RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781063|ref|YP_003065476.1| hypothetical protein CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62] (129 letters) >3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} Length = 108 Score = 116 bits (292), Expect = 2e-27 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%) Query: 30 ERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKW 89 E N + A L+ V DPE+ DI LGL+Y + + + I MT+T+ GCP+AG + Sbjct: 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSD 66 Query: 90 IENAVG-AVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127 ++ + V ++ +EV++ ++PPW+ + MS A+IA G Sbjct: 67 VKKVLSTNVPEVNEIEVNVVWNPPWSKERMSRMAKIALG 105 >1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A Length = 103 Score = 111 bits (280), Expect = 3e-26 Identities = 44/102 (43%), Positives = 64/102 (62%) Query: 26 PEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGD 85 P + D++ ALK V D E+ D+ LGL+Y I +++ VK+LMT+T P CP+AG Sbjct: 1 PMSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGM 60 Query: 86 MPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127 + E A+ +EG++ VEV +TFDPPWTP+ MS E + G Sbjct: 61 ILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG 102 >3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* Length = 103 Score = 112 bits (281), Expect = 3e-26 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93 A L+ VYDPE+ D+ LGLIY + VE + MTLT PGCP+ + + + A Sbjct: 9 AQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAY-VRMTLTTPGCPLHDSLGEAVRQA 67 Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEAQIATGY 128 + + G+ VEV +TF+PPWT +SE+A+ G+ Sbjct: 68 LSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102 >1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73 Score = 27.0 bits (60), Expect = 1.2 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 +ENAV + G++ V+V + D + E A GY Sbjct: 21 VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQV--ESALQKAGY 64 >2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69 Score = 26.4 bits (59), Expect = 2.0 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 7/34 (20%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPD 116 ++ A+ V G+ VS + P +PD Sbjct: 18 VKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPD 51 >1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Length = 72 Score = 25.5 bits (56), Expect = 3.3 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 I + A++G++ ++S +T+D T D + +E G+ Sbjct: 20 INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64 >1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72 Score = 25.5 bits (56), Expect = 3.5 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 ++ A+ VEG+S V+V+ +TFD T +A GY Sbjct: 21 VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus} Length = 302 Score = 25.6 bits (55), Expect = 3.5 Identities = 3/29 (10%), Positives = 8/29 (27%) Query: 79 GCPVAGDMPKWIENAVGAVEGISGVEVSI 107 D+ K+ + + +I Sbjct: 56 DFGNGADLEKYFYGEIALLVATDPDADAI 84 >1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393 Score = 25.1 bits (54), Expect = 4.8 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%) Query: 42 TVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGI 100 ++ P + D + D+ V+ + V G + G GI Sbjct: 242 KMFPPSVNWDNIN---WSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGI 298 Query: 101 SGVEVSITFDPPWTP 115 V++S+ W Sbjct: 299 ERVDISLDGGKNWVE 313 >2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71 Score = 24.9 bits (55), Expect = 5.2 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 7/34 (20%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPD 116 IE A+ V G+ +V+ +++ TP Sbjct: 21 IERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54 >1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Length = 76 Score = 24.7 bits (54), Expect = 6.1 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE + + G++ V+ + +DP T +E GY Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69 >1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Length = 80 Score = 24.7 bits (54), Expect = 6.8 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE + +EG++ V+ + ++P +EA GY Sbjct: 21 IEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 66 >2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372 Score = 24.7 bits (53), Expect = 6.8 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 65 NDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGISGVEVSITFDPPWTP 115 + V+ +T PG V G++ G + V+VS+ W Sbjct: 249 QELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKV 300 >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 Score = 24.5 bits (53), Expect = 7.0 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%) Query: 24 IPPEDLERISNDIIAALKT----VYD 45 +P + L R+SN II + VYD Sbjct: 488 LPYDFLGRVSNRIINEVNGISRVVYD 513 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 24.5 bits (53), Expect = 7.5 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 7/35 (20%) Query: 13 ADKIALSPES-TIP------PEDLERISNDIIAAL 40 + ++ + + IP DL +S I + Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479 >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 Score = 24.6 bits (52), Expect = 7.7 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 14 DKIALSPESTIPPEDLERISNDIIAALKTV 43 D + P T+ +++ + +AL V Sbjct: 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 24.6 bits (52), Expect = 7.9 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 12/39 (30%) Query: 27 EDLERISNDIIAALKTVY-DPEIPCDIFELGLIYKIDVE 64 + L+++ A+LK +Y D P L K +E Sbjct: 20 QALKKLQ----ASLK-LYADDSAP------ALAIKATME 47 >2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A* Length = 166 Score = 24.4 bits (53), Expect = 7.9 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 6 PDTENNIADKI-ALSPESTIPPEDLERISNDIIAALKTV 43 K+ + I P+ + R+ +D I A + + Sbjct: 37 SGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAI 75 >3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75 Score = 24.3 bits (53), Expect = 8.3 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE +G V G+ ++VS I +DP +EA G+ Sbjct: 20 IEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65 >1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, metal transport; NMR {Helicobacter pylori 26695} Length = 66 Score = 24.3 bits (53), Expect = 8.4 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE VG +EG+S ++VS + FD P T DL+ +EA + G Sbjct: 19 IEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLI-KEALLDAGQ 63 >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* Length = 503 Score = 24.2 bits (52), Expect = 8.6 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 4/26 (15%) Query: 24 IPPEDLERISNDIIAALKT----VYD 45 +P E L+ + I + VYD Sbjct: 466 LPLEFLDEAARRITRRVPEIGRVVYD 491 >1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Score = 24.1 bits (52), Expect = 9.6 Identities = 5/19 (26%), Positives = 9/19 (47%) Query: 90 IENAVGAVEGISGVEVSIT 108 I+ + V GI+ + I Sbjct: 23 IKACLKNVPGINSLNFDIE 41 >1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Score = 24.1 bits (52), Expect = 9.8 Identities = 5/18 (27%), Positives = 9/18 (50%) Query: 90 IENAVGAVEGISGVEVSI 107 I+ + V GI+ + I Sbjct: 24 IKACLKNVPGINSLNFDI 41 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.136 0.404 Gapped Lambda K H 0.267 0.0651 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,241,002 Number of extensions: 56011 Number of successful extensions: 189 Number of sequences better than 10.0: 1 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 40 Length of query: 129 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 47 Effective length of database: 3,705,222 Effective search space: 174145434 Effective search space used: 174145434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 51 (23.6 bits)