HHsearch alignment for GI: 254781064 and conserved domain: PRK11190
>PRK11190 putative DNA uptake protein; Provisional.
Probab=99.96 E-value=1.3e-28 Score=181.53 Aligned_cols=99 Identities=23% Similarity=0.355 Sum_probs=91.0
Q ss_pred CEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHH-HCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE
Q ss_conf 165268999999999971799861899998479878711320011-0021012220124683999978773200698997
Q gi|254781064|r 4 IVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLV-TDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID 82 (116)
Q Consensus 4 mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~-~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID 82 (116)
T Consensus 1 MItITd~A~~~l~~LL~~q~-~g~~LRV~V~~~Gcsgaey~~~f~~~de~~~dD~~~e~~gf~V~VD~~S~~yL~ga~ID 79 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQE-EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFNGFSAYVDELSAPFLEDAEID 79 (192)
T ss_pred CEEECHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCEEE
T ss_conf 95868999999999984388-89639999945998995688897467778885289986999999830266786788997
Q ss_pred EECCCCCCEEEEECCCCCCCC
Q ss_conf 631774451289888878767
Q gi|254781064|r 83 FKTEKLYSGFVFHNPNQVSAC 103 (116)
Q Consensus 83 y~~~~~~~~F~~~NPna~~~C 103 (116)
T Consensus 80 y~~d~~G~~ftIkNPNAK~~~ 100 (192)
T PRK11190 80 FVTDQLGSQLTLKAPNAKMRK 100 (192)
T ss_pred EECCCCCCEEEEECCCCCCCC
T ss_conf 652677877999899765555