RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781063|ref|YP_003065476.1| hypothetical protein CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62] (129 letters) >d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Length = 102 Score = 111 bits (280), Expect = 1e-26 Identities = 43/94 (45%), Positives = 62/94 (65%) Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93 D++ ALK V D E+ D+ LGL+Y I +++ VK+LMT+T P CP+AG + E A Sbjct: 8 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEA 67 Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127 + +EG++ VEV +TFDPPWTP+ MS E + G Sbjct: 68 IKKIEGVNNVEVELTFDPPWTPERMSPELREKFG 101 >d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Length = 91 Score = 101 bits (253), Expect = 2e-23 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93 A L+ VYDPE+ D+ LGLIY + V + MTLT PGCP+ + + + A Sbjct: 4 AQAWALLEAVYDPELGLDVVNLGLIYDLVV-EPPRAYVRMTLTTPGCPLHDSLGEAVRQA 62 Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEA 122 + + G+ VEV +TF+PPWT +SE+A Sbjct: 63 LSRLPGVEEVEVEVTFEPPWTLARLSEKA 91 >d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Score = 25.1 bits (55), Expect = 1.9 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 I + A++G++ ++S +T+D T D + +E G+ Sbjct: 20 INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64 >d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73 Score = 25.2 bits (55), Expect = 2.0 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 +ENAV + G++ V+V + D + E A GY Sbjct: 21 VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQV--ESALQKAGY 64 >d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72 Score = 24.7 bits (54), Expect = 2.6 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 ++ A+ VEG+S V+V+ +TFD T +A GY Sbjct: 21 VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66 >d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132 Score = 24.1 bits (52), Expect = 4.1 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%) Query: 43 VYDPEIPCDIFELGLIYKIDVENDYMV------KILMTLTAPGCPVAGDMPKWI 90 Y E DI + + V++ + ++ PG G M + I Sbjct: 6 AYGGEFGPDIEFVAQYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERI 59 >d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72 Score = 23.9 bits (52), Expect = 4.2 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE + + G++ V+ + +DP T +E GY Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69 >d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165 Score = 23.7 bits (51), Expect = 5.5 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 6 PDTENNIADKI-ALSPESTIPPEDLERISNDIIAALKTV 43 K+ + I P+ + R+ +D I A + + Sbjct: 36 SGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAI 74 >d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]} Length = 121 Score = 23.6 bits (51), Expect = 6.3 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%) Query: 24 IPPEDLERISNDIIAALK----TVYD 45 +P + L R+SN II + VYD Sbjct: 84 LPYDFLGRVSNRIINEVNGISRVVYD 109 >d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Score = 23.3 bits (50), Expect = 6.5 Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 22 STIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKI------DVENDYMVKILMTL 75 S ++++ A+K+V + + I ++ +++ ++ +++ Sbjct: 18 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNI-QVVKKQGGAIDDTQLINKAVSI 76 Query: 76 TAPGCP--VAGDMPKWIENAVG 95 G V +M + I +++ Sbjct: 77 LVRGETEHVVDEMERSITDSLH 98 >d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68 Score = 23.2 bits (50), Expect = 7.1 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 IE AVG + G+ V+V + FD +A GY Sbjct: 18 IEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63 >d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69 Score = 23.2 bits (50), Expect = 7.2 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128 +E +VG ++G+S V V+ ++FD +A GY Sbjct: 20 VETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.136 0.404 Gapped Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 534,412 Number of extensions: 24182 Number of successful extensions: 82 Number of sequences better than 10.0: 1 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 21 Length of query: 129 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 53 Effective length of database: 1,364,116 Effective search space: 72298148 Effective search space used: 72298148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 48 (22.4 bits)