Query         gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs    111 out of 2959
Neff          7.0 
Searched_HMMs 33803
Date          Wed Jun  1 21:04:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781064.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2apn_A Protein HI1723; HI1723 100.0 1.2E-36 3.5E-41  226.3   8.3  110    1-111     5-114 (114)
  2 >2d2a_A SUFA protein; iron-sul 100.0 3.5E-36   1E-40  223.7  10.3  107    3-111    39-145 (145)
  3 >1x0g_A ISCA; [2Fe-2S], biosyn 100.0 4.1E-37 1.2E-41  228.9   5.6  110    4-114     1-112 (112)
  4 >2qgo_A Putative Fe-S biosynth  99.8 3.8E-22 1.1E-26  144.9   0.5  107    1-111     1-124 (141)
  5 >1r94_A Protein YFHF; tetramer  99.6 2.4E-16 7.2E-21  112.3   3.1   47   69-115    18-64  (71)
  6 >1nwb_A Hypothetical protein A  99.5 3.6E-15 1.1E-19  105.8   2.5   43   73-115    25-67  (72)
  7 >2p2e_A Putative Fe-S biosynth  99.5 1.3E-13 3.8E-18   97.0   6.5   91    3-96      2-104 (128)
  8 >1nwb_A Hypothetical protein A  99.4 1.7E-13 4.9E-18   96.4   3.1   52   25-77      1-52  (52)
  9 >1r94_A Protein YFHF; tetramer  99.2 8.3E-12 2.4E-16   86.9   4.4   47   26-73      1-47  (47)
 10 >2k4z_A DSRR; ISCA/SUFA/HESB l  94.8   0.017 5.1E-07   34.6   2.4   29   73-101    41-70  (77)
 11 >2k4z_A DSRR; ISCA/SUFA/HESB l  92.4    0.16 4.6E-06   29.3   3.9   46   25-72      2-47  (48)
 12 >1vs6_Z 50S ribosomal protein   50.3     6.6 0.00019   20.1   1.2   15   99-113    12-26  (28)
 13 >2csh_A Zinc finger protein 29  41.2     8.1 0.00024   19.6   0.5   13  101-113    11-23  (34)
 14 >3a43_A HYPD, hydrogenase nick  38.9      12 0.00034   18.8   1.0   29    5-33      4-33  (139)
 15 >3i0w_A 8-oxoguanine-DNA-glyco  31.6     7.1 0.00021   19.9  -1.1   26   89-114    10-38  (80)
 16 >2kdx_A HYPA, hydrogenase/urea  25.0      27  0.0008   16.7   0.9   30    5-34      6-36  (119)
 17 >1ivy_A Human protective prote  23.7      57  0.0017   14.9   4.0   68   23-98     44-112 (348)
 18 >2d0b_A RNAse HIII, ribonuclea  22.6      61  0.0018   14.7   3.1   43    1-43      1-46  (82)
 19 >1anp_A Atrial natriuretic pep  21.5      26 0.00076   16.8   0.3   15   29-43     13-28  (28)
 20 >1um8_A ATP-dependent CLP prot  21.1      45  0.0013   15.5   1.4   56    5-74     32-87  (104)

No 1  
>>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} (A:)
Probab=100.00  E-value=1.2e-36  Score=226.27  Aligned_cols=110  Identities=35%  Similarity=0.651  Sum_probs=104.9

Q ss_pred             CCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCE
Q ss_conf             98616526899999999997179986189999847987871132001100210122201246839999787732006989
Q gi|254781064|r    1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTE   80 (116)
Q Consensus         1 M~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~   80 (116)
                      |+.||+||++|+++|++++++++.++++|||.|+++||+|++|.|.+. +++.++|.+++.+|++|+||+.+++||+|++
T Consensus         5 ~~~~i~IT~~A~~~i~~ll~~~~~~~~~lRi~v~~~GC~G~~y~l~~~-~~~~~~D~v~~~~g~~v~id~~~~~~l~g~~   83 (114)
T 2apn_A            5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFD-EKVNDGDLTIEKSGVQLVIDPMSLQYLIGGT   83 (114)
T ss_dssp             SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEEC-CSCCSSCEEEECSSSEEEECHHHHHHHTTCE
T ss_pred             CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECC-CCCCCCCEEEEECCEEEEECCHHHHCCCCCE
T ss_conf             668828899999999999985799972699998458889815653014-6679997899949959999852641018989


Q ss_pred             EEEECCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             9763177445128988887876788521121
Q gi|254781064|r   81 IDFKTEKLYSGFVFHNPNQVSACGCGQSVEI  111 (116)
Q Consensus        81 IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~  111 (116)
                      |||+++..+++|+|+|||++++||||+||++
T Consensus        84 iDy~~~~~~~gF~i~nPn~~~~C~CG~sf~~  114 (114)
T 2apn_A           84 VDYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             EEEEECCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             9986568866279979997966389754409


No 2  
>>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} (A:)
Probab=100.00  E-value=3.5e-36  Score=223.67  Aligned_cols=107  Identities=38%  Similarity=0.720  Sum_probs=100.4

Q ss_pred             CCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE
Q ss_conf             61652689999999999717998618999984798787113200110021012220124683999978773200698997
Q gi|254781064|r    3 DIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID   82 (116)
Q Consensus         3 ~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID   82 (116)
                      .||+||++|+++|++++++++ ++++|||.|+++||+|++|.|.|+ +.+.++|.+++.+|++|+||+.+++||+|++||
T Consensus        39 ~~i~iT~~A~~~l~~ll~~~~-~~~~LRi~v~~~GCsG~~y~l~l~-~~~~~~D~v~e~~G~~v~id~~~~~~L~g~~ID  116 (145)
T 2d2a_A           39 QGLTLTPAAAIHIRELVAKQP-GMVGVRLGVKQTGCAGFGYVLDSV-SEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVD  116 (145)
T ss_dssp             CCCEECHHHHHHHHHHHHHST-TCCEEEEEEEEETTTEEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             CCEEECHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCCCEE-ECCCCCEEEEECCCCEEEECHHHHHHCCCCEEE
T ss_conf             767999999999999997399-984699999668747876423220-012440379973794588648888247997998


Q ss_pred             EECCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             63177445128988887876788521121
Q gi|254781064|r   83 FKTEKLYSGFVFHNPNQVSACGCGQSVEI  111 (116)
Q Consensus        83 y~~~~~~~~F~~~NPna~~~CgCG~SF~~  111 (116)
                      |+++..+++|+|.|||++++||||+||++
T Consensus       117 y~~~~~g~~F~i~nPn~~~~CgCG~SF~v  145 (145)
T 2d2a_A          117 FVREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             EEECCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             74568866079989898952489877759


No 3  
>>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} (A:)
Probab=100.00  E-value=4.1e-37  Score=228.88  Aligned_cols=110  Identities=26%  Similarity=0.520  Sum_probs=102.7

Q ss_pred             CEEECHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEE
Q ss_conf             165268999999999971799--861899998479878711320011002101222012468399997877320069899
Q gi|254781064|r    4 IVTMTEAAVYRIKEIVFNSQG--KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEI   81 (116)
Q Consensus         4 mi~IT~~A~~~i~~l~~~~~~--~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~I   81 (116)
                      ||+|||+|+++|+++++.++.  ++++|||.|+++||+|++|.|.|. +++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         1 Mi~IT~~A~~~i~~l~~~~~~~~~~~~lRi~v~~~GC~G~~y~l~l~-~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~i   79 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALV-AEPKPTDLLTQSQGWTIAIAAEAAELLRGLRV   79 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEEC-SSCCTTCEEECSSSCCEEECGGGHHHHTTCEE
T ss_pred             CEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEECCHHHHCCCCEE
T ss_conf             98969999999999997513358850899998479857857562121-11133231114478689991842504598699


Q ss_pred             EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             763177445128988887876788521121201
Q gi|254781064|r   82 DFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA  114 (116)
Q Consensus        82 Dy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~  114 (116)
                      ||+++.++++|+|+|||++++||||+||++++.
T Consensus        80 Dy~~~~~~~gF~i~nPn~~~~CgCG~SF~~~~~  112 (112)
T 1x0g_A           80 DYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS  112 (112)
T ss_dssp             EEEEETTEEEEEEECTTCSEECSSSSEEECCCC
T ss_pred             EEECCCCCCCEEEECCCCCCCCCCCCCEEECCC
T ss_conf             873388767079989998841689987205779


No 4  
>>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} (A:)
Probab=99.83  E-value=3.8e-22  Score=144.92  Aligned_cols=107  Identities=15%  Similarity=0.224  Sum_probs=87.4

Q ss_pred             CCCC-EEECHHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCC-CCEEEEHHHHCCCCCCCCEECCC-CEEEEECHHH
Q ss_conf             9861-65268999999999971799-----861899998479878-71132001100210122201246-8399997877
Q gi|254781064|r    1 MSDI-VTMTEAAVYRIKEIVFNSQG-----KAQGIRISLKKGGCA-GLEYMVDLVTDNPVDGDDLIEKD-GVKVWIDSAS   72 (116)
Q Consensus         1 M~~m-i~IT~~A~~~i~~l~~~~~~-----~~~~lRi~v~~gGC~-G~~Y~l~~~~~~~~~~D~~~~~~-g~~i~id~~s   72 (116)
                      |+.| |+|||+|+++|++++.....     +...+|++++++||+ |++|.|.++++...+.|.+++.+ |++|+|++.+
T Consensus         1 m~~M~ItiT~~A~~~L~~~l~~~~~~~l~~~dg~~~~s~~G~gCs~g~~y~l~~v~~~~~~~d~~iesn~G~~i~v~~~s   80 (141)
T 2qgo_A            1 MSLLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFD   80 (141)
T ss_dssp             ---CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHH
T ss_pred             CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCEEEECCEEEEEEEECCCCCCCEEECCCCCCEEEECCCC
T ss_conf             90489998999999999842889549999847987122018766508998899983678986636037898536766642


Q ss_pred             HHHH-CCCEEEEECCCCCCEEEEECCCCC--------CCCCCCCCCCC
Q ss_conf             3200-698997631774451289888878--------76788521121
Q gi|254781064|r   73 LLYM-LGTEIDFKTEKLYSGFVFHNPNQV--------SACGCGQSVEI  111 (116)
Q Consensus        73 ~~~L-~g~~IDy~~~~~~~~F~~~NPna~--------~~CgCG~SF~~  111 (116)
                      ..|| .|++|||++.    +|+|+|||+.        ..||||+||.-
T Consensus        81 ~~fld~gl~iD~~~~----~f~l~npn~~l~~nv~i~~~~~~~~s~~~  124 (141)
T 2qgo_A           81 KTMLGPNMVMDYNAG----SLSLSSDEGLLDGSVDIGNGAALLKANKN  124 (141)
T ss_dssp             HTTSCSSEEEEEETT----EEEEEETTEEEEEEEEEEEHHHHHHHHHH
T ss_pred             HHHCCCCEEEECCCC----EEEECCCCCEECCCCEEEECHHHHHHHHC
T ss_conf             422178818825889----78874865342598279773543336642


No 5  
>>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:1-22,A:70-118)
Probab=99.61  E-value=2.4e-16  Score=112.33  Aligned_cols=47  Identities=38%  Similarity=0.726  Sum_probs=43.0

Q ss_pred             CHHHHHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             78773200698997631774451289888878767885211212012
Q gi|254781064|r   69 DSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRAD  115 (116)
Q Consensus        69 d~~s~~~L~g~~IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~~  115 (116)
                      ...-.+||+|++|||++++++++|+|.||||+++||||+||++++++
T Consensus        18 ~~~~~~yL~GstIDY~~~li~sgF~f~NPNA~~sCGCG~SFs~~~~~   64 (71)
T 1r94_A           18 ANRGKQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAAL   64 (71)
T ss_dssp             HHHCCHHHTTCEEEEEEETTEEEEEEECTTCCC--------------
T ss_pred             HHCCCHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEECHHH
T ss_conf             74899763686998810688673799899988506898665038457


No 6  
>>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:1-29,A:82-124)
Probab=99.52  E-value=3.6e-15  Score=105.78  Aligned_cols=43  Identities=30%  Similarity=0.634  Sum_probs=38.7

Q ss_pred             HHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             3200698997631774451289888878767885211212012
Q gi|254781064|r   73 LLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRAD  115 (116)
Q Consensus        73 ~~~L~g~~IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~~  115 (116)
                      ...-.|++|||++++++++|+|.||||+++||||+||+++..+
T Consensus        25 ~~~~~GttIDYve~li~sgF~f~NPNA~~sCGCGeSFsv~~~~   67 (72)
T 1nwb_A           25 QENNIGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLEH   67 (72)
T ss_dssp             HTTTCTCEEEEEEETTEEEEEEECC------------------
T ss_pred             HHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEECCCC
T ss_conf             7537899999741688670799898989524885688326624


No 7  
>>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} (A:)
Probab=99.45  E-value=1.3e-13  Score=97.05  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=72.4

Q ss_pred             CC-EEECHHHHHHHHHHHHHCCCCCCEEEEE------EECCCCC-CCEEEEHHHHC---CCCCCCCEECCCCEEEEECHH
Q ss_conf             61-6526899999999997179986189999------8479878-71132001100---210122201246839999787
Q gi|254781064|r    3 DI-VTMTEAAVYRIKEIVFNSQGKAQGIRIS------LKKGGCA-GLEYMVDLVTD---NPVDGDDLIEKDGVKVWIDSA   71 (116)
Q Consensus         3 ~m-i~IT~~A~~~i~~l~~~~~~~~~~lRi~------v~~gGC~-G~~Y~l~~~~~---~~~~~D~~~~~~g~~i~id~~   71 (116)
                      +| |+||++|+++|++++.+. ++...||+.      .+++||+ |..|.|.++.+   .+.+.|.+++.++++|+|++.
T Consensus         2 ~M~ItiTe~A~~~l~~~~~~~-~~~l~L~~ddG~g~~s~gc~C~~g~~y~l~~v~e~~~~~~~~d~~ie~~~~~i~i~~~   80 (128)
T 2p2e_A            2 SLKITVTDDAAKKLQRYTDDS-NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDXDYKKDYNEVIDSNIGKFYYKGY   80 (128)
T ss_dssp             -CEEEECHHHHHHHHHHHTCT-TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred             EEEEEECHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCEEECCC
T ss_conf             389998999999999864767-8669999848988666676201388989999817778897435574268766888661


Q ss_pred             HHHHH-CCCEEEEECCCCCCEEEEEC
Q ss_conf             73200-69899763177445128988
Q gi|254781064|r   72 SLLYM-LGTEIDFKTEKLYSGFVFHN   96 (116)
Q Consensus        72 s~~~L-~g~~IDy~~~~~~~~F~~~N   96 (116)
                      +..|| .|++|||.+.  ...|.+++
T Consensus        81 s~~fld~g~~lD~~~~--~~~l~Lks  104 (128)
T 2p2e_A           81 SKXYXDDNXKISLNTN--NSLLRLTG  104 (128)
T ss_dssp             GGGGSCSEEEEEECSS--SSCEEEEE
T ss_pred             CHHHCCCCCEEEECCC--CCEEEEEC
T ss_conf             3111189738988588--88899605


No 8  
>>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:30-81)
Probab=99.38  E-value=1.7e-13  Score=96.44  Aligned_cols=52  Identities=38%  Similarity=0.678  Sum_probs=47.9

Q ss_pred             CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHC
Q ss_conf             86189999847987871132001100210122201246839999787732006
Q gi|254781064|r   25 KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYML   77 (116)
Q Consensus        25 ~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~   77 (116)
                      ++++|||+|++||||||+|.|+++ +.+.++|.+++.+|++|+||+.|++||+
T Consensus         1 ~~~glRi~V~~gGCsG~~Y~~~~~-~~~~~~D~v~~~~g~~v~vd~~s~~~L~   52 (52)
T 1nwb_A            1 ENPILRIRVVPGGCSGFQYAMGFD-DTVEEGDHVFEYDGVKVVIDPFSMPYVN   52 (52)
T ss_dssp             SSCEEEECCCCCCTTCCCCCCCEE-CSCCSSCCCCCCSSSEEEECTTTGGGST
T ss_pred             CCCEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEECCCEEEEECHHHHHHHC
T ss_conf             885799998189978737655444-5534565157628749998737863518


No 9  
>>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:23-69)
Probab=99.22  E-value=8.3e-12  Score=86.91  Aligned_cols=47  Identities=38%  Similarity=0.823  Sum_probs=42.9

Q ss_pred             CCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHH
Q ss_conf             618999984798787113200110021012220124683999978773
Q gi|254781064|r   26 AQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASL   73 (116)
Q Consensus        26 ~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~   73 (116)
                      +++|||.|+++|||||+|.|+++ +++.++|.+++.+|++|+||++|+
T Consensus         1 g~glRi~V~~gGCsG~~Y~~~~~-~~~~~~D~v~e~~gi~v~vd~~Sl   47 (47)
T 1r94_A            1 GFGLRLGVRTSGCSGMAYVLEFV-DEPTPEDIVFEDKGVKVVVDGKSL   47 (47)
T ss_dssp             CSEEEEEEEECSSSCEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGH
T ss_pred             CEEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEEECCEEEEECHHHH
T ss_conf             72899999179988748998774-679999899995998999988999


No 10 
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:1-41,A:90-125)
Probab=94.76  E-value=0.017  Score=34.60  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=22.5

Q ss_pred             HHHHCCCEEEEECCCC-CCEEEEECCCCCC
Q ss_conf             3200698997631774-4512898888787
Q gi|254781064|r   73 LLYMLGTEIDFKTEKL-YSGFVFHNPNQVS  101 (116)
Q Consensus        73 ~~~L~g~~IDy~~~~~-~~~F~~~NPna~~  101 (116)
                      -.+|+|+++||++-.. +-.|+|.|||-..
T Consensus        41 gsLLeg~vlDfveie~g~~hFIFmNPNDPn   70 (77)
T 2k4z_A           41 GSLLDQTTLDYVELEPGQFHFIFLNPRDPT   70 (77)
T ss_dssp             SHHHTTEEEEEEEEETTEEEEEEECSSSCS
T ss_pred             CCCCCCEEEEEECCCCCCCCEEEECCCCCC
T ss_conf             940597699886278872787987939998


No 11 
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:42-89)
Probab=92.42  E-value=0.16  Score=29.27  Aligned_cols=46  Identities=15%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHH
Q ss_conf             861899998479878711320011002101222012468399997877
Q gi|254781064|r   25 KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSAS   72 (116)
Q Consensus        25 ~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s   72 (116)
                      ++..|||...---=.-..|.|.|  |...++|..+..+|+.++|+|..
T Consensus         2 egm~LRlaa~Rn~DGsIeY~MGF--Dd~~d~Di~~~sEGv~iVi~P~~   47 (48)
T 2k4z_A            2 EGMCLRLAAGRNPDGSIDYRMGF--DDLTEDDIRLTSEGVEIVIAPDY   47 (48)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEE--ECCCSSSCEEECSSCEEECCTTT
T ss_pred             CCCEEEEEEECCCCCCCEEEEEE--CCCCCCEEEEECCCCEEEECCCC
T ss_conf             87179999826998984876774--24664249998267459971310


No 12 
>>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:1-28)
Probab=50.33  E-value=6.6  Score=20.14  Aligned_cols=15  Identities=27%  Similarity=0.873  Sum_probs=11.6

Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             787678852112120
Q gi|254781064|r   99 QVSACGCGQSVEIKR  113 (116)
Q Consensus        99 a~~~CgCG~SF~~~~  113 (116)
                      ++-+|.||..|..+.
T Consensus        12 ~~v~CsCGn~f~TrS   26 (28)
T 1vs6_Z           12 ITASCSCGNVMKIRS   26 (28)
T ss_dssp             CBCCCCSSCCCCCBC
T ss_pred             EEEEECCCCEEEEEE
T ss_conf             999978999999816


No 13 
>>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-34)
Probab=41.16  E-value=8.1  Score=19.64  Aligned_cols=13  Identities=38%  Similarity=0.807  Sum_probs=10.3

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             7678852112120
Q gi|254781064|r  101 SACGCGQSVEIKR  113 (116)
Q Consensus       101 ~~CgCG~SF~~~~  113 (116)
                      --|-||.||+-|.
T Consensus        11 ~~C~CGKsFtHKS   23 (34)
T 2csh_A           11 YPCQCGKSFTHKS   23 (34)
T ss_dssp             EECTTSCEESSHH
T ss_pred             CCCCCCCEECCHH
T ss_conf             7279998268743


No 14 
>>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:)
Probab=38.89  E-value=12  Score=18.78  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=15.6

Q ss_pred             EEECHHHHHHHHHHHHHCCC-CCCEEEEEE
Q ss_conf             65268999999999971799-861899998
Q gi|254781064|r    5 VTMTEAAVYRIKEIVFNSQG-KAQGIRISL   33 (116)
Q Consensus         5 i~IT~~A~~~i~~l~~~~~~-~~~~lRi~v   33 (116)
                      +.|..+-.+.+.+..+.++. +...+++.|
T Consensus         4 lSia~~ii~~v~~~a~~~~~~rV~~V~l~I   33 (139)
T 3a43_A            4 WALADAIVRTVLDYAQREGASRVKAVRVVL   33 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             999999999999999983994899999998


No 15 
>>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:1-80)
Probab=31.55  E-value=7.1  Score=19.94  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=15.9

Q ss_pred             CCEEEEECC---CCCCCCCCCCCCCCCCC
Q ss_conf             451289888---87876788521121201
Q gi|254781064|r   89 YSGFVFHNP---NQVSACGCGQSVEIKRA  114 (116)
Q Consensus        89 ~~~F~~~NP---na~~~CgCG~SF~~~~~  114 (116)
                      ....++..+   +-..++-||.||..++.
T Consensus        10 ~~~~i~~~~~~fdL~~tl~~GQ~FRW~~~   38 (80)
T 3i0w_A           10 KDSVIVRNVENFELKDIFDCGQCFRWHRQ   38 (80)
T ss_dssp             SSEEEEESCCSCCHHHHHSSSSCSSEEEC
T ss_pred             CCCEEEEECCCCCHHHHHCCCCEECEEEE
T ss_conf             89468601534899998146780210884


No 16 
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=24.96  E-value=27  Score=16.69  Aligned_cols=30  Identities=10%  Similarity=0.151  Sum_probs=17.4

Q ss_pred             EEECHHHHHHHHHHHHHCCC-CCCEEEEEEE
Q ss_conf             65268999999999971799-8618999984
Q gi|254781064|r    5 VTMTEAAVYRIKEIVFNSQG-KAQGIRISLK   34 (116)
Q Consensus         5 i~IT~~A~~~i~~l~~~~~~-~~~~lRi~v~   34 (116)
                      +.|+.+-.+.+.+..+.++. +...+++.|-
T Consensus         6 ~si~~~iv~~v~~~a~~~~~~~V~~V~l~IG   36 (119)
T 2kdx_A            6 YSVVSSLIALCEEHAKKNQAHKIERVVVGIG   36 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             9999999999999999859958999999988


No 17 
>>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} (A:1-199,A:304-452)
Probab=23.75  E-value=57  Score=14.86  Aligned_cols=68  Identities=21%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEEECC-CCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEEEECCCCCCEEEEECCC
Q ss_conf             99861899998479-87871132001100210122201246839999787732006989976317744512898888
Q gi|254781064|r   23 QGKAQGIRISLKKG-GCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPN   98 (116)
Q Consensus        23 ~~~~~~lRi~v~~g-GC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~IDy~~~~~~~~F~~~NPn   98 (116)
                      ++...-|-|-+.|| ||+++.+.|.    +  .+--.+..++.++...+.|  +.+-+.|=|++...|.||...++.
T Consensus        44 ~~~~~Pl~lwlnGGPG~SS~~~~~~----e--~GP~~~~~~~~~~~~n~~s--W~~~anllfiDqP~gtGfS~~~~~  112 (348)
T 1ivy_A           44 DPENSPVVLWLNGGPGCSSLDGLLT----E--HGPFLVQPDGVTLEYNPYS--WNLIANVLYLESPAGVGFSYSDDK  112 (348)
T ss_dssp             CGGGSCEEEEECCTTTBCTHHHHHT----T--TSSEEECTTSSCEEECTTC--GGGSSEEEEECCSTTSTTCEESSC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHH----H--CCCEEECCCCCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             9887988999889883888887887----0--5892885899713438862--102257799975787651577887


No 18 
>>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:1-82)
Probab=22.56  E-value=61  Score=14.72  Aligned_cols=43  Identities=12%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCC-CEEECHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCEE
Q ss_conf             986-1652689999999999717--998618999984798787113
Q gi|254781064|r    1 MSD-IVTMTEAAVYRIKEIVFNS--QGKAQGIRISLKKGGCAGLEY   43 (116)
Q Consensus         1 M~~-mi~IT~~A~~~i~~l~~~~--~~~~~~lRi~v~~gGC~G~~Y   43 (116)
                      |.+ .+++|+...++|++.....  ....-+.|+.++..||.=-.|
T Consensus         1 M~~~v~kl~~~q~~~l~~~y~~~~~~~~~py~~F~aK~~~~tIt~Y   46 (82)
T 2d0b_A            1 MSNYVIQADQQLLDALRAHYEGALSDRLPAGALFAVKRPDVVITAY   46 (82)
T ss_dssp             -CEEEEECCHHHHHHHHHHSTTCBCSSCCTTEEEEECCTTCEEEEE
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
T ss_conf             9738996699999999999987413479977589994799589999


No 19 
>>1anp_A Atrial natriuretic peptide; hypotensive hormone; NMR {Homo sapiens} (A:)
Probab=21.53  E-value=26  Score=16.83  Aligned_cols=15  Identities=33%  Similarity=0.782  Sum_probs=8.7

Q ss_pred             EEEEEECC-CCCCCEE
Q ss_conf             99998479-8787113
Q gi|254781064|r   29 IRISLKKG-GCAGLEY   43 (116)
Q Consensus        29 lRi~v~~g-GC~G~~Y   43 (116)
                      =||...+| ||+-|.|
T Consensus        13 d~igaqsglgcns~r~   28 (28)
T 1anp_A           13 DSIRAQSGLGCNSFRY   28 (28)
T ss_pred             HHHCCCCCCCCCCCCC
T ss_conf             0000334667454549


No 20 
>>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:273-376)
Probab=21.08  E-value=45  Score=15.46  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             EEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHH
Q ss_conf             6526899999999997179986189999847987871132001100210122201246839999787732
Q gi|254781064|r    5 VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLL   74 (116)
Q Consensus         5 i~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~   74 (116)
                      +++|+.|...|.+...+.+-            |.-|+.--++-+-...  ..++...++-.++|++..+.
T Consensus        32 L~Ftd~Al~~IA~~A~~~~t------------GAR~Lrsi~E~~l~d~--mfe~p~~~~~~v~It~~~V~   87 (104)
T 1um8_A           32 LIFEEEAIKEIAQLALERKT------------GARGLRAIIEDFCLDI--MFDLPKLKGSEVRITKDCVL   87 (104)
T ss_dssp             EEECHHHHHHHHHHHHHTTC------------TGGGHHHHHHHHHHHH--HHTGGGGTTSEEEECHHHHT
T ss_pred             EEECHHHHHHHHHHCCCCCC------------CCHHHHHHHHHHHHHH--HCCCCCCCCCEEEECHHHHC
T ss_conf             99888999999996548776------------8367899999999998--63387789998997879966


Done!