HHsearch alignment for GI: 254781064 and conserved domain: PRK11190

>PRK11190 putative DNA uptake protein; Provisional.
Probab=99.96  E-value=1.3e-28  Score=181.53  Aligned_cols=99  Identities=23%  Similarity=0.355  Sum_probs=91.0

Q ss_pred             CEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHH-HCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE
Q ss_conf             165268999999999971799861899998479878711320011-0021012220124683999978773200698997
Q gi|254781064|r    4 IVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLV-TDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID   82 (116)
Q Consensus         4 mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~-~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID   82 (116)
T Consensus         1 MItITd~A~~~l~~LL~~q~-~g~~LRV~V~~~Gcsgaey~~~f~~~de~~~dD~~~e~~gf~V~VD~~S~~yL~ga~ID   79 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQE-EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFNGFSAYVDELSAPFLEDAEID   79 (192)
T ss_pred             CEEECHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCEEE
T ss_conf             95868999999999984388-89639999945998995688897467778885289986999999830266786788997


Q ss_pred             EECCCCCCEEEEECCCCCCCC
Q ss_conf             631774451289888878767
Q gi|254781064|r   83 FKTEKLYSGFVFHNPNQVSAC  103 (116)
Q Consensus        83 y~~~~~~~~F~~~NPna~~~C  103 (116)
T Consensus        80 y~~d~~G~~ftIkNPNAK~~~  100 (192)
T PRK11190         80 FVTDQLGSQLTLKAPNAKMRK  100 (192)
T ss_pred             EECCCCCCEEEEECCCCCCCC
T ss_conf             652677877999899765555