Query gi|254781063|ref|YP_003065476.1| hypothetical protein CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 105 out of 1277 Neff 5.8 Searched_HMMs 33803 Date Wed Jun 1 21:34:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781063.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cq1_A Putative uncharacteriz 99.9 5.2E-27 1.5E-31 182.8 7.6 99 29-128 4-102 (103) 2 >3lno_A Putative uncharacteriz 99.9 3.4E-23 1E-27 160.0 7.1 88 27-114 4-92 (92) 3 >1uwd_A Hypothetical protein T 99.9 6.7E-22 2E-26 152.1 7.5 85 29-113 4-88 (88) 4 >1veh_A NIFU-like protein hiri 87.4 0.65 1.9E-05 26.1 3.6 78 23-104 5-84 (92) 5 >1xhj_A Nitrogen fixation prot 83.3 3.6 0.00011 21.6 7.8 78 30-113 6-85 (88) 6 >2z51_A NIFU-like protein 2, c 78.5 3.7 0.00011 21.6 4.5 50 54-104 23-74 (81) 7 >2z51_A NIFU-like protein 2, c 66.8 7.1 0.00021 19.9 3.7 66 31-103 4-70 (73) 8 >1mwy_A ZNTA; open-faced beta- 61.1 9.1 0.00027 19.2 3.4 36 70-108 4-39 (73) 9 >1opz_A Potential copper-trans 60.7 11 0.00031 18.8 3.6 36 69-107 6-41 (76) 10 >1qup_A Superoxide dismutase 1 54.6 8.3 0.00025 19.5 2.3 34 68-107 7-40 (73) 11 >1th5_A NIFU1; iron-sulfur clu 53.0 8.1 0.00024 19.5 2.0 66 31-100 4-70 (74) 12 >1jk9_B CCS, copper chaperone 47.2 13 0.00038 18.3 2.3 34 68-107 8-41 (76) 13 >1yg0_A COP associated protein 46.2 21 0.00061 17.1 3.2 51 70-123 2-59 (66) 14 >1p6t_A Potential copper-trans 46.0 23 0.00068 16.8 4.4 37 68-107 5-41 (72) 15 >1q8l_A Copper-transporting AT 43.2 23 0.00069 16.8 3.1 49 67-118 7-63 (84) 16 >1aw0_A Menkes copper-transpor 43.0 26 0.00075 16.5 3.5 47 70-119 4-58 (72) 17 >1p6t_A Potential copper-trans 42.9 25 0.00073 16.6 3.2 49 70-121 3-59 (79) 18 >1sb6_A Copper chaperone scatx 41.9 21 0.00062 17.1 2.7 34 71-107 3-36 (64) 19 >1kvi_A Copper-transporting AT 40.7 28 0.00082 16.3 4.8 38 67-107 6-43 (79) 20 >3dxs_X Copper-transporting AT 40.5 28 0.00083 16.3 3.8 48 70-120 3-58 (74) 21 >2aj0_A Probable cadmium-trans 40.1 28 0.00084 16.3 3.5 34 71-107 5-38 (71) 22 >3cjk_B Copper-transporting AT 39.9 29 0.00085 16.2 4.0 35 70-107 3-37 (75) 23 >1cpz_A Protein (COPZ); copper 38.7 30 0.00088 16.1 3.1 47 72-121 3-52 (68) 24 >2rop_A Copper-transporting AT 37.3 31 0.00093 16.0 4.2 39 66-107 15-53 (98) 25 >2kkh_A Putative heavy metal t 36.9 32 0.00094 16.0 4.3 38 67-107 14-51 (95) 26 >2ew9_A Copper-transporting AT 36.4 32 0.00096 15.9 4.2 48 70-120 5-60 (73) 27 >2ew9_A Copper-transporting AT 36.3 33 0.00097 15.9 4.4 35 70-107 5-39 (76) 28 >2g9o_A Copper-transporting AT 35.6 34 0.00099 15.8 3.3 48 70-120 4-59 (90) 29 >1fvq_A Copper-transporting AT 34.9 27 0.0008 16.4 2.3 50 70-122 3-59 (72) 30 >2roe_A Heavy metal binding pr 33.3 24 0.00072 16.7 1.9 32 73-107 4-35 (66) 31 >1cc8_A Protein (metallochaper 33.0 26 0.00078 16.5 2.0 34 68-107 6-40 (73) 32 >1osd_A MERP, hypothetical pro 32.9 37 0.0011 15.6 4.0 35 70-107 4-38 (72) 33 >3io1_A Aminobenzoyl-glutamate 32.2 38 0.0011 15.5 5.7 85 31-115 31-120 (120) 34 >2qif_A Copper chaperone COPZ; 32.1 38 0.0011 15.5 3.8 34 71-107 4-37 (69) 35 >2i0k_A Oxidoreductase; MIX al 31.2 40 0.0012 15.4 3.2 43 71-113 242-284 (288) 36 >1yjr_A Copper-transporting AT 30.0 41 0.0012 15.3 3.3 34 71-107 6-39 (75) 37 >2rop_A Copper-transporting AT 29.9 33 0.00098 15.8 2.1 39 66-107 17-55 (104) 38 >3js8_A Cholesterol oxidase; c 29.9 42 0.0012 15.3 3.6 44 71-114 224-267 (278) 39 >2crl_A Copper chaperone for s 29.6 23 0.00067 16.8 1.2 33 69-107 21-53 (98) 40 >1xmb_A IAA-amino acid hydrola 29.1 43 0.0013 15.2 4.3 85 25-111 20-111 (114) 41 >1jww_A Potential copper-trans 28.4 33 0.00099 15.8 1.9 35 70-107 4-38 (80) 42 >2k2p_A Uncharacterized protei 27.4 31 0.00092 16.0 1.6 37 68-107 21-57 (85) 43 >2gcf_A Cation-transporting AT 24.8 52 0.0015 14.7 5.1 43 75-123 12-61 (73) 44 >1y3j_A Copper-transporting AT 23.9 35 0.001 15.7 1.4 35 70-107 4-38 (77) 45 >1zu0_A Chitin oligosaccharide 23.8 42 0.0012 15.2 1.7 42 32-73 30-71 (74) 46 >3euh_C MUKE, chromosome parti 22.6 56 0.0017 14.5 2.2 44 18-71 53-96 (105) 47 >1q3q_A Thermosome alpha subun 21.9 49 0.0014 14.8 1.8 75 22-96 16-98 (105) 48 >3iwl_A Copper transport prote 21.5 37 0.0011 15.5 1.1 27 69-101 4-30 (68) 49 >3c7m_A Thiol:disulfide interc 21.5 60 0.0018 14.3 2.5 40 71-110 20-61 (99) 50 >3hsr_A HTH-type transcription 21.2 48 0.0014 14.9 1.6 46 51-97 73-118 (119) 51 >1a6d_B Thermosome (beta subun 20.2 64 0.0019 14.1 3.2 69 23-95 17-92 (104) No 1 >>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:) Probab=99.94 E-value=5.2e-27 Score=182.84 Aligned_cols=99 Identities=37% Similarity=0.684 Sum_probs=95.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 35899999999720888889984332040132156039969999996589885178999999999970998661699999 Q gi|254781063|r 29 LERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSIT 108 (129) Q Consensus 29 ~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~ 108 (129) ...++++|+++|++|.||++++|||+||||++|.++ ++.|.|.|++|+++||+.+.|.++|++++++++|+.+|+|+++ T Consensus 4 ~~~~~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~-~~~V~v~l~l~~~~~~~~~~i~~~i~~~l~~l~gv~~V~V~~~ 82 (103) T 3cq1_A 4 RNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE-PPRAYVRXTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103) T ss_dssp CSHHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE-TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC T ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 837899999998168898999884445772157886-5835728807999986789999999999981899750899999 Q ss_pred ECCCCCCCCCCHHHHHHCCC Q ss_conf 77889833069899996079 Q gi|254781063|r 109 FDPPWTPDLMSEEAQIATGY 128 (129) Q Consensus 109 ~~p~W~~~~is~~~r~~lG~ 128 (129) |+|+|+++|||+++|.+||| T Consensus 83 ~~~~~~~~~~~~~~r~~lg~ 102 (103) T 3cq1_A 83 FEPPWTLARLSEKARRLLGW 102 (103) T ss_dssp CSSCCCGGGCCSGGGTTTC- T ss_pred ECCCCCHHHCCHHHHHHCCC T ss_conf 66999957775999997289 No 2 >>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} (A:1-92) Probab=99.88 E-value=3.4e-23 Score=159.95 Aligned_cols=88 Identities=32% Similarity=0.672 Sum_probs=83.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEEEE Q ss_conf 653589999999972088888998433204013215603996999999658988517899999999997-0998661699 Q gi|254781063|r 27 EDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVG-AVEGISGVEV 105 (129) Q Consensus 27 ~~~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~~~i~~al~-~~~gv~~V~V 105 (129) .+...++++|+++|++|+|||+|+|||+|||||+|.++++|+|.|.|++|+++||+...|.++++++++ .++|+.+|+| T Consensus 4 ~~~~~~~~~V~~aL~~V~DP~~g~div~lglV~~i~v~~~~~V~v~l~lt~p~~~~~~~i~~~i~~al~~~l~gv~~v~V 83 (92) T 3lno_A 4 XSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITXTXTSIGCPXAGQIVSDVKKVLSTNVPEVNEIEV 83 (92) T ss_dssp HHHHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 46788999999998088899999894455875778974499799999958999776999999999999973899743999 Q ss_pred EEEECCCCC Q ss_conf 999778898 Q gi|254781063|r 106 SITFDPPWT 114 (129) Q Consensus 106 ~~~~~p~W~ 114 (129) +++|+|||+ T Consensus 84 ~~~~~ppwt 92 (92) T 3lno_A 84 NVVWNPPWS 92 (92) T ss_dssp EECCSSCCC T ss_pred EEEECCCCC T ss_conf 999679999 No 3 >>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88) Probab=99.86 E-value=6.7e-22 Score=152.15 Aligned_cols=85 Identities=44% Similarity=0.800 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 35899999999720888889984332040132156039969999996589885178999999999970998661699999 Q gi|254781063|r 29 LERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSIT 108 (129) Q Consensus 29 ~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~ 108 (129) ....+++|+++|++|+|||+|+||++||+||++.++++|.|.|.|+||+++||+.+.|.++|+++|++++|+.+|+|+++ T Consensus 4 ~~~t~~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~dg~V~v~i~l~~~~~~~~~~l~~~i~~~l~~l~gv~~v~V~~~ 83 (88) T 1uwd_A 4 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (88) T ss_dssp SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC T ss_pred CCCCHHHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 52789999999856889999937144360445665145653688863789996289999999999973899750899999 Q ss_pred ECCCC Q ss_conf 77889 Q gi|254781063|r 109 FDPPW 113 (129) Q Consensus 109 ~~p~W 113 (129) |+||| T Consensus 84 ~~~pw 88 (88) T 1uwd_A 84 FDPPW 88 (88) T ss_dssp CSSCC T ss_pred ECCCC T ss_conf 63999 No 4 >>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:) Probab=87.39 E-value=0.65 Score=26.11 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=55.8 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHH-HHHHHHHHHH-CCCCC Q ss_conf 788565358999999997208888899843320401321560399699999965898851789-9999999997-09986 Q gi|254781063|r 23 TIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGD-MPKWIENAVG-AVEGI 100 (129) Q Consensus 23 ~~~~~~~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~-i~~~i~~al~-~~~gv 100 (129) .....+...+.++|.++|..-+-|-+-. |=|=|.=+.++ +|.|.|.|.=.+.+||+... +..-|++.|+ .++.+ T Consensus 5 ~~~~~~~~~~~~~i~~~l~~~IrP~l~~---dGGdi~lv~v~-~g~v~v~l~GaC~gCp~s~~Tl~~~Ie~~L~~~~p~v 80 (92) T 1veh_A 5 SSGSEEDDEVVAMIKELLDTRIRPTVQE---DGGDVIYRGFE-DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEV 80 (92) T ss_dssp CSSCSSCCHHHHHHHHHHHHTTHHHHHH---HSCCCCEEEEE-TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSC T ss_pred CCCCCCCHHHHHHHHHHHHHHCCHHHHH---CCCCEEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 7788762899999999999841767896---69976999960-8878998278789984089999999999999978986 Q ss_pred CEEE Q ss_conf 6169 Q gi|254781063|r 101 SGVE 104 (129) Q Consensus 101 ~~V~ 104 (129) ..|. T Consensus 81 ~~V~ 84 (92) T 1veh_A 81 EGVE 84 (92) T ss_dssp CCEE T ss_pred CEEE T ss_conf 6598 No 5 >>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structure initiative, NESG, PSI; NMR {Staphylococcus epidermidis atcc 12228} (A:) Probab=83.30 E-value=3.6 Score=21.64 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHC-CCCCCEEEEEE Q ss_conf 5899999999720888889984332040132156039969999996589885178999-999999970-99866169999 Q gi|254781063|r 30 ERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMP-KWIENAVGA-VEGISGVEVSI 107 (129) Q Consensus 30 ~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~-~~i~~al~~-~~gv~~V~V~~ 107 (129) ..+.++|.++|..|. |-+- -|=|=|.=+.++ +|.|.|.|+=.+.+||+...=. ..|++.|+. ++++..| +.+ T Consensus 6 ~~~~~~I~~~Le~IR-P~L~---~dGGdv~lv~v~-~g~v~Vrl~GaC~gC~~s~~Tl~~~Ie~~L~~~ip~~~~V-~~v 79 (88) T 1xhj_A 6 PTMFDQVAEVIERLR-PFLL---RDGGDCTLVDVE-DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEV-EQV 79 (88) T ss_dssp SCHHHHHHHHHHHHH-HHHH---HHSCEEEEEECC-SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEE-EEE T ss_pred HHHHHHHHHHHHHHH-HHHH---HCCCCEEEEECC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-EEE T ss_conf 889999999999866-8999---679967998667-9999999647888980189999999999999878997779-997 Q ss_pred EECCCC Q ss_conf 977889 Q gi|254781063|r 108 TFDPPW 113 (129) Q Consensus 108 ~~~p~W 113 (129) .....| T Consensus 80 ~~~~~~ 85 (88) T 1xhj_A 80 FLEHHH 85 (88) T ss_dssp ECCCCC T ss_pred ECCCCC T ss_conf 531133 No 6 >>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:1-81) Probab=78.55 E-value=3.7 Score=21.61 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=36.4 Q ss_pred EECCEEEEEEECCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHC-CCCCCEEE Q ss_conf 2040132156039969999996589885178999-999999970-99866169 Q gi|254781063|r 54 ELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMP-KWIENAVGA-VEGISGVE 104 (129) Q Consensus 54 dLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~-~~i~~al~~-~~gv~~V~ 104 (129) |=|=|.=+.++ +|.|.|.|+=.+.+||+...=. .-|+..|+. ++++..|. T Consensus 23 dGGdi~lv~v~-~g~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~p~~~~V~ 74 (81) T 2z51_A 23 DGGNVALHEID-GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVE 74 (81) T ss_dssp TTEEEEEEEEE-TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEE T ss_pred CCCEEEEEEEC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 59847999801-99899998268789943799999999999999987531110 No 7 >>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154) Probab=66.84 E-value=7.1 Score=19.89 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHH-HHHHHHHHHHHHCCCCCCEE Q ss_conf 89999999972088888998433204013215603996999999658988517-89999999999709986616 Q gi|254781063|r 31 RISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVA-GDMPKWIENAVGAVEGISGV 103 (129) Q Consensus 31 ~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~-~~i~~~i~~al~~~~gv~~V 103 (129) .+.++|.++|..|. |.+-.|= -|=|.=+.++ +|.|.|.|.=.+.+||.. ..|...++..+ +.+..| T Consensus 4 ~~~~~I~~~L~~iR-P~L~~Dg--gGdielv~v~-~~~V~v~l~GaC~gCpTl~~~Ie~~l~~~i---p~i~~V 70 (73) T 2z51_A 4 LNEENIEKVLEEIR-PYLIGTA--DGSLDLVEIE-DPIVKIRITGPAAGVMTVRVAVTQKLREKI---PSIAAV 70 (73) T ss_dssp SSHHHHHHHHHHHG-GGCCGGG--CCEEEEEEEE-TTEEEEEEESGGGGCHHHHHHHHHHHHHHC---TTCCEE T ss_pred CHHHHHHHHHHCCC-CCCCCCC--CCEEEEEEEE-CCEEEEEECCCCCCCCCHHHHHHHHHHHHC---CCCCEE T ss_conf 00245566543035-8877788--8539999996-998999965886677539999999999869---996189 No 8 >>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} (A:) Probab=61.14 E-value=9.1 Score=19.23 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=25.1 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 999996589885178999999999970998661699999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSIT 108 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~ 108 (129) ++.+.+.-..|+.. ...|+++|..++||.+++|++. T Consensus 4 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~ 39 (73) T 1mwy_A 4 RYSWKVSGMDCAAC---ARKVENAVRQLAGVNQVQVLFA 39 (73) T ss_dssp EEEEEEESCCSTTH---HHHHHHHHHTSSSEEEEEEETT T ss_pred EEEEEECCCCHHHH---HHHHHHHHHCCCCCEEEEEECC T ss_conf 89999899883889---9999999865999479999898 No 9 >>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} (A:) Probab=60.68 E-value=11 Score=18.85 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=25.3 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 999999658988517899999999997099866169999 Q gi|254781063|r 69 VKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 69 V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) -++.+.+.--.|+... .-|++++..++||.+++|++ T Consensus 6 ~~~~l~V~gm~C~~C~---~~ie~~l~~~~GV~~v~v~~ 41 (76) T 1opz_A 6 KEIAMQVSGMTCAACA---ARIEKGLKRMPGVTDANVNL 41 (76) T ss_dssp EEEEEEEESCCSTTHH---HHHHHHHHTSTTEEEEEEEG T ss_pred EEEEEEECCCCCHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 7999999993438999---99999997499957999987 No 10 >>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} (A:1-73) Probab=54.57 E-value=8.3 Score=19.46 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=25.4 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 6999999658988517899999999997099866169999 Q gi|254781063|r 68 MVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 68 ~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) .+.+.+-+++.+| ...|+++|.+++||.++.|++ T Consensus 7 ~~~l~vgm~C~~C------~~~Ie~~l~~~~GV~~v~V~~ 40 (73) T 1qup_A 7 EATYAIPXHCENC------VNDIKACLKNVPGINSLNFDI 40 (73) T ss_dssp EEEEECCCCSTTH------HHHHHHHHTTCTTEEEEEEET T ss_pred EEEEEEEEECHHH------HHHHHHHHHCCCCEEEEEEEC T ss_conf 9999990582899------999999986699906999987 No 11 >>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:) Probab=53.02 E-value=8.1 Score=19.55 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEEEECCCCCCHH-HHHHHHHHHHHHCCCCC Q ss_conf 89999999972088888998433204013215603996999999658988517-89999999999709986 Q gi|254781063|r 31 RISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVA-GDMPKWIENAVGAVEGI 100 (129) Q Consensus 31 ~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~-~~i~~~i~~al~~~~gv 100 (129) .+.++|.++|..+.-|=+.. |=|=|.=+.++ +|.|.|.|.=.+.+||.. ..|...++..+-.+..| T Consensus 4 ~~~~~I~~~L~~irp~l~~~---dGGdielv~v~-~~~V~V~l~GaC~gCpTl~~~Ie~~L~~~ipei~~V 70 (74) T 1th5_A 4 LNEENVEKVLNEIRPYLAGT---GGGGLQFLMIK-GPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIV 70 (74) T ss_dssp CSHHHHHHHHTTTHHHHTTT---TCCCCCCCEEE-TTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEE T ss_pred CCHHHHHHHHHHHCHHHHHC---CCCEEEEEEEC-CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 68999999999856304026---89719999952-999999955887654059999999999879984089 No 12 >>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} (B:1-76) Probab=47.16 E-value=13 Score=18.34 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=24.7 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 6999999658988517899999999997099866169999 Q gi|254781063|r 68 MVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 68 ~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) .+.+.+-+++.+| ...|+++|.+++||.++.|++ T Consensus 8 ~~~~~vgm~C~~C------~~~Ie~~l~~~~GV~~v~v~~ 41 (76) T 1jk9_B 8 EATYAIPMHCENC------VNDIKACLKNVPGINSLNFDI 41 (76) T ss_dssp EEEEECCCCSSSH------HHHHHHHHTTCTTEEEEEEET T ss_pred EEEEEECEECHHH------HHHHHHHHHCCCCCEEEEEEC T ss_conf 8999986096899------999999986599916999988 No 13 >>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, metal transport; NMR {Helicobacter pylori 26695} (A:) Probab=46.21 E-value=21 Score=17.09 Aligned_cols=51 Identities=35% Similarity=0.528 Sum_probs=34.9 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCCCCCCCCCHHHH Q ss_conf 9999965898851789999999999709986616999-------99778898330698999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQ 123 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~W~~~~is~~~r 123 (129) ++.+......|... ...|++++++++||.+++|+ +.|++.=+++.+-+.-+ T Consensus 2 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~gV~~v~v~l~~~~v~V~~~~~~~~~~i~~~I~ 59 (66) T 1yg0_A 2 KATFQVPSITCNHC---VDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL 59 (66) T ss_dssp EEEECCTTCSCSHH---HHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHH T ss_pred EEEEEECCCCCHHH---HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHH T ss_conf 79999899175899---99999999718994699998889999999999999999999999 No 14 >>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} (A:1-72) Probab=45.97 E-value=23 Score=16.81 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=28.9 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 6999999658988517899999999997099866169999 Q gi|254781063|r 68 MVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 68 ~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) .-++.+.+.-..|+... ..|++++.+++||.+++|++ T Consensus 5 ~~~~~l~V~gm~C~~C~---~~ie~~l~~~~GV~~v~v~~ 41 (72) T 1p6t_A 5 QKEIAMQVSGMTCAACA---ARIEKGLKRMPGVTDANVNL 41 (72) T ss_dssp CEEEEEEEESCCSSHHH---HHHHHHHTTSSSEEEEEEEG T ss_pred CEEEEEEECCCCCHHHH---HHHHHHHHCCCCEEEEEEEC T ss_conf 60899998995768999---99999986599938999991 No 15 >>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} (A:) Probab=43.20 E-value=23 Score=16.76 Aligned_cols=49 Identities=24% Similarity=0.428 Sum_probs=31.5 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCC-CCCCCC Q ss_conf 9699999965898851789999999999709986616999-------997788-983306 Q gi|254781063|r 67 YMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPP-WTPDLM 118 (129) Q Consensus 67 g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~-W~~~~i 118 (129) +..++.+......|+... ..|+.+|..++||.+++|+ +.|+|. ++++.+ T Consensus 7 ~~~~~~l~V~gm~C~~C~---~~Ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~~i 63 (84) T 1q8l_A 7 GEVVLKMKVEGMTCHSCT---STIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 63 (84) T ss_dssp SCEEEEEEECCTTTCSSC---HHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHH T ss_pred CCEEEEEEECCEECHHHH---HHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHH T ss_conf 867999997992868999---999999865799569999988998999866886899999 No 16 >>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} (A:) Probab=43.04 E-value=26 Score=16.54 Aligned_cols=47 Identities=19% Similarity=0.481 Sum_probs=30.2 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCC-CCCCCCC Q ss_conf 9999965898851789999999999709986616999-------997788-9833069 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPP-WTPDLMS 119 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~-W~~~~is 119 (129) ++.+...--.|+.. ...|+++|++++||.+++|+ ++|+|. .+++.+. T Consensus 4 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~ 58 (72) T 1aw0_A 4 ETVINIDGMTCNSC---VQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLR 58 (72) T ss_dssp EEEEEEECCCHHHH---HHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHH T ss_pred EEEEEECCCCCHHH---HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHH T ss_conf 99999999016889---99999987268996799998889999999999999999999 No 17 >>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} (A:73-151) Probab=42.89 E-value=25 Score=16.63 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=31.1 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCC-CCCCCCCHH Q ss_conf 9999965898851789999999999709986616999-------997788-983306989 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPP-WTPDLMSEE 121 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~-W~~~~is~~ 121 (129) ++.+...-..|+.. ...|+++|+.++||.+++|+ +.|+|. .+++.|.+. T Consensus 3 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~~~~v~V~~d~~~~~~~~i~~~ 59 (79) T 1p6t_A 3 KAEFDIEGMTCAAC---ANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEA 59 (79) T ss_dssp EEEEEESSCCSSSH---HHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHH T ss_pred EEEEEECCCCCHHH---HHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHH T ss_conf 45784068875789---9999987412798589999767988999988898999999999 No 18 >>1sb6_A Copper chaperone scatx1; structure, NEW metal binding motif, structural proteomics in europe, spine, structural genomics; NMR {Synechocystis SP} (A:) Probab=41.88 E-value=21 Score=17.05 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 9999658988517899999999997099866169999 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +.+......|+... ..|++++++++||.+++|++ T Consensus 3 ~~l~V~gM~C~~C~---~~I~~~l~~~~GV~~v~v~~ 36 (64) T 1sb6_A 3 IQLTVPTIACEACA---EAVTKAVQNEDAQATVQVDL 36 (64) T ss_dssp EEEECTTTTSSSCT---HHHHHHHHHHCTTCEEEEET T ss_pred EEEEECCCCCCCHH---HHHHHHHHCCCCEEEEECCC T ss_conf 99997994470258---99999996499937987146 No 19 >>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} (A:) Probab=40.75 E-value=28 Score=16.32 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=27.5 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 96999999658988517899999999997099866169999 Q gi|254781063|r 67 YMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 67 g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ..-++.+......|+... ..|+++|..++||.+++|++ T Consensus 6 ~~~~~~l~V~gm~C~~C~---~~I~~~l~~~~GV~~~~v~~ 43 (79) T 1kvi_A 6 GVNSVTISVEGMTCNSCV---WTIEQQIGKVNGVHHIKVSL 43 (79) T ss_dssp TCEEEEEEECCCCSTTTH---HHHHHHHHHSSSCCCEEEEG T ss_pred CCEEEEEEECCEECHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 835999998994648999---99999986089966999998 No 20 >>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} (X:) Probab=40.50 E-value=28 Score=16.30 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=30.6 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCC-CCCCCCCH Q ss_conf 9999965898851789999999999709986616999-------997788-98330698 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPP-WTPDLMSE 120 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~-W~~~~is~ 120 (129) ++.+......|+.. ...|+++|.+++||.++.|+ +.|++. .+++.+.+ T Consensus 3 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~~~v~~~~~~v~V~~~~~~~~~~~i~~ 58 (74) T 3dxs_X 3 KIQVGVTGMTCAAC---SNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKE 58 (74) T ss_dssp EEEEEEECCCSHHH---HHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHH T ss_pred EEEEEECCCCHHHH---HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHH T ss_conf 99999899764999---999999997299957999984499999999999899999999 No 21 >>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A (A:) Probab=40.13 E-value=28 Score=16.26 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=24.3 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 9999658988517899999999997099866169999 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +.+.+.--.|+.. ...|+++|.+++||.++.|++ T Consensus 5 ~~l~V~gm~C~~C---~~~v~~~l~~~~GV~~v~v~~ 38 (71) T 2aj0_A 5 TVYRVDGLSCTNC---AAKFERNVKEIEGVTEAIVNF 38 (71) T ss_dssp EEEEEESCCCHHH---HHHHHHHHHHSTTEEEEEECC T ss_pred EEEEECCCCCHHH---HHHHHHHHCCCCCCEEEEEEC T ss_conf 8999789706899---999999872379944999989 No 22 >>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A (B:) Probab=39.90 E-value=29 Score=16.24 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.1 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99999658988517899999999997099866169999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ++.+.+.-..|+... ..|+++|..++||.+++|++ T Consensus 3 ~~~l~V~gm~C~~C~---~~I~~~l~~~~GV~~v~v~~ 37 (75) T 3cjk_B 3 SVTISVEGMTCNSCV---WTIEQQIGKVNGVHHIKVSL 37 (75) T ss_dssp EEEEEECCCCSHHHH---HHHHHHHHTSTTEEEEEEET T ss_pred EEEEEECCEECHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 999998990018999---99999997499958999994 No 23 >>1cpz_A Protein (COPZ); copper chaperone, metal transport; NMR {Enterococcus hirae} (A:) Probab=38.74 E-value=30 Score=16.13 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=28.1 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEE---CCCCCCCCCCHH Q ss_conf 99965898851789999999999709986616999997---788983306989 Q gi|254781063|r 72 LMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITF---DPPWTPDLMSEE 121 (129) Q Consensus 72 ~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~~---~p~W~~~~is~~ 121 (129) .+.+.-..|+.. ...|+++++.++||.++.|++.- .-.|+++.++.+ T Consensus 3 ~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~ 52 (68) T 1cpz_A 3 EFSVKGMSCNHC---VARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQAT 52 (68) T ss_dssp EEEESCCCSSSH---HHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHH T ss_pred EEEECCEECHHH---HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHH T ss_conf 889898633899---99999887569993799998679999999899989999 No 24 >>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} (A:105-202) Probab=37.29 E-value=31 Score=15.99 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=30.4 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 996999999658988517899999999997099866169999 Q gi|254781063|r 66 DYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 66 ~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ...-.+.+...-..|+... ..|+.+|..++||.+++|++ T Consensus 15 ~~~~~~~l~V~gm~C~~C~---~~Ie~~l~~~~GV~~~~v~~ 53 (98) T 2rop_A 15 GTCSTTLIAIAGMTCASCV---HSIEGMISQLEGVQQISVSL 53 (98) T ss_dssp -CCEEEEEEESCCCSTHHH---HHHHHHGGGSSSEEEEEEET T ss_pred CCCEEEEEECCCCCCHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 7643899961687661366---88988875389945999989 No 25 >>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} (A:) Probab=36.86 E-value=32 Score=15.95 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=27.9 Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 96999999658988517899999999997099866169999 Q gi|254781063|r 67 YMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 67 g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +..++.+.+.-..|+... ..|+++|.+++||.+++|++ T Consensus 14 ~~~~~~l~V~gm~C~~C~---~~Ie~~l~~~~GV~~v~v~~ 51 (95) T 2kkh_A 14 KLQKSYFDVLGICCTSEV---PIIENILKSLDGVKEYSVIV 51 (95) T ss_dssp CSEEEEEEETTCCTTTTH---HHHHHHHHHSSSEEEEEEET T ss_pred CEEEEEEEECCCCCHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 148999998980668899---99999997499805999876 No 26 >>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} (A:77-149) Probab=36.42 E-value=32 Score=15.91 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=30.9 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-------EEECCC-CCCCCCCH Q ss_conf 9999965898851789999999999709986616999-------997788-98330698 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVS-------ITFDPP-WTPDLMSE 120 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~-------~~~~p~-W~~~~is~ 120 (129) ++.+...-..|+... ..|+++|++++||.+++|+ ++|+|. ++++.|.. T Consensus 5 ~~~l~V~gm~C~~C~---~~ie~~l~~l~GV~~v~vn~~~~~~~v~~~~~~~~~~~i~~ 60 (73) T 2ew9_A 5 NIELTITGMTCASCV---HNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIK 60 (73) T ss_dssp EEEEEEESCCSHHHH---HHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHH T ss_pred EEEEECCCCCCCHHH---HHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHH T ss_conf 787623788713126---89999996799908998216788899998899999999999 No 27 >>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} (A:1-76) Probab=36.25 E-value=33 Score=15.89 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=24.6 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99999658988517899999999997099866169999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ++.+.+.-..|+... ..|+++|+.++||.+|.|++ T Consensus 5 ~~~l~v~gm~C~~C~---~~Ie~al~~~~GV~~v~v~~ 39 (76) T 2ew9_A 5 KCFLQIKGMTCASCV---SNIERNLQKEAGVLSVLVAL 39 (76) T ss_dssp EEEEEEECCCSSSHH---HHHHHHHHTTSSCCCEEEET T ss_pred EEEEEECCCCCHHHH---HHHHHHHHCCCCHHHHEEHH T ss_conf 999998997578899---99999996399846530002 No 28 >>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A (A:) Probab=35.56 E-value=34 Score=15.83 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=31.5 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-------EEEECCC-CCCCCCCH Q ss_conf 999996589885178999999999970998661699-------9997788-98330698 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEV-------SITFDPP-WTPDLMSE 120 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V-------~~~~~p~-W~~~~is~ 120 (129) ++.+...-..|+.. ...|+++|.+++||.++.| .++|+|. .+++.|-+ T Consensus 4 ~~~l~V~Gm~C~~C---~~~Ie~~l~~~~gV~~v~vn~~~~~~~v~~d~~~~~~~~i~~ 59 (90) T 2g9o_A 4 TATFIIDGMHCKSC---VSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRK 59 (90) T ss_dssp EEEEEEESCCHHHH---HHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHH T ss_pred EEEEEECCCCCHHH---HHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHH T ss_conf 69999899204787---999999975478703999999899999998898899999999 No 29 >>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} (A:) Probab=34.89 E-value=27 Score=16.40 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=34.3 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-------EEEECCCCCCCCCCHHH Q ss_conf 999996589885178999999999970998661699-------99977889833069899 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEV-------SITFDPPWTPDLMSEEA 122 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V-------~~~~~p~W~~~~is~~~ 122 (129) ++.+......|+... ..|+++|+.++||.+++| .+.|++.=+++.+.... T Consensus 3 ~~~l~V~gm~C~~C~---~~Ie~~l~~~~GV~~v~v~~~~~~~~v~~d~~~~~~~i~~~i 59 (72) T 1fvq_A 3 EVILAVHGMTCSACT---NTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEII 59 (72) T ss_dssp EEEEEECSCCSHHHH---HHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHH T ss_pred EEEEEECCCCCHHHH---HHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHH T ss_conf 999997996158999---999999975999469999888999999999999999999999 No 30 >>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A (A:) Probab=33.30 E-value=24 Score=16.67 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=22.4 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99658988517899999999997099866169999 Q gi|254781063|r 73 MTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 73 l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +...-..|... ...|+++|+.++||.+++|++ T Consensus 4 l~V~gm~C~~C---~~~ie~~l~~~~gV~~v~v~~ 35 (66) T 2roe_A 4 LKVEGMTCNHC---VMAVTKALKKVPGVEKVEVSL 35 (66) T ss_dssp EEEECCCSHHH---HHHHHHHHHTSTTCCCEEECS T ss_pred EEECCCCCHHH---HHHHHHHHHCCCCEEEEEEEC T ss_conf 99799081898---999999986599928999986 No 31 >>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination; 1.02A {Saccharomyces cerevisiae} (A:) Probab=33.05 E-value=26 Score=16.45 Aligned_cols=34 Identities=15% Similarity=0.427 Sum_probs=23.5 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEEE Q ss_conf 699999965898851789999999999709-9866169999 Q gi|254781063|r 68 MVKILMTLTAPGCPVAGDMPKWIENAVGAV-EGISGVEVSI 107 (129) Q Consensus 68 ~V~V~l~lT~~~CP~~~~i~~~i~~al~~~-~gv~~V~V~~ 107 (129) .+.+..-+++.+| ...|+++|.++ +||.+|+|++ T Consensus 6 ~~~~~vgM~C~~C------~~~Ie~al~~l~~GV~~v~v~l 40 (73) T 1cc8_A 6 HYQFNVVMTCSGC------SGAVNKVLTKLEPDVSKIDISL 40 (73) T ss_dssp EEEEEECCCSHHH------HHHHHHHHHTTTTSEEEEEEET T ss_pred EEEEEECCCCHHH------HHHHHHHHHCCCCCEEEEEEEC T ss_conf 9999983093898------9999999964767338999988 No 32 >>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} (A:) Probab=32.95 E-value=37 Score=15.57 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=24.8 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99999658988517899999999997099866169999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ++.+...-..|+.. ...|+++|+.++||.+++|++ T Consensus 4 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~~~v~~ 38 (72) T 1osd_A 4 TVTLSVPGMTCSAC---PITVKKAISKVEGVSKVDVTF 38 (72) T ss_dssp EEEEECTTCCSTTH---HHHHHHHHHTSTTEEEEEEET T ss_pred EEEEEECCCCHHHH---HHHHHHHHHCCCCCEEEEEEC T ss_conf 89999899710899---999999997499968999986 No 33 >>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} (A:225-344) Probab=32.18 E-value=38 Score=15.49 Aligned_cols=85 Identities=7% Similarity=0.009 Sum_probs=51.6 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEC--CCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC--EEEEE Q ss_conf 89999999972088888998433204013215603--996999999658988517899999999997099866--16999 Q gi|254781063|r 31 RISNDIIAALKTVYDPEIPCDIFELGLIYKIDVEN--DYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGIS--GVEVS 106 (129) Q Consensus 31 ~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~--~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~--~V~V~ 106 (129) .-.-++..+|+...+++.+...+..|++..-.-.+ -+.+.+.+.+=+.---..+.+.+.+++.++++.--. .++++ T Consensus 31 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~g~~~NvIp~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~ei~ 110 (120) T 3io1_A 31 LAAAQAALGLHAIPPHSAGASRVNVGVXQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGAAAXYEARYELR 110 (120) T ss_dssp HHHHHHHHHHHTCCCBTTBCEEEEEEEEEECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 77888765430012345532278999852543103067504899985477778887899987666554300123431689 Q ss_pred EE-ECCCCCC Q ss_conf 99-7788983 Q gi|254781063|r 107 IT-FDPPWTP 115 (129) Q Consensus 107 ~~-~~p~W~~ 115 (129) .. ..|||.| T Consensus 111 ~~~~~p~~~P 120 (120) T 3io1_A 111 XXGAATASAP 120 (120) T ss_dssp EEEEECCCCC T ss_pred EEECCCCCCC T ss_conf 8402567789 No 34 >>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} (A:) Probab=32.10 E-value=38 Score=15.49 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=24.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 9999658988517899999999997099866169999 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +.+...-..|+.. ...|+++|..++||.+++|++ T Consensus 4 ~~l~V~gm~C~~C---~~~ie~~l~~~~GV~~v~v~~ 37 (69) T 2qif_A 4 KTLQVEGMSCQHC---VKAVETSVGELDGVSAVHVNL 37 (69) T ss_dssp EEEEEECCCSHHH---HHHHHHHHHTSTTEEEEEEET T ss_pred EEEEECCCCCHHH---HHHHHHHHHCCCCCEEEEEEC T ss_conf 9999999236899---999999997199947999988 No 35 >>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:221-508) Probab=31.20 E-value=40 Score=15.39 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=31.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC Q ss_conf 9999658988517899999999997099866169999977889 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPW 113 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~~~p~W 113 (129) -.=.||-||-|.+..+-.++++-+.+...-....|+.-|+.-| T Consensus 242 WldvLtlPGTp~a~~FyrEiEqwm~~ny~g~~AtvRpEWSKGW 284 (288) T 2i0k_A 242 WLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDATFRPEWSKGW 284 (288) T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHHHSBSSSEEEECCTTSCC T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC T ss_conf 8740466673669999999999999972885456575210004 No 36 >>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A (A:) Probab=30.01 E-value=41 Score=15.27 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 9999658988517899999999997099866169999 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +.+...--.|+... ..|+++++.++||.+++|++ T Consensus 6 ~~~~V~gm~C~~C~---~~ie~~l~~~~GV~~v~v~~ 39 (75) T 1yjr_A 6 LELVVRGMTCASCV---HKIESSLTKHRGILYCSVAL 39 (75) T ss_dssp EEEEEETCCTTTHH---HHHHHHHTTSTTEEEEEEET T ss_pred EEEEECCCCCHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 99998990158999---99999985289956999987 No 37 >>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} (A:1-104) Probab=29.88 E-value=33 Score=15.85 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=26.8 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 996999999658988517899999999997099866169999 Q gi|254781063|r 66 DYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 66 ~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) .+..++.+.+.-..|+... ..|+++|.+++||.++.|++ T Consensus 17 ~~~~~~~l~V~Gm~C~~C~---~~ie~~l~~~~gV~~v~v~~ 55 (104) T 2rop_A 17 SHVVTLQLRIDGMHCKSCV---LNIEENIGQLLGVQSIQVSL 55 (104) T ss_dssp ---CEEEEEEESGGGSTHH---HHHHHHTTSBTTEEEEEEET T ss_pred CCEEEEEEEECCEECHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 8528999998990258999---99999974599907999975 No 38 >>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:217-494) Probab=29.86 E-value=42 Score=15.26 Aligned_cols=44 Identities=30% Similarity=0.287 Sum_probs=32.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC Q ss_conf 99996589885178999999999970998661699999778898 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWT 114 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~~~p~W~ 114 (129) -.=.||-||-|.+..+-.++++-+.+...-....|+.-|+.-|. T Consensus 224 WldiLtlPGTp~a~~FyrEiEqwm~~ny~g~yAtvRpEWSKGWa 267 (278) T 3js8_A 224 WLDILTLPGTPYANQFYREIEQWIEANFNGSYAAVRPEWSKGWG 267 (278) T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHHHSCTTTEEEEECTTSBCS T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 78864147783169999999999998742343566530022344 No 39 >>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=29.62 E-value=23 Score=16.84 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=23.2 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 999999658988517899999999997099866169999 Q gi|254781063|r 69 VKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 69 V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) +.+.+-+++.+| ...|+++|..++||.+|+|++ T Consensus 21 ~~l~vgM~C~~C------~~~Ie~~l~~~~GV~~v~v~~ 53 (98) T 2crl_A 21 LEFAVQMTCQSC------VDAVRKSLQGVAGVQDVEVHL 53 (98) T ss_dssp EEEEECCCSHHH------HHHHHHTTTTCTTCCEEEEET T ss_pred EEEEECCCCHHH------HHHHHHHHHCCCCCEEEEEEC T ss_conf 999983298899------999999996689923899988 No 40 >>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} (A:195-308) Probab=29.09 E-value=43 Score=15.18 Aligned_cols=85 Identities=9% Similarity=0.209 Sum_probs=53.8 Q ss_pred CCCCHHHHH--HHHHHHHHCCCCCCCC---CCEEEECCEEEEEEECCCEE--EEEEEECCCCCCHHHHHHHHHHHHHHCC Q ss_conf 856535899--9999997208888899---84332040132156039969--9999965898851789999999999709 Q gi|254781063|r 25 PPEDLERIS--NDIIAALKTVYDPEIP---CDIFELGLIYKIDVENDYMV--KILMTLTAPGCPVAGDMPKWIENAVGAV 97 (129) Q Consensus 25 ~~~~~~~l~--~~V~eaL~~V~DPEl~---v~IvdLGlV~~i~i~~~g~V--~V~l~lT~~~CP~~~~i~~~i~~al~~~ 97 (129) |....+++. -+++.+|+.+.+.+.. -.++.+|.+..=.- .+.| .+.++......|-.+.+.+.+++.+..+ T Consensus 20 p~~g~nai~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~i~gg~~--~NvIP~~~~~~~d~R~~~~~~~i~~~i~~~~~~~ 97 (114) T 1xmb_A 20 PQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNA--FNVIPDSITIGGTLRAFTGFTQLQQRVKEVITKQ 97 (114) T ss_dssp ---CCHHHHHHHHHHHHHHTTCBCCSSGGGCEEEEEEEEC----------CCEEEEEEEEEESSCHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCC--CCCCCCHHEEEEEEEECCHHHHHHHHHHHHHHHH T ss_conf 86578838899999999865033467987537999999727875--5227622045544101014667789999988899 Q ss_pred CCCCEEEEEEEECC Q ss_conf 98661699999778 Q gi|254781063|r 98 EGISGVEVSITFDP 111 (129) Q Consensus 98 ~gv~~V~V~~~~~p 111 (129) .--..+.+++.|.+ T Consensus 98 a~~~g~~~~i~~~~ 111 (114) T 1xmb_A 98 AAVHRCNASVNLTP 111 (114) T ss_dssp HHHTTEEEEEESSG T ss_pred HHHHCCCCCEEECC T ss_conf 99845665101013 No 41 >>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} (A:) Probab=28.40 E-value=33 Score=15.84 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=24.3 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99999658988517899999999997099866169999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ++.+.+.--.|+.. ...|+++++.++||.+++|++ T Consensus 4 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~~~v~~ 38 (80) T 1jww_A 4 KAEFDIEGMTCAAC---ANRIEKRLNKIEGVANAPVNF 38 (80) T ss_dssp EEEEEEESCCCHHH---HHHHHHHHHTSTTEEECCCCS T ss_pred EEEEEECCCCHHHH---HHHHHHHHHCCCCCEEEEEEC T ss_conf 89999899763888---999999996399947999987 No 42 >>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:) Probab=27.36 E-value=31 Score=16.01 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=26.8 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 6999999658988517899999999997099866169999 Q gi|254781063|r 68 MVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 68 ~V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) .-.+.+...-..|.... ..|+.+|+.++||.+++|++ T Consensus 21 ~~~~~l~V~gm~C~~C~---~~Ie~~l~~~~GV~~v~v~~ 57 (85) T 2k2p_A 21 GAGLSFHVEDMTCGHCA---GVIKGAIEKTVPGAAVHADP 57 (85) T ss_dssp -CEEEEECTTCCHHHHH---HHHHHHHHHHSTTCEEEEET T ss_pred CCEEEEEECCCCCHHHH---HHHHHHHHCCCCCEEEEEEC T ss_conf 88699997990968999---99999997499924999877 No 43 >>2gcf_A Cation-transporting ATPase PACS; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, structural genomics, structural proteomics in europe; NMR {Synechocystis SP} (A:) Probab=24.77 E-value=52 Score=14.70 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=31.9 Q ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-------EEEECCCCCCCCCCHHHH Q ss_conf 6589885178999999999970998661699-------999778898330698999 Q gi|254781063|r 75 LTAPGCPVAGDMPKWIENAVGAVEGISGVEV-------SITFDPPWTPDLMSEEAQ 123 (129) Q Consensus 75 lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V-------~~~~~p~W~~~~is~~~r 123 (129) +++++|- .-|+++|+.++||.++.| .+.|++..+++.+...-+ T Consensus 12 m~C~~C~------~~Ie~~l~~~~gV~~v~v~~~~~~v~v~~~~~~~~~~i~~~i~ 61 (73) T 2gcf_A 12 MRCAACA------SSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 61 (73) T ss_dssp CCSSTTT------HHHHHHHTTSTTEEEEEECTTTCEEEEEECSSSCCTHHHHHHH T ss_pred CCCHHHH------HHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHH T ss_conf 3458999------9999998638994799998889999999999999999999999 No 44 >>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A (A:) Probab=23.91 E-value=35 Score=15.71 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=23.9 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 99999658988517899999999997099866169999 Q gi|254781063|r 70 KILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSI 107 (129) Q Consensus 70 ~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~ 107 (129) ++.+...-..|+... ..|+++|..++||.+++|++ T Consensus 4 ~~~~~V~gm~C~~C~---~~Ie~~l~~~~GV~~v~v~~ 38 (77) T 1y3j_A 4 KCYIQVTGMTCASCV---ANIERNLRREEGIYSILVAL 38 (77) T ss_dssp EEEEEESCGGGCSHH---HHHHHHHTTSSSEEECCCBT T ss_pred EEEEEECCCCCHHHH---HHHHHHHHHCCCCEEEEEEC T ss_conf 699998991068999---99999997289947999988 No 45 >>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A* (A:53-126) Probab=23.77 E-value=42 Score=15.23 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=34.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEEEE Q ss_conf 999999997208888899843320401321560399699999 Q gi|254781063|r 32 ISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILM 73 (129) Q Consensus 32 l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V~l 73 (129) ..+.|...++.+.+|.-+-....++.|.+|++.++..+.|.+ T Consensus 30 ta~Dv~~s~~~~~~~~~~~~~~~~~~i~~i~~~d~~tv~i~l 71 (74) T 1zu0_A 30 TADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRL 71 (74) T ss_dssp CHHHHHHHHHHHHHCGGGCSSCHHHHEEEEEEEETTEEEEEE T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCCEEEE T ss_conf 599999999998618875612343214389991598418996 No 46 >>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:85-189) Probab=22.59 E-value=56 Score=14.46 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=32.1 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCCEEEE Q ss_conf 898877885653589999999972088888998433204013215603996999 Q gi|254781063|r 18 LSPESTIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKI 71 (129) Q Consensus 18 ~~~~~~~~~~~~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g~V~V 71 (129) +.++++....+...+.++|+.+|+.. -.||||+-+-- +.+...| T Consensus 53 vn~Rs~gsdlDk~kl~EkvrtsLrRL---------rrLGmi~~~g~-d~~kfri 96 (105) T 3euh_C 53 VNNRSTGSDVDRQKLQEKVRSSLNRL---------RRLGMVWFMGH-DSSKFRI 96 (105) T ss_dssp HSSSCSSCHHHHHHHHHHHHHHHHHH---------HHTTSEEECSS-SSSEEEE T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHH---------HHCCCEEEECC-CCCEEEE T ss_conf 35667754230999999999999999---------86554233237-6662775 No 47 >>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:149-217,A:369-404) Probab=21.87 E-value=49 Score=14.85 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=48.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCC----EE----EEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 7788565358999999997208888899843320401321560399----69----999996589885178999999999 Q gi|254781063|r 22 STIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDY----MV----KILMTLTAPGCPVAGDMPKWIENA 93 (129) Q Consensus 22 ~~~~~~~~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g----~V----~V~l~lT~~~CP~~~~i~~~i~~a 93 (129) +.......+.+.+-+.+|...|.+.+-+..-+|+-+|+=.++-++. .+ .+++.|--+.--..+.+.+.++.+ T Consensus 16 SK~~~~~~d~la~lvvdAv~~v~~~~~~~~~vDl~~I~I~K~~Ggs~~dS~lV~~ka~TiilRG~~~~~ldE~eRsi~Da 95 (105) T 1q3q_A 16 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRPKAVTILIRGGTEHVIDEVERALEDA 95 (105) T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESCSSEEEEEEESSHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 22115589999999999975113456774022022059984378750100442388489998999778899999999999 Q ss_pred HHC Q ss_conf 970 Q gi|254781063|r 94 VGA 96 (129) Q Consensus 94 l~~ 96 (129) |.. T Consensus 96 l~v 98 (105) T 1q3q_A 96 VKV 98 (105) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 48 >>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A (A:) Probab=21.49 E-value=37 Score=15.55 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=17.3 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999658988517899999999997099866 Q gi|254781063|r 69 VKILMTLTAPGCPVAGDMPKWIENAVGAVEGIS 101 (129) Q Consensus 69 V~V~l~lT~~~CP~~~~i~~~i~~al~~~~gv~ 101 (129) +.+..-+++.+| ...|+++|+.++||. T Consensus 4 ~~l~vgM~C~~C------~~~I~kal~~~~Gv~ 30 (68) T 3iwl_A 4 HEFSVDMTCGGC------AEAVSRVLNKLGGVK 30 (68) T ss_dssp EEEEECCCSHHH------HHHHHHHHHHHCSEE T ss_pred EEEEECCCCHHH------HHHHHHHHHCCCCEE T ss_conf 899954595799------999999873499869 No 49 >>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} (A:1-61,A:158-195) Probab=21.47 E-value=60 Score=14.31 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=30.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCC-CCCEEEEEEEEC Q ss_conf 999965898851789999999999-7099-866169999977 Q gi|254781063|r 71 ILMTLTAPGCPVAGDMPKWIENAV-GAVE-GISGVEVSITFD 110 (129) Q Consensus 71 V~l~lT~~~CP~~~~i~~~i~~al-~~~~-gv~~V~V~~~~~ 110 (129) +.+.+.+++||....|.-.+..++ +..+ ++.-++|++++. T Consensus 20 vVVeF~A~WC~pCk~m~P~i~e~v~~~~~d~V~f~kVdVd~~ 61 (99) T 3c7m_A 20 TLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETK 61 (99) T ss_dssp EEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECTTS T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 799998578852587878875666640666660589746777 No 50 >>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119) Probab=21.24 E-value=48 Score=14.89 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=36.7 Q ss_pred CEEEECCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCC Q ss_conf 43320401321560399699999965898851789999999999709 Q gi|254781063|r 51 DIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAV 97 (129) Q Consensus 51 ~IvdLGlV~~i~i~~~g~V~V~l~lT~~~CP~~~~i~~~i~~al~~~ 97 (129) ..+.-|+|+...-..|+. .+.+.||-.|+-+.+.+.....+....+ T Consensus 73 ~L~~~gli~r~~~~~D~R-~~~i~lT~~G~~~~~~~~~~~~~~~~~l 118 (119) T 3hsr_A 73 KLEKKDYVVRTREEKDER-NLQISLTEQGKAIKSPLAEISVKVFNEF 118 (119) T ss_dssp HHHHTTSEEEEC--------CEEEECHHHHHTHHHHHHHHHHHHHTS T ss_pred HHHHCCCEEEEECCCCCC-EEEEEECHHHHHHHHHHHHHHHHHHHHC T ss_conf 998179569854378987-5788889889999999999999999877 No 51 >>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:147-215,B:368-402) Probab=20.21 E-value=64 Score=14.15 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=45.4 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEECCC----EE---EEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 788565358999999997208888899843320401321560399----69---99999658988517899999999997 Q gi|254781063|r 23 TIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDY----MV---KILMTLTAPGCPVAGDMPKWIENAVG 95 (129) Q Consensus 23 ~~~~~~~~~l~~~V~eaL~~V~DPEl~v~IvdLGlV~~i~i~~~g----~V---~V~l~lT~~~CP~~~~i~~~i~~al~ 95 (129) .......+.+.+-+.+|...|.+.+=+..-+||-+|+=.++-+++ .+ .+++.|-- ..+.+.+++++++. T Consensus 17 K~~~~~~d~la~lvVdAv~~V~~~~~~~~~vDl~~I~I~K~~Ggs~~dS~LV~~a~ti~lRG----~~~~~ldE~eRsl~ 92 (104) T 1a6d_B 17 KSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRG----ETEHVVDEMERSIT 92 (104) T ss_dssp SGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEE----SSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEECEEECEEEEEEECC----CCHHHHHHHHHHHH T ss_conf 13566777777788887754200135552453040899997387022052433269999468----75668987763467 Done!