDYV +
Sbjct: 241 ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLN 300
Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIR 359
+I YE+ L Y S+L+ V + L +I+F LG H YD+ FLD GIA+R
Sbjct: 301 NIAEYEQNLMHYALSQLESVPDLTLYGPQ-NRLGVIAFNLGKHHAYDVGSFLDNYGIAVR 359
Query: 360 AGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400
G HCA PL+ + + ++CRASLAMYNT+EE D+ + L++
Sbjct: 360 TGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQR 400
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 368 bits (948), Expect = e-103
Identities = 152/406 (37%), Positives = 227/406 (55%), Gaps = 7/406 (1%)
Query: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60
F+ R FP L +Y D+AA+A KPQ VI++ YS N+HR
Sbjct: 2 NVFNPAQFRAQFPALQ-----DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFA 56
Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
A +T +YE AR++V + +NA K I++TR TESINLV+ + + GDEI++S
Sbjct: 57 AAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE 116
Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
EHH+N++PW + Q+ GA +V +P+ +D +T RT+++A+ MSNV G
Sbjct: 117 AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGC 176
Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240
+ +AH+ + V+VDG+QG+VH DVQ +D D+Y +GHKLYGP+GIG LY K
Sbjct: 177 PDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKS 236
Query: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300
L M P+ GG +M+ +V+ D T P+RFE GTP ++ I L AL+++ ID
Sbjct: 237 ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQ 296
Query: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360
S+ R LA L ++ G + + +DS +++F +H DL L GIA+RA
Sbjct: 297 AESWSRSLATLAEDALAKLPGFR--SFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRA 354
Query: 361 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
G HCA PLL LG+ RAS A YNT + D + + ++++
Sbjct: 355 GQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELLV 400
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems.
Length = 398
Score = 350 bits (899), Expect = 4e-97
Identities = 154/404 (38%), Positives = 228/404 (56%), Gaps = 7/404 (1%)
Query: 3 FDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMA 62
F+ R+ FP L + +Y D+AA+A KPQ VID+ Y +HR H A
Sbjct: 1 FNPAQFRQQFPAL-----QDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQA 55
Query: 63 NAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVME 122
++T +YE AR +V RF+NA + I++TR TESINLV+ + + GDEI++S E
Sbjct: 56 QSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAE 115
Query: 123 HHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP 182
HH+N+IPW + Q+ GA +V +PI I + LT RT+++A+ MSNV G
Sbjct: 116 HHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPD 175
Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242
+ +AH+ V+VDG+QG VH DVQ +D D+Y +GHKLYGP+GIG LY K
Sbjct: 176 LARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTEL 235
Query: 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIF 302
L M P+ GG +M++ V+ D +P+RFE GTP I+ I L AL+++ ID +
Sbjct: 236 LEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAE 295
Query: 303 SYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGT 362
++ LA RL ++ G + + S +++F +H DLA L GIA+RAG
Sbjct: 296 AWSVSLADLAEERLAQLPGFR--SFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQ 353
Query: 363 HCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
HCA PL+ LG+ RAS A YNT ++ D ++ + +++
Sbjct: 354 HCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELLN 397
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown.
Length = 376
Score = 232 bits (594), Expect = 1e-61
Identities = 120/388 (30%), Positives = 194/388 (50%), Gaps = 27/388 (6%)
Query: 25 IYFDNAASA-QKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83
IYFDNAA+ KP +V +++ Y + + RG + +A + + E+ R + + NA
Sbjct: 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60
Query: 84 SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143
S ++FT +AT ++N+ G + GD ++ + MEH+S P L+++ G +
Sbjct: 61 SSAHVVFTNNATTALNIALKG----LLKEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203
V DN+G + K + TKLI ++H SNV GT++PI+EI +A E I ++D +Q
Sbjct: 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176
Query: 204 GSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSKESRLNEMDPFMGG-----SEMIA 257
+ +D+ ++ D TGHK L GP G GGLY +E ++ P G S +I
Sbjct: 177 TAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALI- 233
Query: 258 DVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLK 317
D ++ P RFE GT L + ++EKI +I E L + + L+
Sbjct: 234 DQPSEL------PDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLR 287
Query: 318 EVRGMQLV--NESLEDSPIISFRLGNIHPYDLALFLDGE-GIAIRAGTHCANPLL-KFLG 373
E+ +++ + ++SF + I ++A LD + IA R G HCA PL K +G
Sbjct: 288 EINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCA-PLAHKTIG 346
Query: 374 I--DSLCRASLAMYNTYEEADKFIETLK 399
R SL +NT EE +K +E L
Sbjct: 347 TFATGTIRLSLGYFNTEEEIEKLLEALS 374
>gnl|CDD|162635 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase.
Length = 397
Score = 209 bits (535), Expect = 7e-55
Identities = 123/417 (29%), Positives = 197/417 (47%), Gaps = 41/417 (9%)
Query: 3 FDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMA 62
FD+ ++R FP L R ++FDN A Q PQ V D++ + AN RG Y +
Sbjct: 1 FDVEAVRGQFPALADGDR----VFFDNPAGTQIPQSVADAVSAALTRSNAN--RGGAYES 54
Query: 63 NAVTDKY-EKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVM 121
+ D+ + AR+ V +NA E++F +AT L+S R GDE++++ +
Sbjct: 55 SRRADQVVDDAREAVADLLNADP-PEVVFGANATSLTFLLSRAIS-RRWGPGDEVIVTRL 112
Query: 122 EHHSNIIPWYFLRQRRGASLVWVPID-NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
+H +NI PW +R GA + W +D G H D+ + L+ RT+L+A+T SN LG++
Sbjct: 113 DHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSI 172
Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240
+ + I + H V+VD + H +DVQ D+ + +K +GP +G L+ +
Sbjct: 173 VDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRP 231
Query: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDR-- 298
L + P+ + +Y P RFE GTP + A+DY+ +
Sbjct: 232 ELLMNLPPY-----------KLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESA 280
Query: 299 ------------KSIFSYERELARYVRSRLKEVRGMQL--VNESLEDSPIISFRLGNIHP 344
++I +YE LA Y+ L ++ G+ L V P +SF + + P
Sbjct: 281 NGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPP 340
Query: 345 YDLALFLDGEGIAIRAGTHCANPLLKFLGI---DSLCRASLAMYNTYEEADKFIETL 398
+ L +GI AG A LL+ LG+ + R LA YNT EE D+ +E L
Sbjct: 341 QRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 149 bits (378), Expect = 1e-36
Identities = 104/401 (25%), Positives = 178/401 (44%), Gaps = 52/401 (12%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
IY DN A+ + +V+++++ ++ + N +H V E+AR++V + + A
Sbjct: 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGN-PSSMHSFGGEVGKAVEEAREQVAKLLGAEP 59
Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
EIIFT TES N A I+ + +EH + + L +++G + ++
Sbjct: 60 -DEIIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHL-EKQGYKVTYL 116
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P+D +G ++E + +T+ T L+++ +N GT+ PI+EI IA ER D Q
Sbjct: 117 PVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQA 176
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADVTQD 262
+D+++++ D ++GHKL+GP G+G LY ++ P + G E
Sbjct: 177 VGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQE-------- 226
Query: 263 MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLK----- 317
GT + + LG A E E R +R RL+
Sbjct: 227 --------RGRRAGTENVPGIVGLGKA---AELATEH--LEEENTRVRALRDRLEAGLLA 273
Query: 318 ---EVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCAN----P--L 368
+ R + L ++ ISF I + L LD EGI +G+ C + P +
Sbjct: 274 RIPDARLNGDPTKRLPNTVNISFE--YIEGEAILLLLDMEGICASSGSACTSGSLEPSHV 331
Query: 369 LKFLGI------DSLCRASLAMYNTYEEADKFIETLKKSIQ 403
L+ +G+ S+ R SL+ YNT E+ D +E L I
Sbjct: 332 LRAMGVPHTAAHGSI-RFSLSRYNTEEDIDYVLEVLPPIIA 371
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PubMed:11123951), so we use this
designation.
Length = 382
Score = 138 bits (348), Expect = 3e-33
Identities = 114/401 (28%), Positives = 179/401 (44%), Gaps = 49/401 (12%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
+Y DN A+ V + + + Y N + LH A +A DK+ + INA
Sbjct: 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPN-SLHQFGTATHPAIAEALDKLYKGINARD 59
Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGD--EIVLSVMEHHSNIIPWYFLRQRRGASLV 142
+ +II T ATES N V G I G I+ + +EH + FL + G +
Sbjct: 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFL-ESLGVEVT 118
Query: 143 WVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
++PI+ QG ++ + +TE+T L+++ +N G + PIKEI I ER + D
Sbjct: 119 YLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAV 178
Query: 203 QGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDP-FMGGSEMIADVTQ 261
Q VDVQ D+ + HK +GP G+GGLY ++ E+ P F GG M
Sbjct: 179 QAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHMGGR--- 233
Query: 262 DMVTYADLPYRFEPGTPPISQAIALGVALDY-VEKIDRKSIFSYERELARYVRSRLK--- 317
GT + +A+G A+ E +D +E+ R +R RL+
Sbjct: 234 ------------RSGTLNVPYIVAMGEAMRLANEYLD------FEKSHVRRLRDRLEDAL 275
Query: 318 -EVRGMQLVNESLEDSP---IISFRLGNIHPYDLALFLDGEGIAIRAGTHCA------NP 367
E+ + +V + P +IS + + + L+ GIA G+ CA NP
Sbjct: 276 LELPDVFVVGDREHRVPNTILISIK--GVEGEAMLWDLNKAGIAASTGSACASEDLEANP 333
Query: 368 LLKFLGID-----SLCRASLAMYNTYEEADKFIETLKKSIQ 403
++ +G D + R SL+ + T EE D IE KK++Q
Sbjct: 334 VMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ 374
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors.
Length = 402
Score = 132 bits (334), Expect = 2e-31
Identities = 103/403 (25%), Positives = 179/403 (44%), Gaps = 57/403 (14%)
Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
IY D AA+ V + +M + ++ N H + E AR++V I A S
Sbjct: 5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADS 64
Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
+EI+FT ATES NL G + S G+ I+ S EH + + +L +R G + ++
Sbjct: 65 -REIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYL 122
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P + G ++E K + + T L++I H++N +G + I I I ER + VD +Q
Sbjct: 123 PPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS 182
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADVTQD 262
++V ++ D I+GHK+YGP GIG LY + ++ + GG E
Sbjct: 183 VGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHER------- 235
Query: 263 MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSR---LKEV 319
GT P Q + +G A +I ++ + ++ A + R L +
Sbjct: 236 ---------GMRSGTLPTHQIVGMGEAF----RIAKEEM---AQDTAHVLALRDRLLNGI 279
Query: 320 RGMQLV--NESLEDSPIISFRLGNIHPYDLALFLDGEGI-------AIRAGTHCANP--- 367
+ ++ V N LE R+ +++GE + A+ +G+ C +
Sbjct: 280 KSIEEVYLNGDLEH------RVPGNLNVSFN-YVEGESLIMALKDLAVSSGSACTSASLE 332
Query: 368 ---LLKFLGID-----SLCRASLAMYNTYEEADKFIETLKKSI 402
+L+ LGI+ S R ++ + T EE D ++ +K +I
Sbjct: 333 PSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAI 375
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase.
Length = 353
Score = 128 bits (324), Expect = 2e-30
Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 29/347 (8%)
Query: 26 YFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSV 85
Y D+ A+ V ++++ E+ N H + E+AR +V + A +
Sbjct: 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADT- 59
Query: 86 KEIIFTRSATESINLVSYGWGARHISTGDE-IVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
+E+IFT ATES NL G G + I+ S +EH + + P L R G ++ ++
Sbjct: 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALE-RNGFTVTYL 118
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P+D G +DE + + T L++I H++N G++ PI+EI + VD +Q
Sbjct: 119 PVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDP-----FMGGSEMIADV 259
VD+ D +GHK+YGP GIG L + R P F GG E
Sbjct: 179 VGKITVDLSADRIDLISCSGHKIYGPKGIGALVIR-KRGKPKAPLKPIMFGGGQER---- 233
Query: 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV 319
PGT P+ + +G A + + + ++ R + +R L+ +
Sbjct: 234 ------------GLRPGTLPVHLIVGMGEAAEIARR-NAQAWEVKLRAMRNQLRDALQTL 280
Query: 320 RGMQLVNESLEDSP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHCA 365
++L + E P I++F + ++ L + L + A+ G+ C+
Sbjct: 281 G-VKLNGDPAETIPHILNFSIDGVNSEALIVNLRAD-AAVSTGSACS 325
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 127 bits (321), Expect = 5e-30
Identities = 102/395 (25%), Positives = 166/395 (42%), Gaps = 58/395 (14%)
Query: 25 IYFD-NAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83
+Y D A + P+ V+D+++ + N H H D EKAR +V I A
Sbjct: 1 LYLDMQATTPIDPR-VLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD 59
Query: 84 SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143
KEIIFT ATES NL G + V++ H ++ Q+ G + +
Sbjct: 60 P-KEIIFTSGATESNNLAIKG-VMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTY 117
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203
+P+ + G +DE + T L+++ ++N +G + P++EI + E+ + D +Q
Sbjct: 118 LPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177
Query: 204 --GSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADV 259
G + VDV D+ D I+GHK+YGP G+G LY + ++P M GG E
Sbjct: 178 AVGKIP--VDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQE----- 230
Query: 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEK---IDRKSIFSYERELARYVRSRL 316
GT + LG A + K D K + + L +R++L
Sbjct: 231 -----------RGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKL 279
Query: 317 KEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGE-------GIAIRAGTHCANP-- 367
VR VN + R A +++GE +A+ +G+ C +
Sbjct: 280 GGVR----VNGPRDPEK----RYPGTLNLSFA-YVEGESLLMGLKEVAVSSGSACTSASL 330
Query: 368 ----LLKFLGID------SLCRASLAMYNTYEEAD 392
+L+ LG+ SL R + + T EE D
Sbjct: 331 EPSYVLRALGVPEEMAHGSL-RLGVGRFTTEEEVD 364
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 124 bits (314), Expect = 3e-29
Identities = 107/408 (26%), Positives = 181/408 (44%), Gaps = 65/408 (15%)
Query: 25 IYFDNAASAQKPQDVIDSIM--CTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINA 82
IY D +A+ V + +M T + N H + + AR+++ I A
Sbjct: 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGA 64
Query: 83 SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLV 142
+EI+FT ATES NL G + G I+ S EH + + L +R G +
Sbjct: 65 DP-REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVT 122
Query: 143 WVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
++ + G +++ + + + T L++I H++N +G + I I I ER I VD +
Sbjct: 123 YLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAA 182
Query: 203 QGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY-SKESRLNEMDPFM--GGSEMIADV 259
Q +D+ + D + HK+YGP GIG LY ++ R+ ++ M GG E
Sbjct: 183 QSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRV-RLEAQMHGGGHE----- 236
Query: 260 TQDMVTYADLPYR-FEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRL-K 317
R GT P Q + +G A +I ++ + + E E R +R RL
Sbjct: 237 ------------RGMRSGTLPTHQIVGMGEAA----RIAKEEMAT-ENERIRALRDRLWN 279
Query: 318 EVRGMQLV--NESLEDSPIISFRLGNIHPYDLAL---FLDGEG-------IAIRAGTHCA 365
++ ++ V N LE R+ P +L + +++GE +A+ +G+ C
Sbjct: 280 GIKDIEEVYLNGDLEQ------RV----PGNLNVSFNYVEGESLIMALKDLAVSSGSACT 329
Query: 366 NP------LLKFLGID-----SLCRASLAMYNTYEEADKFIETLKKSI 402
+ +L+ LG++ S R SL + T EE D IE ++KSI
Sbjct: 330 SASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSI 377
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 87.1 bits (216), Expect = 8e-18
Identities = 85/382 (22%), Positives = 148/382 (38%), Gaps = 44/382 (11%)
Query: 24 LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83
+IY D AA+ ++ + + S + N LH + + + R I
Sbjct: 1 MIYLDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGE 59
Query: 84 SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143
+ I FT TES L I+ + MEH S + L + G ++
Sbjct: 60 E-QGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTVTE 117
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203
+P+D G + + + +T T L +I H ++ +GT+ PI EI + + N+ D Q
Sbjct: 118 IPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177
Query: 204 GSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDM 263
+DV ++ D ++ HK+YGP G+G +Y ++P + + T +
Sbjct: 178 TFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVY--------INPQVRWKPVFPGTTHE- 228
Query: 264 VTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQ 323
F PGT + A A + + K ++ ++ +RS E Q
Sbjct: 229 -------KGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKE-----LRSYFLE----Q 272
Query: 324 LVNESLEDSP--IISFRLGNI-----HPYD---LALFLDGEGIAIRAGTHCANPLLKFLG 373
+ L + L +I + L + GIAI G+ C +G
Sbjct: 273 IQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQ------VG 326
Query: 374 IDSLCRASLAMYNTYEEADKFI 395
+ LA+ TYEEA +F+
Sbjct: 327 KQEPSKTMLAIGKTYEEAKQFV 348
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 53.3 bits (128), Expect = 1e-07
Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 62/300 (20%)
Query: 49 HEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGAR 108
H Y GL + A+ + EK ++ V + ++ T + TE++ L+ +GA
Sbjct: 63 HNYYGPSEGLPELREAIVKR-EKRKNGVD-----ITPDDVRVTAAVTEALQLI---FGAL 113
Query: 109 HISTGDEIVLSVMEHHSNIIPWY--FLRQRRGASLVWVPIDNQGFF-HIDEFKNRLTERT 165
+ GDEI++ P Y ++ G + + I+ +G+ ID+ + ++TE+T
Sbjct: 114 -LDPGDEILIP-----GPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKT 167
Query: 166 KLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDG------------SQGSVHNFV 210
K IA+ + +N G + +KEI IA E ++PV+ D S GS+ V
Sbjct: 168 KAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDV 227
Query: 211 DVQDIDCDWYIITG-HKLYGPSG--IGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYA 267
V ++ G K+Y +G +G +Y F+ +A+V + + A
Sbjct: 228 PV-------IVMNGLSKVYFATGWRLGYIY-----------FVDPEGKLAEVREAIDKLA 269
Query: 268 DLPYRFEPGTPPISQAIA-LGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVN 326
+ R P TP AIA L +DY+E+ +K +E Y+ RL E+ G+
Sbjct: 270 RI--RLCPNTPAQFAAIAGLTGPMDYLEEYMKKL-----KERRDYIYKRLNEIPGISTTK 322
>gnl|CDD|181782 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 49.5 bits (119), Expect = 2e-06
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 106 GARH---------ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFH--- 153
GAR GD +VL + H+++ Y +R G ++ VP +
Sbjct: 86 GAREGKFAVMHSLCKKGDYVVLDGLAHYTS----YVAAERAGLNVREVPKTGYPEYKITP 141
Query: 154 ------IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH 207
I+E K + L +TH+ G + K++ ++AHE IP L++G+
Sbjct: 142 EAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR 201
Query: 208 NFVDVQDIDCDWYIITGHKLY---GPSGI 233
VD + + D+ + +GHK PSG+
Sbjct: 202 MPVDGKKLGADFIVGSGHKSMAASAPSGV 230
>gnl|CDD|132344 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level alignment
(TIGR02326). The PhnW family is apparently a branch of a
larger tree including genes (AepZ) adjacent to others
responsible for the biosynthesis of
phosphonoacetaldehyde. The identity of the transfer
partner is unknown for these enzymes and considering the
reversed flux compared to PhnW, it may very well be
different.
Length = 355
Score = 46.6 bits (111), Expect = 1e-05
Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 31/211 (14%)
Query: 167 LIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITG 224
+A H G + P++ I ++A ++VD S G++ +D++++D D I +
Sbjct: 128 HVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIP--IDIEELDVDALIASA 185
Query: 225 HK-LYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADL---PYRFE-----P 275
+K L G G G + ++ L E A + + Y DL E
Sbjct: 186 NKCLEGVPGFGFVIARRDLL----------EASAGNARSL--YLDLYDQWAYMEKTGKWR 233
Query: 276 GTPPISQAIALGVALD-YVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPI 334
TPP A AL+ + + + R + L+ + G Q + SPI
Sbjct: 234 FTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPI 292
Query: 335 I-SFRLGNIHPYDLALF---LDGEGIAIRAG 361
I SF + +D F L G I G
Sbjct: 293 IVSFLYPDDPDFDFDDFYQELKERGFVIYPG 323
>gnl|CDD|180244 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 45.5 bits (109), Expect = 3e-05
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 138 GASLVWVPID-NQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHE 192
G V+VP GF +++ + +T +TK + + SN G V ++ I +A E
Sbjct: 136 GGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVE 195
Query: 193 RNIPVLVD 200
+I VL D
Sbjct: 196 HDIWVLSD 203
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 45.2 bits (108), Expect = 3e-05
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 34/168 (20%)
Query: 36 PQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS-----SVKEIIF 90
P V +++ E +H YM NA Y + R+ + +N + I+
Sbjct: 48 PAAVKEALRELAEEEDPGLHG---YMPNA---GYPEVREAIAESLNRRFGTPLTADHIVM 101
Query: 91 TRSATESINLVSYGWGARHI-STGDE-IVLSVMEHHSNIIPWYFLRQR-----RGASLVW 143
T A ++N+ + I + GDE IV + P YF+ R G LV
Sbjct: 102 TCGAAGALNVA-----LKAILNPGDEVIVFA---------P-YFVEYRFYVDNHGGKLVV 146
Query: 144 VPIDNQGFF-HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIA 190
VP D F +D + +T +TK + I +N G V + + +A
Sbjct: 147 VPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALA 194
>gnl|CDD|179819 PRK04311, PRK04311, selenocysteine synthase; Provisional.
Length = 464
Score = 44.8 bits (107), Expect = 3e-05
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 153 HIDEFKNRLTERTKLIAITHMSN--VLGTV--IPIKEICRIAHERNIPVLVD-GSQGSVH 207
H+ +++ + E T L+ H SN + G + + E+ + E +PV+ D GS GS+
Sbjct: 205 HLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS-GSLV 263
Query: 208 NF 209
+
Sbjct: 264 DL 265
>gnl|CDD|161897 TIGR00474, selA, seryl-tRNA(sec) selenium transferase. In
bacteria, the incorporation of selenocysteine as the
21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes SelA.
This model excludes homologs that appear to differ in
function from Frankia alni, Helicobacter pylori,
Methanococcus jannaschii and other archaea, and so on.
Length = 454
Score = 44.1 bits (105), Expect = 6e-05
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 135 QRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSN--VLGTV--IPIKEICRIA 190
++ GA LV V N+ H+ ++++ +TE T L+ H SN ++G + I E+ +
Sbjct: 184 EQSGAKLVEVGTTNRT--HLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALG 241
Query: 191 HERNIPVLVDGSQGS 205
E +PV+ D GS
Sbjct: 242 REHGLPVMED--LGS 254
>gnl|CDD|179178 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 44.1 bits (105), Expect = 6e-05
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 110 ISTGDEIVLSVMEHHSNIIPWY----FLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT 165
I GDE+++ P + + GA V+ + +D N +TE+T
Sbjct: 108 IDPGDEVIIP--------TPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKT 159
Query: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDID 216
K+I + +N G +IP ++I +I + V VD +V+ + D
Sbjct: 160 KVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVD------EAYVEFAEYD 204
>gnl|CDD|162909 TIGR02539, SepCysS, Sep-tRNA:Cys-tRNA synthase. Aminoacylation of
tRNA(Cys) with Cys, and cysteine biosynthesis in the
process, happens in Methanocaldococcus jannaschii and
several other archaea by misacylation of tRNA(Cys) with
O-phosphoserine (Sep), followed by modification of the
phosphoserine to cysteine. In some species, direct
tRNA-cys aminoacylation also occurs but this pathway is
required for Cys biosynthesis. Members of this protein
catalyze the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 43.6 bits (103), Expect = 8e-05
Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFL 133
+ + F+ + T A E V + GD +VL + H+++ Y
Sbjct: 58 EDLAEFLGMDEAR---VTHGAREGKFAVMHALCKE----GDWVVLDGLAHYTS----YVA 106
Query: 134 RQRRGASLVWVP--------IDNQGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIK 184
+R G ++ VP +D +G+ I+E ++ + L +TH+ G +
Sbjct: 107 AERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG 166
Query: 185 EICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK---LYGPSGIGGL 236
++ ++ E+ +P+L++ + V ++I D+ + +GHK GP G+ G+
Sbjct: 167 KVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGM 221
>gnl|CDD|163524 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions.
Length = 373
Score = 42.3 bits (100), Expect = 2e-04
Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 65/287 (22%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAITHMSNVLGTVIPIKEICRIAHERNIP 196
G L + P+D + + ++ + + T ++ I + LG + I+E+ +IA E I
Sbjct: 127 GLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTE-LGQIDDIEELSKIALENGIY 185
Query: 197 VLVDGSQGS-VHNFVDVQDIDCDW---------YIITGHKLYG----PSGIGGLYSKESR 242
+ VD + G V F+ + I HK+ G P+G G L+ +S
Sbjct: 186 LHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKM-GLSPIPAG-GILFRSKSY 243
Query: 243 LNEMD---PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
L + P++ Q +T GT + A A + Y+ + +
Sbjct: 244 LKYLSVDAPYL------TVKKQATIT----------GTRSGASAAATYAVIKYLGREGYR 287
Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIR 359
I + E RY+ LK++ ++ L I++F + + P ++ L G +
Sbjct: 288 KIVAECMENTRYLVEELKKIGFEPVIEPVLN---IVAFEVDD--PEEVRKKLRDRGWYV- 341
Query: 360 AGTHCANPLLKFLGIDSLCRASLAM------YNTYEEADKFIETLKK 400
S+ R A+ + T E ++F+E LK+
Sbjct: 342 ----------------SVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372
>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 427
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPV 197
G + W D+ F+ +T RTK I I ++N GTV I I +AH +P+
Sbjct: 127 GWQVRWADADD-----PASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPL 181
Query: 198 LVDGSQGS 205
+VD + S
Sbjct: 182 IVDNTLAS 189
>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase.
Length = 401
Score = 42.0 bits (99), Expect = 3e-04
Identities = 58/261 (22%), Positives = 96/261 (36%), Gaps = 34/261 (13%)
Query: 85 VKEIIFTRSATESINLVSYGWGARH------ISTGDEIVLSVMEHHSNIIPWYFLRQRRG 138
VK I T+S T I + G GA +S GD++V + S + W QR
Sbjct: 51 VKYIFKTKSGTPFI-FPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLN 107
Query: 139 ASLVWVPIDNQGFFHIDEFKNRLTERT----KLIAITHMSNVLGTVIPIKEICRIAHERN 194
+ V +D K++L + T K + + H G + + ++
Sbjct: 108 FDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQ 167
Query: 195 IP--VLVDG--SQGSVHNFVDVQDIDCDWYIITGHK--LYGPSGIGGLYSKESRLNEMDP 248
P +LVDG S G++ +D +D +TG + L P+G+G + + L
Sbjct: 168 HPALLLVDGVSSIGALDFRMDEWGVDV---ALTGSQKALSLPTGLGIVCASPKALEASK- 223
Query: 249 FMGGSEMIADVTQDMVTYADLPYR---FEPGTPPISQAIALGVALDYVEKIDRKSIFSYE 305
+ V D Y Y+ + P TP I L ALD + + +++ +
Sbjct: 224 ----TAKSPRVFFDWADYLKF-YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARH 278
Query: 306 RELARYVRSRLKEVRGMQLVN 326
L R V L
Sbjct: 279 ARLGEATR---LAVEAWGLKL 296
>gnl|CDD|181321 PRK08248, PRK08248, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 431
Score = 41.0 bits (96), Expect = 6e-04
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 155 DEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
+ F+ +T++TK + + N G V+ I+ + IAHE IP++VD + S
Sbjct: 140 ENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190
>gnl|CDD|162303 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 378
Score = 40.2 bits (94), Expect = 0.001
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 132 FLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAH 191
+ R G +V V + +D+ K L +TKL+ + +N L ++ I++I +AH
Sbjct: 104 QVVPRSGVVVVHVDTTD-----LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAH 158
Query: 192 ERNIPVLVDGSQGS 205
+N V+VD + S
Sbjct: 159 AQNALVVVDNTMMS 172
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli.
Length = 363
Score = 38.2 bits (89), Expect = 0.004
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 168 IAITHMSNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGH 225
IA+ H G + PI+ + ++AH +VD S G + +D+ ++ D+ I + +
Sbjct: 133 IALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP--IDIAELHIDYLISSAN 190
Query: 226 K-LYGPSGIGGLYSKESRL 243
K + G G G + ++++ L
Sbjct: 191 KCIQGVPGFGFVIARQAEL 209
>gnl|CDD|168777 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 37.7 bits (88), Expect = 0.005
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 23/133 (17%)
Query: 281 SQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLK---------EVRGMQLVN--ESL 329
+A AL +E ++R+ + + RE+ Y RL +VRG L+ E +
Sbjct: 330 GHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECV 389
Query: 330 EDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYE 389
D AL + I R HC L ++ LC S + T
Sbjct: 390 AD------------KGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRA 437
Query: 390 EADKFIETLKKSI 402
+ D+ + L+ +I
Sbjct: 438 QIDEIVAILRAAI 450
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities.
Length = 418
Score = 36.2 bits (84), Expect = 0.015
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 153 HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+EF+ + E TK + + N V I+ I +AH +P++VD
Sbjct: 131 DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVD 178
>gnl|CDD|179546 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 35.7 bits (83), Expect = 0.023
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 73 RDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVME----HHSNII 128
R KV + + ++++F E I ++S ++ G V++ H+ II
Sbjct: 70 RTKVAKHLGVDE-EQLLFGAGLDEVIQMISRAL----LNPGTNTVMAEPTFSQYRHNAII 124
Query: 129 PWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICR 188
GA + VP+ + G ++ + E+TK++ I + +N GT + +E+
Sbjct: 125 --------EGAEVREVPLKD-GGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLS 175
Query: 189 IAHE--RNIPVLVD 200
++ V++D
Sbjct: 176 FLESVPSHVLVVLD 189
>gnl|CDD|179465 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 35.5 bits (83), Expect = 0.024
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 135 QRRGASLVWVPIDNQGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHER 193
Q GA V VP + G H +D +T RT+L+ I + +N GT +P +E+ R
Sbjct: 126 QAVGAKPVEVPAKDYG--HDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERF-LAG 182
Query: 194 NIP--VLV 199
+P VLV
Sbjct: 183 -VPPDVLV 189
>gnl|CDD|181083 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 35.5 bits (82), Expect = 0.027
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 80 INASSVKEIIFTRSATESINLVSYGWGARHI-STGDEIVLSVMEHHSNIIPWYF-LRQRR 137
++ S EII T A+E+I++ R I G E++L + I P Y + +
Sbjct: 84 LHYSPESEIIVTIGASEAIDI-----AFRTILEPGTEVILP-----APIYPGYEPIIRLC 133
Query: 138 GASLVWVPIDNQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAH---ER 193
GA V++ + GF + +N +TE+T+ + + + SN G + +E+ IA ++
Sbjct: 134 GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK 193
Query: 194 NIPVLVD 200
NI VL D
Sbjct: 194 NIFVLSD 200
>gnl|CDD|162223 TIGR01141, hisC, histidinol-phosphate aminotransferase.
Histidinol-phosphate aminotransferase is a
pyridoxal-phosphate dependent enzyme.
Length = 346
Score = 35.3 bits (82), Expect = 0.028
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 32/155 (20%)
Query: 64 AVTDKYEKARDKVRRFINASSVK--------------EIIFTRSATESINLVSYGWGARH 109
+ DK+ R+ + + +I+ + E I L+ +
Sbjct: 36 KAKEALRAEADKLHRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLE-- 93
Query: 110 ISTGDEIVL-----SVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTER 164
GD +++ S+ E + I GA +V VP+D G +++ + ++
Sbjct: 94 --PGDAVLVPPPTYSMYEISAKI---------HGAEVVKVPLDEDGQLDLEDILVAIDDK 142
Query: 165 TKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLV 199
KL+ + +N G ++ +I + LV
Sbjct: 143 PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALV 177
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 34.9 bits (81), Expect = 0.037
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 49/168 (29%)
Query: 113 GDEIVLSVMEHHSNIIPWYF-----LRQRRGASLVWVPIDNQ-GFF-HIDEFKNRLTERT 165
GDE++L + PWYF L G V++P D G + +T RT
Sbjct: 114 GDEVILPL--------PWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALITPRT 164
Query: 166 KLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD-------GSQGSVHNFVDVQDI 215
+ IA+ +N G V P + E+ +A I +++D G+ H+
Sbjct: 165 RAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFA---- 220
Query: 216 DCDW-------------YIITGHKLYGPSGIGGLYSKESRLNEMDPFM 250
D DW Y +TGH++ G + + +R+ E++ FM
Sbjct: 221 DPDWDDTLVHLYSFSKSYALTGHRV------GAVVASPARIAEIEKFM 262
>gnl|CDD|177885 PLN02242, PLN02242, methionine gamma-lyase.
Length = 418
Score = 34.7 bits (80), Expect = 0.044
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 131 YFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE-RTKLIAITHMSNVLGTVIPIKEICRI 189
+FL ++ + +V I + ++ K + +TK++ +SN TV I E+ RI
Sbjct: 134 HFLPRKCNITTTFVDITD-----LEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARI 188
Query: 190 AHERNIPVLVD 200
AHE+ + V+VD
Sbjct: 189 AHEKGVTVVVD 199
>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional.
Length = 400
Score = 33.6 bits (77), Expect = 0.086
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 153 HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLV 199
+++E +N L TK++ + +N V IK I IAHE N LV
Sbjct: 138 NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLV 184
>gnl|CDD|169403 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 33.7 bits (77), Expect = 0.097
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 138 GASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHE 192
A + +P+ + F D E +T+RT++I I + +N G + K I IA +
Sbjct: 138 EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAED 197
Query: 193 RNIPVLVD 200
NI +L D
Sbjct: 198 YNIYILSD 205
>gnl|CDD|180929 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 33.0 bits (76), Expect = 0.13
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+DE + + TKLI I + +N G ++ ++EI IA + VL D
Sbjct: 143 LDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSD 192
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 32.9 bits (76), Expect = 0.15
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 113 GDEIVLSVMEHHSNIIPWY-----FLRQRRGASLVWVPIDNQGFFH---IDEFKNRLTER 164
GDEI+ V E P+Y F G +V V + FH +E + +T +
Sbjct: 112 GDEIL--VPE------PFYANYNGFATSA-GVKIVPVTTKIEEGFHLPSKEEIEKLITPK 162
Query: 165 TKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
TK I I++ N G V ++ + IA + ++ ++ D
Sbjct: 163 TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISD 201
>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.
Length = 386
Score = 32.9 bits (75), Expect = 0.17
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 157 FKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
+ L E+ KL+ + SN L V+ I +IC +A E +VD +
Sbjct: 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNT 175
>gnl|CDD|131432 TIGR02379, ECA_wecE, TDP-4-keto-6-deoxy-D-glucose transaminase.
This family consists of TDP-4-keto-6-deoxy-D-glucose
transaminases, the WecE (formerly RffA) protein of
enterobacterial common antigen (ECA) biosynthesis, from
enterobacteria. It also includes closely matching
sequence from species not expected to make ECA, but
which contain other genes for the biosynthesis of
TDP-4-keto-6-deoxy-D-Glc, an intermediate in the
biosynthesis of other compounds as well and the
substrate of WecA. This family belongs to the
DegT/DnrJ/EryC1/StrS aminotransferase family
(pfam01041).
Length = 376
Score = 32.9 bits (75), Expect = 0.17
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 25/134 (18%)
Query: 79 FINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWY-FLRQR- 136
N + K+ + T S T ++ + + I GDE+ I+P Y F+
Sbjct: 40 LENRTGTKKALLTPSCTAALEMAAL---LLDIQPGDEV----------IMPSYTFVSTAN 86
Query: 137 ----RGASLVWVPIDNQGFFHIDEFK--NRLTERTKLIAITHMSNVLGTVIPIKEICRIA 190
RGA +V+V I +IDE + +T RTK I H + V + I +A
Sbjct: 87 AFVLRGAKIVFVDIRPDTM-NIDETLIESAITHRTKAIVPVHYAGVACDMDTIMA---LA 142
Query: 191 HERNIPVLVDGSQG 204
++ + V+ D +QG
Sbjct: 143 NKHQLFVIEDAAQG 156
>gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 32.5 bits (75), Expect = 0.21
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 164 RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS---------VHNFVDVQD 214
R KLIA + ++ G + P+ EIC +A + + V+VD S V D
Sbjct: 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMD 233
Query: 215 -IDCDWYIITG 224
+D IITG
Sbjct: 234 RVD----IITG 240
>gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 32.5 bits (75), Expect = 0.22
Identities = 65/286 (22%), Positives = 105/286 (36%), Gaps = 66/286 (23%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPV 197
G L P+D+ + ++ + + T I + LG V PI E+ +IA E I +
Sbjct: 125 GVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFL 184
Query: 198 LVDGSQGSVHNFV----------DVQDIDCDWYIITGHKLYG----PSGIGGLYSKESRL 243
VD + G FV D D I HK+ G P+G G L+ ES L
Sbjct: 185 HVDAAFGG---FVIPFLDDPPNFDFSLPGVDSITIDPHKM-GLAPIPAG-GILFRDESYL 239
Query: 244 NEMD---PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300
+ + P++ Q +T GT + A + Y+ + +
Sbjct: 240 DALAVDTPYLTSK------KQATLT----------GTRSGAGVAATYAVMKYLGREGYRK 283
Query: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360
+ E R++ LKE RG + V E I++F N P ++ L G +
Sbjct: 284 VVERCMENTRWLAEELKE-RGFEPVIEP--VLNIVAFDDPN--PDEVREKLRERGWRV-- 336
Query: 361 GTHCANPLLKFLGIDSLCRASLAM------YNTYEEADKFIETLKK 400
S+ R A+ + T E + F+E LK+
Sbjct: 337 ---------------SVTRCPEALRIVCMPHVTREHIENFLEDLKE 367
>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated.
Length = 390
Score = 32.3 bits (74), Expect = 0.22
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 109 HISTGDEIVLS------VMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLT 162
+ GD +V S + I R G +V + + +D ++ +
Sbjct: 96 LLQAGDHVVSSRSLFGSTVSLFEKIFA------RFGIETTFVDLTD-----LDAWRAAVR 144
Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
TKL + SN L + I + IAH ++VD
Sbjct: 145 PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVD 182
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 32.4 bits (74), Expect = 0.24
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 60 YMANA--VTDKYEKARDKVRRF-INASSVKEIIFTRSATESINLVSYGWGARHI-STGDE 115
Y ANA + + E A+ +RF ++ EII T A++++++ R I + GDE
Sbjct: 53 YTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDV-----AMRAIINPGDE 107
Query: 116 IVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHM 173
++ ++E + + + L G V V + F + + + +T +TK I +
Sbjct: 108 VL--IVE--PSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSP 163
Query: 174 SNVLGTVI---PIKEICRIAHERNIPVLVD 200
+N G V+ ++EI I + ++ VL D
Sbjct: 164 NNPTGAVLNKSELEEIAVIVEKHDLIVLSD 193
>gnl|CDD|181114 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 31.9 bits (73), Expect = 0.27
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 72 ARDKVRRF-INASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPW 130
A + RR+ + E++ T ATE+I G + GDE++L I P+
Sbjct: 71 AAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL----VEPGDEVLL--------IEPY 118
Query: 131 Y----FLRQRRGASLVWVPI--DNQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIPI 183
Y + GA V VP+ D +GF +D + +T RT+ + + N GTV+
Sbjct: 119 YDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTA 178
Query: 184 KE---ICRIAHERNIPVLVD 200
E I +A E ++ V+ D
Sbjct: 179 AELAAIAELAVEHDLLVITD 198
>gnl|CDD|130331 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs.
Length = 401
Score = 31.7 bits (72), Expect = 0.38
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 147 DNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
D + + ++ + E+T + + + SN G+V ++EI +A + +P++ D
Sbjct: 151 DKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIAD 207
>gnl|CDD|183994 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 31.6 bits (72), Expect = 0.42
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
ID+ ++++T RTK I I + +N G + P +++I IA E + + D
Sbjct: 271 IDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSD 320
>gnl|CDD|168313 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 31.2 bits (71), Expect = 0.49
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 111 STGDEIVLSVMEHHSNIIPWYFLR----QRRGASLVWVPIDNQGFFHIDEFKNRLTERTK 166
GDEI+L+ P+YF G + VP D+ + + +T +T+
Sbjct: 111 DPGDEIILNT--------PYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTR 162
Query: 167 LIAITHMSNVLGTVIP---IKEICRIAHERNI 195
I +N G V P ++ + +I E I
Sbjct: 163 AIVTISPNNPTGVVYPEALLRAVNQICAEHGI 194
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 31.0 bits (71), Expect = 0.49
Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 57/199 (28%)
Query: 169 AITHMSNV-----LGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYI 221
ITH++ V G + P+ EI +A ++VD S G++ +D+ ++ D I
Sbjct: 131 RITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIP--IDIAELGIDALI 188
Query: 222 ITGHK-LYGPSGIGGLYSKESRLNE---------MDPFMGGSEMIADVTQDMVTYADLPY 271
+ +K + G G G + ++ S L +D + + M Q +
Sbjct: 189 SSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYM-EKTGQ---------W 238
Query: 272 RFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERE------LARYVRSRLKEVRGMQ-- 323
RF TPP A AL E E ARY ++ V GM+
Sbjct: 239 RF---TPPTHVVAAFYQALL-----------ELEEEGGVPARGARYANNQRTLVAGMRAL 284
Query: 324 ----LVNESLEDSPII-SF 337
L++ ++ SPII +F
Sbjct: 285 GFEPLLDAEIQ-SPIIVTF 302
>gnl|CDD|162547 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives.
Length = 402
Score = 31.2 bits (71), Expect = 0.50
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 46/194 (23%)
Query: 164 RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIIT 223
R K+IA + ++ G + PI+EIC +A + +D VH
Sbjct: 177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLD----EVHAV-------------- 218
Query: 224 GHKLYGPSGIGGLYSKESRLNEMDPF----------MGGSEMIADVTQ--DMV-TYADLP 270
LYGP G GG+ ++ ++ +D +GG IA + D + +YA
Sbjct: 219 --GLYGPRG-GGIAERDGLMHRIDIIEGTLAKAFGVVGG--YIAASRKLIDAIRSYAP-G 272
Query: 271 YRFEPGTPPISQAIAL-GVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESL 329
+ F PP A A + + R++ +E + +++ L+ G+ ++
Sbjct: 273 FIFTTSLPPAIAAGATASIRHLKESQDLRRA----HQENVKRLKNLLEA-LGIPVIP--- 324
Query: 330 EDSPIISFRLGNIH 343
S I+ +G+
Sbjct: 325 NPSHIVPVIIGDAA 338
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 31.0 bits (70), Expect = 0.55
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 162 TERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYI 221
+R KLIA + ++ G + PI+ IC +A N VD VH
Sbjct: 176 PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVD----EVHAV------------ 219
Query: 222 ITGHKLYGPSGIGGLYSKESRLNEMDPFMG 251
LYG G GG+ ++ ++ +D G
Sbjct: 220 ----GLYGARG-GGIAERDGLMDRIDMIQG 244
>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 425
Score = 31.0 bits (70), Expect = 0.57
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
ERTK + + N G +I I+ + AH +P++VD +
Sbjct: 142 ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 30.9 bits (70), Expect = 0.69
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 346 DLALFLDGEGIAIRAGTHCANPLLKF----LGIDSLCRASLAMYNTYEEADKFIETLKK 400
DL + + G+G ++A PL+ F LG L+ Y T EE D+F+E LK
Sbjct: 43 DLIIVVGGDGTVLKAAKKVGTPLVGFKAGRLGF-------LSSY-TLEEIDRFLEDLKN 93
>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
Length = 386
Score = 30.6 bits (69), Expect = 0.75
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 155 DEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+ +N++ TKLI + N +I +K++ R+A + V+VD
Sbjct: 137 ADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVD 182
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 30.7 bits (70), Expect = 0.77
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 113 GDEIVLSVMEHHSNIIPW-----Y-FLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTK 166
GDE+ I W Y L Q GA+ V VP+ +D +T+RT+
Sbjct: 98 GDEV----------IFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTR 147
Query: 167 LIAITHMSNVLGTVIPIKEICR 188
LI + + +N GTV+ E+ R
Sbjct: 148 LIFVCNPNNPTGTVVTPAELAR 169
>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase.
This family consists of O-succinylhomoserine
(thiol)-lyase, one of three different enzymes designated
cystathionine gamma-synthase and involved in methionine
biosynthesis. In all three cases, sulfur is added by
transsulfuration from Cys to yield cystathionine rather
than by a sulfhydrylation step that uses H2S directly
and bypasses cystathionine.
Length = 382
Score = 30.5 bits (69), Expect = 0.79
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
L ++ KL+ I SN L V+ I +IC +A V+VD
Sbjct: 133 LAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVD 172
>gnl|CDD|179878 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
Provisional.
Length = 364
Score = 30.2 bits (68), Expect = 0.87
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 135 QRRGASLVWVP-IDNQGFFHIDE---FKNRLTERTKLIAITHMSNVLGTVIPIKEICRIA 190
+ + A LV VP +D FH D L KL+ + SN G+ I + +I R
Sbjct: 119 RLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERAL 178
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 30.4 bits (69), Expect = 0.89
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+ + +T TK I I +N L I I +IA + + ++VD
Sbjct: 126 LKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVD 172
>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 432
Score = 30.4 bits (68), Expect = 0.93
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 138 GASLVWVPIDNQGF---FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERN 194
G SL + ID F DE ++TKL+ + N V+ KE A E
Sbjct: 118 GVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELE 177
Query: 195 IPVLVDGS 202
+P +VD +
Sbjct: 178 VPFIVDNT 185
>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 30.2 bits (68), Expect = 1.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
L ++ KLI + SN L V+ I E+C+ A V VD +
Sbjct: 135 LAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNT 176
>gnl|CDD|180573 PRK06460, PRK06460, hypothetical protein; Provisional.
Length = 376
Score = 30.2 bits (68), Expect = 1.1
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 162 TERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
++R ++ + +++N L V+ I E+ ++ E ++VD +
Sbjct: 128 SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDAT 168
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine.
Length = 391
Score = 29.9 bits (67), Expect = 1.1
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 155 DEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
+E K + + TK++ +N +I ++ +CR AH + + V+VD +
Sbjct: 135 EEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182
>gnl|CDD|181129 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional.
Length = 388
Score = 30.0 bits (68), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 155 DEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
D + +T RTKLI + +N L ++ I + +AH+ V+VD
Sbjct: 137 DAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVD 182
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 29.8 bits (67), Expect = 1.4
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 34/242 (14%)
Query: 70 EKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIP 129
EK R+++ R+ + I + E I+L+ + I+ GD ++ H +
Sbjct: 62 EKLREELARYCSVVP-TNIFVGNGSDEIIHLIMLAF----INKGDVVIYP----HPSFAM 112
Query: 130 WYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE-RTKLIAITHMSNVLGTVIPIKEICR 188
+ + GA + V + + + F + + + KL+ + + +N G+VI ++I +
Sbjct: 113 YSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIK 172
Query: 189 IAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDP 248
I + V+VD + + V I+ +I L G+ GL + NE
Sbjct: 173 IIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE--- 229
Query: 249 FMGGSEMIADVTQDMVTYADL---PYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYE 305
+++ Y +L PY +SQ IAL V V K +R + E
Sbjct: 230 -------------NILKYLNLVKSPYNIN----SLSQVIALKVLRTGVLK-ERVNYILNE 271
Query: 306 RE 307
RE
Sbjct: 272 RE 273
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 29.7 bits (67), Expect = 1.6
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYII 222
R KL+A + ++ G + PI EIC +A + +D VH
Sbjct: 176 HRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLD----EVH--------------- 216
Query: 223 TGHKLYGPSGIGGLYSKE 240
LYGP G GG+ +E
Sbjct: 217 -AVGLYGPRG-GGIAERE 232
>gnl|CDD|181860 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 150 GFF--HIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGSQG 204
G F H+D + E T I ++ +N G V+ ++++ +A + NIP+L+D + G
Sbjct: 163 GQFKYHVDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYG 222
Query: 205 SVH---NFVDV 212
F +
Sbjct: 223 PPFPGIIFSEA 233
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function.
Length = 393
Score = 29.4 bits (66), Expect = 1.7
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 154 IDEFKNRLTE------RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD------- 200
+ + + +L E R +LIA + ++ G + P+ EIC +A + + V+VD
Sbjct: 154 MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGF 213
Query: 201 -GSQG-SVHNFVDVQD-IDCDWYIITG 224
G G H V +D IITG
Sbjct: 214 LGPTGRGSHELCGVMGRVD----IITG 236
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 186 ICRIAHERNIPVLVDGSQGSVHNF------VDVQDIDCDWYIITGH 225
+ RIAHE +I V++D + S N VD+ YI+ GH
Sbjct: 168 LSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIV-GH 212
>gnl|CDD|181245 PRK08134, PRK08134, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 433
Score = 28.9 bits (65), Expect = 2.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
ID ++ + T+L+ + N V+ I + IAHE +P+LVD
Sbjct: 139 IDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVD 185
>gnl|CDD|179838 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated.
Length = 481
Score = 28.9 bits (66), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHE 192
+P + G ++ K + E T + +T+ N LG I EI I HE
Sbjct: 188 IPSNEDGLVDLEALKAAVGEDTAALMLTN-PNTLGLFERNILEIAEIVHE 236
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 28.6 bits (64), Expect = 2.8
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+DE + + +RTK + +T+ SN G+ +++I R+ E +P++ D
Sbjct: 167 LDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISD 216
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 28.6 bits (65), Expect = 2.9
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+D+ ++++T RTK I I + +N G V ++EI IA + N+ + D
Sbjct: 158 LDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFAD 207
>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase.
Length = 464
Score = 28.5 bits (63), Expect = 3.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 153 HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
++DE + +TKL+ + +N + I++I +AH + VLVD S
Sbjct: 206 NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNS 255
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 287
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 211 DVQDIDCDWYIITGHKLYGPSGI 233
D + ID W I TG + GP GI
Sbjct: 213 DPETIDKTWMIATGAPM-GPFGI 234
>gnl|CDD|180764 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 178 GTVIP-----IKEICRIAHERNIPVLVDGSQ 203
G VIP ++ + RI E IP++VD Q
Sbjct: 244 GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ 274
>gnl|CDD|181130 PRK07812, PRK07812, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 436
Score = 28.2 bits (63), Expect = 3.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
+D ++ + TK +SN V+ I + +AHE +P++VD
Sbjct: 145 LDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVD 191
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase. This model
represents 8-amino-7-oxononanoate synthase, the BioF
protein of biotin biosynthesis. This model is based on a
careful phylogenetic analysis to separate members of
this family from 2-amino-3-ketobutyrate and other
related pyridoxal phosphate-dependent enzymes. In
several species, including Staphylococcus and Coxiella,
a candidate 8-amino-7-oxononanoate synthase is confirmed
by location in the midst of a biotin biosynthesis operon
but scores below the trusted cutoff of this model.
Length = 360
Score = 28.0 bits (63), Expect = 4.0
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 45/201 (22%)
Query: 178 GTVIPIKEICRIAHERNIPVLVD----------GSQGSVHNFVDVQDIDCDWYIITGHKL 227
G + P+ ++ +A ++VD +G++ +F ++ D + T K
Sbjct: 160 GDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHF-GLKPEPVDIQVGTLSKA 218
Query: 228 YGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALG 287
G G ++ GS+ + D ++ A F PP + A A
Sbjct: 219 LG--SYGA-------------YVAGSQALIDY---LINRAR-TLIFSTALPP-AVAAAAL 258
Query: 288 VALDYVEKID--RKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHP- 344
AL+ +++ R+ + L +R+ L E G L+ +PI+ +G+
Sbjct: 259 AALELIQEEPWRREKLL----ALIARLRAGL-EALGFTLMP---SCTPIVPVIIGDNASA 310
Query: 345 YDLALFLDGEGI---AIRAGT 362
LA L +GI AIR T
Sbjct: 311 LALAEELQQQGIFVGAIRPPT 331
>gnl|CDD|147827 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. Some archaeal members are annotated as being
pyridoxal phosphate-dependent enzymes.
Length = 389
Score = 28.3 bits (63), Expect = 4.0
Identities = 63/365 (17%), Positives = 116/365 (31%), Gaps = 50/365 (13%)
Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
+ +T++ K + + VK AT L W + ++
Sbjct: 53 VLAKLTNELVK---DFLKLLGLREVKNCFVVPLATGMSLLCMLSWRRKR-PKAKYVIWPR 108
Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKN------RLTERTKLIAITHMS 174
++ S+I G V G + I + + E L ++ S
Sbjct: 109 IDQKSSIKAAERA----GFEPRLVETVLDGDYLITDVNDVETIIEEKGEEVILAVLSTTS 164
Query: 175 NVLGTVI-PIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGI 233
+KEI +I E ++P LV+G+ G +Q + I H+ G
Sbjct: 165 CFAPRSPDNVKEIAKICAEYDVPHLVNGAYG-------IQSEETIRLIAAAHEC----GR 213
Query: 234 GGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYV 293
+ N + P G IA + + Y PG + + L +
Sbjct: 214 VDAVVQSLDKNFIVPVGGAI--IAAFDESFIQEISEEY---PGRASARPSKDKLITLLSL 268
Query: 294 EKIDRKSIFSYERELARYVRSRLK---EVRGMQLVNESLEDSPIISFRLGNIHP------ 344
++ ++E+ +R LK E G QL++ +PI S
Sbjct: 269 GCKAYLALMKEQKEMFPLLRELLKDLAEEVGEQLLDVP--HNPISSAMTLETLDEISKKG 326
Query: 345 -YDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCR-----ASLAMYNTYEEADKFIETL 398
DL L + ++P G + R +++ M E+ D IE L
Sbjct: 327 RTDLGSELFSRRVTGARVVRSSDPFGTIEGCEYHGRYLNIASAIGM--KDEDVDYVIERL 384
Query: 399 KKSIQ 403
+ ++
Sbjct: 385 DEILE 389
>gnl|CDD|180479 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 28.2 bits (63), Expect = 4.0
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 136 RRGASLVWVPIDNQGFFHIDEFKNRLT---------ERTKLIAITHMSNVLG---TVIPI 183
R GA ++ VPI ++ E +LT E T+LI + N LG T I
Sbjct: 126 RFGAEVIEVPIYSE------ECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEI 179
Query: 184 KEICRIAHERNIPVLVD 200
KE IA + + +L D
Sbjct: 180 KEFAEIARDNDAFLLHD 196
>gnl|CDD|182686 PRK10736, PRK10736, hypothetical protein; Provisional.
Length = 374
Score = 28.0 bits (63), Expect = 4.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 331 DSPIISFRLGNIHPYDLALFLDGE 354
DS +L I Y ALF+ GE
Sbjct: 78 DSEFYPPQLLAIADYPGALFVSGE 101
>gnl|CDD|184383 PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 363
Score = 28.0 bits (63), Expect = 4.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 307 ELARYVRSRLKEVRGMQLVNE 327
LAR VR +++ G+ LV E
Sbjct: 335 ALAREVRDGVRDAFGVTLVPE 355
>gnl|CDD|179033 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 28.2 bits (64), Expect = 4.5
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 137 RGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIP 196
+G +V VP ++ G ++ + + + T + + + N G + ++EI IAH
Sbjct: 178 QGIEVVEVPYED-GVTDLEALEAAVDDDTAAVVVQY-PNFFGVIEDLEEIAEIAHAGGAL 235
Query: 197 VLV 199
+V
Sbjct: 236 FIV 238
>gnl|CDD|130392 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis.
Length = 380
Score = 27.9 bits (62), Expect = 4.8
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 125 SNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIK 184
S I+P R G + +V + ++ ++ + TKL+ + SN LG ++ I
Sbjct: 111 SEILP------RFGIEVSFVDPTD-----LNAWEAAVKPNTKLVFVETPSNPLGELVDIA 159
Query: 185 EICRIAHERNIPVLVDGS 202
+ +AH ++VD
Sbjct: 160 ALAELAHAIGALLVVDNV 177
>gnl|CDD|179957 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 27.8 bits (63), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 249 FMGGSEMIADVTQDMVTYADLPYRFEPGTP 278
FMG S +AD+ Q Y LPY+F
Sbjct: 88 FMGRS--LADIQQ---RYPHLPYQFVASEN 112
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 27.6 bits (62), Expect = 5.8
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 138 GASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAH---E 192
G V V + F +D F ++ RT+LI + N GTV ++ +
Sbjct: 136 GGRAVRVALQPPDF-RVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAG 194
Query: 193 RNIPVLVD 200
+I VL D
Sbjct: 195 TDIYVLSD 202
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 27.8 bits (62), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 306 RELARYVRSRLKEVRGMQLVN 326
R AR++ + RGM LVN
Sbjct: 195 RRFARHLIDLARHGRGMHLVN 215
>gnl|CDD|130332 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine
aminotransferases. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 27.7 bits (62), Expect = 6.2
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 163 ERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
E+T I + + SN G+V +++I +A + IP++ D
Sbjct: 168 EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIAD 208
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 27.2 bits (60), Expect = 7.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 18/74 (24%)
Query: 29 NAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEI 88
N A+ Q QD Y I+ VT+ +E A+ K+R +IN S I
Sbjct: 375 NDAAVQPYQDQ----------GYQKIY--------FVTESFEDAKRKLRNYINTSGRPFI 416
Query: 89 IFTRSATESINLVS 102
+ TE++ ++
Sbjct: 417 VRFDPITETVEVLD 430
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 27.0 bits (60), Expect = 8.5
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
+ + + +T +TK I + +N G V ++EI +IA E ++ ++ D
Sbjct: 152 VKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISD 201
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 26.9 bits (60), Expect = 8.8
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 152 FHIDE-FKNRLTERTKLIAITHMSNVLGTVIPIKEICRIA---HERNIPVLVD 200
F +E + E L+ + + +N G +I +E+ +I +RNI +++D
Sbjct: 128 FAANEIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIID 180
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 27.0 bits (60), Expect = 8.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIA---ITHMSNVLGTVIPIKEICRIAHERN 194
G +V V D +G +I+E + +A +T+ S I EIC I H+
Sbjct: 637 GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNG 696
Query: 195 IPVLVDGS 202
V +DG+
Sbjct: 697 GQVYMDGA 704
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.414
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,760,105
Number of extensions: 446300
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 105
Length of query: 406
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 310
Effective length of database: 3,920,105
Effective search space: 1215232550
Effective search space used: 1215232550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)