RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781063|ref|YP_003065476.1| hypothetical protein
CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>3lno_A Putative uncharacterized protein; alpha-beta fold, structural
           genomics, center for structural genomics of infectious
           diseases, csgid; 2.10A {Bacillus anthracis}
          Length = 108

 Score =  116 bits (292), Expect = 2e-27
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 30  ERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKW 89
           E   N + A L+ V DPE+  DI  LGL+Y +  + +    I MT+T+ GCP+AG +   
Sbjct: 7   EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSD 66

Query: 90  IENAVG-AVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127
           ++  +   V  ++ +EV++ ++PPW+ + MS  A+IA G
Sbjct: 67  VKKVLSTNVPEVNEIEVNVVWNPPWSKERMSRMAKIALG 105


>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function,
           contains PAAD domain, similar to PAAD protein, unknown
           activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB:
           1wcj_A
          Length = 103

 Score =  111 bits (280), Expect = 3e-26
 Identities = 44/102 (43%), Positives = 64/102 (62%)

Query: 26  PEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGD 85
           P   +    D++ ALK V D E+  D+  LGL+Y I +++   VK+LMT+T P CP+AG 
Sbjct: 1   PMSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGM 60

Query: 86  MPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127
           +    E A+  +EG++ VEV +TFDPPWTP+ MS E +   G
Sbjct: 61  ILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG 102


>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose
           reductase, plasmid, oxidoreductase, structural genomics,
           NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A
           3cq3_A*
          Length = 103

 Score =  112 bits (281), Expect = 3e-26
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 34  NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93
               A L+ VYDPE+  D+  LGLIY + VE      + MTLT PGCP+   + + +  A
Sbjct: 9   AQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAY-VRMTLTTPGCPLHDSLGEAVRQA 67

Query: 94  VGAVEGISGVEVSITFDPPWTPDLMSEEAQIATGY 128
           +  + G+  VEV +TF+PPWT   +SE+A+   G+
Sbjct: 68  LSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102


>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
           beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
           PDB: 1mwz_A
          Length = 73

 Score = 27.0 bits (60), Expect = 1.2
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           +ENAV  + G++ V+V        +  D      +  E A    GY
Sbjct: 21  VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQV--ESALQKAGY 64


>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
           metal-binding, oxidoreductase; NMR {Pseudomonas
           aeruginosa} PDB: 2kt3_A
          Length = 69

 Score = 26.4 bits (59), Expect = 2.0
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 7/34 (20%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPD 116
           ++ A+  V G+    VS       +   P  +PD
Sbjct: 18  VKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPD 51


>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
           {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
           2ggp_B
          Length = 72

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           I   + A++G++  ++S       +T+D   T D + +E     G+
Sbjct: 20  INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64


>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding
           protein, perisplasm, structural genomics; 2.00A
           {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
           1afj_A 2hqi_A
          Length = 72

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           ++ A+  VEG+S V+V+       +TFD   T      +A    GY
Sbjct: 21  VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66


>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
           S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus}
          Length = 302

 Score = 25.6 bits (55), Expect = 3.5
 Identities = 3/29 (10%), Positives = 8/29 (27%)

Query: 79  GCPVAGDMPKWIENAVGAVEGISGVEVSI 107
                 D+ K+    +  +        +I
Sbjct: 56  DFGNGADLEKYFYGEIALLVATDPDADAI 84


>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor,
           molybdopterin, peroxisomes, intramolecular electron
           transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis
           thaliana} SCOP: b.1.18.6 d.176.1.1
          Length = 393

 Score = 25.1 bits (54), Expect = 4.8
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 42  TVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGI 100
            ++ P +  D            + D+ V+  +        V  G +        G   GI
Sbjct: 242 KMFPPSVNWDNIN---WSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGI 298

Query: 101 SGVEVSITFDPPWTP 115
             V++S+     W  
Sbjct: 299 ERVDISLDGGKNWVE 313


>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding,
           trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
          Length = 71

 Score = 24.9 bits (55), Expect = 5.2
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 7/34 (20%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPD 116
           IE A+  V G+   +V+       +++    TP 
Sbjct: 21  IERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54


>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
           fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1
           PDB: 1oq3_A 1oq6_A
          Length = 76

 Score = 24.7 bits (54), Expect = 6.1
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           IE  +  + G++   V+       + +DP  T     +E     GY
Sbjct: 24  IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69


>1jww_A Potential copper-transporting ATPase;
           beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
           {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
          Length = 80

 Score = 24.7 bits (54), Expect = 6.8
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           IE  +  +EG++   V+       + ++P        +EA    GY
Sbjct: 21  IEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 66


>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
           MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB:
           2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
          Length = 372

 Score = 24.7 bits (53), Expect = 6.8
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 65  NDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGISGVEVSITFDPPWTP 115
            +  V+  +T   PG  V  G++        G    +  V+VS+     W  
Sbjct: 249 QELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKV 300


>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
           N-type ATP pyrophosphatase, transferase (glutamine
           amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli
           K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
          Length = 525

 Score = 24.5 bits (53), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)

Query: 24  IPPEDLERISNDIIAALKT----VYD 45
           +P + L R+SN II  +      VYD
Sbjct: 488 LPYDFLGRVSNRIINEVNGISRVVYD 513


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 7.5
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 7/35 (20%)

Query: 13  ADKIALSPES-TIP------PEDLERISNDIIAAL 40
            + ++ + +   IP        DL  +S  I   +
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479


>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
           phosphate, PLP, RV3290C, lysine amino transferase; HET:
           PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
           2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
          Length = 449

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 14  DKIALSPESTIPPEDLERISNDIIAALKTV 43
           D +   P  T+   +++     + +AL  V
Sbjct: 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 12/39 (30%)

Query: 27 EDLERISNDIIAALKTVY-DPEIPCDIFELGLIYKIDVE 64
          + L+++     A+LK +Y D   P       L  K  +E
Sbjct: 20 QALKKLQ----ASLK-LYADDSAP------ALAIKATME 47


>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium
          tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A*
          2ao2_A*
          Length = 166

 Score = 24.4 bits (53), Expect = 7.9
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 6  PDTENNIADKI-ALSPESTIPPEDLERISNDIIAALKTV 43
                   K+   +    I P+ + R+ +D I A + +
Sbjct: 37 SGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAI 75


>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
           homeostasis, chaperone, ION transport, metal- binding,
           alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
          Length = 75

 Score = 24.3 bits (53), Expect = 8.3
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           IE  +G V G+  ++VS       I +DP        +EA    G+
Sbjct: 20  IEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65


>1yg0_A COP associated protein; open-faced beta-sandwich, missing
           C-terminal beta-sheet, metal transport; NMR
           {Helicobacter pylori 26695}
          Length = 66

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 90  IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
           IE  VG +EG+S ++VS       + FD P T DL+ +EA +  G 
Sbjct: 19  IEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLI-KEALLDAGQ 63


>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
           ATP binding, purine nucleotide biosynthetic pathway;
           2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
          Length = 503

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 4/26 (15%)

Query: 24  IPPEDLERISNDIIAALKT----VYD 45
           +P E L+  +  I   +      VYD
Sbjct: 466 LPLEFLDEAARRITRRVPEIGRVVYD 491


>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
           beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
           {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
          Length = 222

 Score = 24.1 bits (52), Expect = 9.6
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 90  IENAVGAVEGISGVEVSIT 108
           I+  +  V GI+ +   I 
Sbjct: 23  IKACLKNVPGINSLNFDIE 41


>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
           complex, heterodimer, metallochaperone, amyotrophic
           lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
           SCOP: b.1.8.1 d.58.17.1
          Length = 249

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 90  IENAVGAVEGISGVEVSI 107
           I+  +  V GI+ +   I
Sbjct: 24  IKACLKNVPGINSLNFDI 41


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,241,002
Number of extensions: 56011
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 40
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)