Query gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 116 No_of_seqs 111 out of 2959 Neff 7.0 Searched_HMMs 33803 Date Wed Jun 1 21:04:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781064.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2apn_A Protein HI1723; HI1723 100.0 1.2E-36 3.5E-41 226.3 8.3 110 1-111 5-114 (114) 2 >2d2a_A SUFA protein; iron-sul 100.0 3.5E-36 1E-40 223.7 10.3 107 3-111 39-145 (145) 3 >1x0g_A ISCA; [2Fe-2S], biosyn 100.0 4.1E-37 1.2E-41 228.9 5.6 110 4-114 1-112 (112) 4 >2qgo_A Putative Fe-S biosynth 99.8 3.8E-22 1.1E-26 144.9 0.5 107 1-111 1-124 (141) 5 >1r94_A Protein YFHF; tetramer 99.6 2.4E-16 7.2E-21 112.3 3.1 47 69-115 18-64 (71) 6 >1nwb_A Hypothetical protein A 99.5 3.6E-15 1.1E-19 105.8 2.5 43 73-115 25-67 (72) 7 >2p2e_A Putative Fe-S biosynth 99.5 1.3E-13 3.8E-18 97.0 6.5 91 3-96 2-104 (128) 8 >1nwb_A Hypothetical protein A 99.4 1.7E-13 4.9E-18 96.4 3.1 52 25-77 1-52 (52) 9 >1r94_A Protein YFHF; tetramer 99.2 8.3E-12 2.4E-16 86.9 4.4 47 26-73 1-47 (47) 10 >2k4z_A DSRR; ISCA/SUFA/HESB l 94.8 0.017 5.1E-07 34.6 2.4 29 73-101 41-70 (77) 11 >2k4z_A DSRR; ISCA/SUFA/HESB l 92.4 0.16 4.6E-06 29.3 3.9 46 25-72 2-47 (48) 12 >1vs6_Z 50S ribosomal protein 50.3 6.6 0.00019 20.1 1.2 15 99-113 12-26 (28) 13 >2csh_A Zinc finger protein 29 41.2 8.1 0.00024 19.6 0.5 13 101-113 11-23 (34) 14 >3a43_A HYPD, hydrogenase nick 38.9 12 0.00034 18.8 1.0 29 5-33 4-33 (139) 15 >3i0w_A 8-oxoguanine-DNA-glyco 31.6 7.1 0.00021 19.9 -1.1 26 89-114 10-38 (80) 16 >2kdx_A HYPA, hydrogenase/urea 25.0 27 0.0008 16.7 0.9 30 5-34 6-36 (119) 17 >1ivy_A Human protective prote 23.7 57 0.0017 14.9 4.0 68 23-98 44-112 (348) 18 >2d0b_A RNAse HIII, ribonuclea 22.6 61 0.0018 14.7 3.1 43 1-43 1-46 (82) 19 >1anp_A Atrial natriuretic pep 21.5 26 0.00076 16.8 0.3 15 29-43 13-28 (28) 20 >1um8_A ATP-dependent CLP prot 21.1 45 0.0013 15.5 1.4 56 5-74 32-87 (104) No 1 >>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} (A:) Probab=100.00 E-value=1.2e-36 Score=226.27 Aligned_cols=110 Identities=35% Similarity=0.651 Sum_probs=104.9 Q ss_pred CCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCE Q ss_conf 98616526899999999997179986189999847987871132001100210122201246839999787732006989 Q gi|254781064|r 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTE 80 (116) Q Consensus 1 M~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ 80 (116) |+.||+||++|+++|++++++++.++++|||.|+++||+|++|.|.+. +++.++|.+++.+|++|+||+.+++||+|++ T Consensus 5 ~~~~i~IT~~A~~~i~~ll~~~~~~~~~lRi~v~~~GC~G~~y~l~~~-~~~~~~D~v~~~~g~~v~id~~~~~~l~g~~ 83 (114) T 2apn_A 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFD-EKVNDGDLTIEKSGVQLVIDPMSLQYLIGGT 83 (114) T ss_dssp SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEEC-CSCCSSCEEEECSSSEEEECHHHHHHHTTCE T ss_pred CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECC-CCCCCCCEEEEECCEEEEECCHHHHCCCCCE T ss_conf 668828899999999999985799972699998458889815653014-6679997899949959999852641018989 Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 9763177445128988887876788521121 Q gi|254781064|r 81 IDFKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 (116) Q Consensus 81 IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~ 111 (116) |||+++..+++|+|+|||++++||||+||++ T Consensus 84 iDy~~~~~~~gF~i~nPn~~~~C~CG~sf~~ 114 (114) T 2apn_A 84 VDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114) T ss_dssp EEEECSSSCCEEEEECHHHHCCCCCCCCSCC T ss_pred EEEEECCCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 9986568866279979997966389754409 No 2 >>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} (A:) Probab=100.00 E-value=3.5e-36 Score=223.67 Aligned_cols=107 Identities=38% Similarity=0.720 Sum_probs=100.4 Q ss_pred CCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE Q ss_conf 61652689999999999717998618999984798787113200110021012220124683999978773200698997 Q gi|254781064|r 3 DIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID 82 (116) Q Consensus 3 ~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID 82 (116) .||+||++|+++|++++++++ ++++|||.|+++||+|++|.|.|+ +.+.++|.+++.+|++|+||+.+++||+|++|| T Consensus 39 ~~i~iT~~A~~~l~~ll~~~~-~~~~LRi~v~~~GCsG~~y~l~l~-~~~~~~D~v~e~~G~~v~id~~~~~~L~g~~ID 116 (145) T 2d2a_A 39 QGLTLTPAAAIHIRELVAKQP-GMVGVRLGVKQTGCAGFGYVLDSV-SEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVD 116 (145) T ss_dssp CCCEECHHHHHHHHHHHHHST-TCCEEEEEEEEETTTEEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE T ss_pred CCEEECHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCCCEE-ECCCCCEEEEECCCCEEEECHHHHHHCCCCEEE T ss_conf 767999999999999997399-984699999668747876423220-012440379973794588648888247997998 Q ss_pred EECCCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 63177445128988887876788521121 Q gi|254781064|r 83 FKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 (116) Q Consensus 83 y~~~~~~~~F~~~NPna~~~CgCG~SF~~ 111 (116) |+++..+++|+|.|||++++||||+||++ T Consensus 117 y~~~~~g~~F~i~nPn~~~~CgCG~SF~v 145 (145) T 2d2a_A 117 FVREGLNQIFKFHNPKAQNECGCGESFGV 145 (145) T ss_dssp EEEETTEEEEEEECTTTCSCCCCBCEEEC T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCC T ss_conf 74568866079989898952489877759 No 3 >>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} (A:) Probab=100.00 E-value=4.1e-37 Score=228.88 Aligned_cols=110 Identities=26% Similarity=0.520 Sum_probs=102.7 Q ss_pred CEEECHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEE Q ss_conf 165268999999999971799--861899998479878711320011002101222012468399997877320069899 Q gi|254781064|r 4 IVTMTEAAVYRIKEIVFNSQG--KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEI 81 (116) Q Consensus 4 mi~IT~~A~~~i~~l~~~~~~--~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~I 81 (116) ||+|||+|+++|+++++.++. ++++|||.|+++||+|++|.|.|. +++.++|.+++.+|++|+||+.+++||+|++| T Consensus 1 Mi~IT~~A~~~i~~l~~~~~~~~~~~~lRi~v~~~GC~G~~y~l~l~-~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~i 79 (112) T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALV-AEPKPTDLLTQSQGWTIAIAAEAAELLRGLRV 79 (112) T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEEC-SSCCTTCEEECSSSCCEEECGGGHHHHTTCEE T ss_pred CEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEECCHHHHCCCCEE T ss_conf 98969999999999997513358850899998479857857562121-11133231114478689991842504598699 Q ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 763177445128988887876788521121201 Q gi|254781064|r 82 DFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 (116) Q Consensus 82 Dy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~ 114 (116) ||+++.++++|+|+|||++++||||+||++++. T Consensus 80 Dy~~~~~~~gF~i~nPn~~~~CgCG~SF~~~~~ 112 (112) T 1x0g_A 80 DYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112 (112) T ss_dssp EEEEETTEEEEEEECTTCSEECSSSSEEECCCC T ss_pred EEECCCCCCCEEEECCCCCCCCCCCCCEEECCC T ss_conf 873388767079989998841689987205779 No 4 >>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} (A:) Probab=99.83 E-value=3.8e-22 Score=144.92 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=87.4 Q ss_pred CCCC-EEECHHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCC-CCEEEEHHHHCCCCCCCCEECCC-CEEEEECHHH Q ss_conf 9861-65268999999999971799-----861899998479878-71132001100210122201246-8399997877 Q gi|254781064|r 1 MSDI-VTMTEAAVYRIKEIVFNSQG-----KAQGIRISLKKGGCA-GLEYMVDLVTDNPVDGDDLIEKD-GVKVWIDSAS 72 (116) Q Consensus 1 M~~m-i~IT~~A~~~i~~l~~~~~~-----~~~~lRi~v~~gGC~-G~~Y~l~~~~~~~~~~D~~~~~~-g~~i~id~~s 72 (116) |+.| |+|||+|+++|++++..... +...+|++++++||+ |++|.|.++++...+.|.+++.+ |++|+|++.+ T Consensus 1 m~~M~ItiT~~A~~~L~~~l~~~~~~~l~~~dg~~~~s~~G~gCs~g~~y~l~~v~~~~~~~d~~iesn~G~~i~v~~~s 80 (141) T 2qgo_A 1 MSLLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFD 80 (141) T ss_dssp ---CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHH T ss_pred CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCEEEECCEEEEEEEECCCCCCCEEECCCCCCEEEECCCC T ss_conf 90489998999999999842889549999847987122018766508998899983678986636037898536766642 Q ss_pred HHHH-CCCEEEEECCCCCCEEEEECCCCC--------CCCCCCCCCCC Q ss_conf 3200-698997631774451289888878--------76788521121 Q gi|254781064|r 73 LLYM-LGTEIDFKTEKLYSGFVFHNPNQV--------SACGCGQSVEI 111 (116) Q Consensus 73 ~~~L-~g~~IDy~~~~~~~~F~~~NPna~--------~~CgCG~SF~~ 111 (116) ..|| .|++|||++. +|+|+|||+. ..||||+||.- T Consensus 81 ~~fld~gl~iD~~~~----~f~l~npn~~l~~nv~i~~~~~~~~s~~~ 124 (141) T 2qgo_A 81 KTMLGPNMVMDYNAG----SLSLSSDEGLLDGSVDIGNGAALLKANKN 124 (141) T ss_dssp HTTSCSSEEEEEETT----EEEEEETTEEEEEEEEEEEHHHHHHHHHH T ss_pred HHHCCCCEEEECCCC----EEEECCCCCEECCCCEEEECHHHHHHHHC T ss_conf 422178818825889----78874865342598279773543336642 No 5 >>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:1-22,A:70-118) Probab=99.61 E-value=2.4e-16 Score=112.33 Aligned_cols=47 Identities=38% Similarity=0.726 Sum_probs=43.0 Q ss_pred CHHHHHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 78773200698997631774451289888878767885211212012 Q gi|254781064|r 69 DSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRAD 115 (116) Q Consensus 69 d~~s~~~L~g~~IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~~ 115 (116) ...-.+||+|++|||++++++++|+|.||||+++||||+||++++++ T Consensus 18 ~~~~~~yL~GstIDY~~~li~sgF~f~NPNA~~sCGCG~SFs~~~~~ 64 (71) T 1r94_A 18 ANRGKQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAAL 64 (71) T ss_dssp HHHCCHHHTTCEEEEEEETTEEEEEEECTTCCC-------------- T ss_pred HHCCCHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEECHHH T ss_conf 74899763686998810688673799899988506898665038457 No 6 >>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:1-29,A:82-124) Probab=99.52 E-value=3.6e-15 Score=105.78 Aligned_cols=43 Identities=30% Similarity=0.634 Sum_probs=38.7 Q ss_pred HHHHCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 3200698997631774451289888878767885211212012 Q gi|254781064|r 73 LLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRAD 115 (116) Q Consensus 73 ~~~L~g~~IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~~ 115 (116) ...-.|++|||++++++++|+|.||||+++||||+||+++..+ T Consensus 25 ~~~~~GttIDYve~li~sgF~f~NPNA~~sCGCGeSFsv~~~~ 67 (72) T 1nwb_A 25 QENNIGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLEH 67 (72) T ss_dssp HTTTCTCEEEEEEETTEEEEEEECC------------------ T ss_pred HHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEECCCC T ss_conf 7537899999741688670799898989524885688326624 No 7 >>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} (A:) Probab=99.45 E-value=1.3e-13 Score=97.05 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=72.4 Q ss_pred CC-EEECHHHHHHHHHHHHHCCCCCCEEEEE------EECCCCC-CCEEEEHHHHC---CCCCCCCEECCCCEEEEECHH Q ss_conf 61-6526899999999997179986189999------8479878-71132001100---210122201246839999787 Q gi|254781064|r 3 DI-VTMTEAAVYRIKEIVFNSQGKAQGIRIS------LKKGGCA-GLEYMVDLVTD---NPVDGDDLIEKDGVKVWIDSA 71 (116) Q Consensus 3 ~m-i~IT~~A~~~i~~l~~~~~~~~~~lRi~------v~~gGC~-G~~Y~l~~~~~---~~~~~D~~~~~~g~~i~id~~ 71 (116) +| |+||++|+++|++++.+. ++...||+. .+++||+ |..|.|.++.+ .+.+.|.+++.++++|+|++. T Consensus 2 ~M~ItiTe~A~~~l~~~~~~~-~~~l~L~~ddG~g~~s~gc~C~~g~~y~l~~v~e~~~~~~~~d~~ie~~~~~i~i~~~ 80 (128) T 2p2e_A 2 SLKITVTDDAAKKLQRYTDDS-NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDXDYKKDYNEVIDSNIGKFYYKGY 80 (128) T ss_dssp -CEEEECHHHHHHHHHHHTCT-TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG T ss_pred EEEEEECHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCEEECCC T ss_conf 389998999999999864767-8669999848988666676201388989999817778897435574268766888661 Q ss_pred HHHHH-CCCEEEEECCCCCCEEEEEC Q ss_conf 73200-69899763177445128988 Q gi|254781064|r 72 SLLYM-LGTEIDFKTEKLYSGFVFHN 96 (116) Q Consensus 72 s~~~L-~g~~IDy~~~~~~~~F~~~N 96 (116) +..|| .|++|||.+. ...|.+++ T Consensus 81 s~~fld~g~~lD~~~~--~~~l~Lks 104 (128) T 2p2e_A 81 SKXYXDDNXKISLNTN--NSLLRLTG 104 (128) T ss_dssp GGGGSCSEEEEEECSS--SSCEEEEE T ss_pred CHHHCCCCCEEEECCC--CCEEEEEC T ss_conf 3111189738988588--88899605 No 8 >>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:30-81) Probab=99.38 E-value=1.7e-13 Score=96.44 Aligned_cols=52 Identities=38% Similarity=0.678 Sum_probs=47.9 Q ss_pred CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHC Q ss_conf 86189999847987871132001100210122201246839999787732006 Q gi|254781064|r 25 KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYML 77 (116) Q Consensus 25 ~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~ 77 (116) ++++|||+|++||||||+|.|+++ +.+.++|.+++.+|++|+||+.|++||+ T Consensus 1 ~~~glRi~V~~gGCsG~~Y~~~~~-~~~~~~D~v~~~~g~~v~vd~~s~~~L~ 52 (52) T 1nwb_A 1 ENPILRIRVVPGGCSGFQYAMGFD-DTVEEGDHVFEYDGVKVVIDPFSMPYVN 52 (52) T ss_dssp SSCEEEECCCCCCTTCCCCCCCEE-CSCCSSCCCCCCSSSEEEECTTTGGGST T ss_pred CCCEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEECCCEEEEECHHHHHHHC T ss_conf 885799998189978737655444-5534565157628749998737863518 No 9 >>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:23-69) Probab=99.22 E-value=8.3e-12 Score=86.91 Aligned_cols=47 Identities=38% Similarity=0.823 Sum_probs=42.9 Q ss_pred CCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHH Q ss_conf 618999984798787113200110021012220124683999978773 Q gi|254781064|r 26 AQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASL 73 (116) Q Consensus 26 ~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~ 73 (116) +++|||.|+++|||||+|.|+++ +++.++|.+++.+|++|+||++|+ T Consensus 1 g~glRi~V~~gGCsG~~Y~~~~~-~~~~~~D~v~e~~gi~v~vd~~Sl 47 (47) T 1r94_A 1 GFGLRLGVRTSGCSGMAYVLEFV-DEPTPEDIVFEDKGVKVVVDGKSL 47 (47) T ss_dssp CSEEEEEEEECSSSCEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGH T ss_pred CEEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEEECCEEEEECHHHH T ss_conf 72899999179988748998774-679999899995998999988999 No 10 >>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:1-41,A:90-125) Probab=94.76 E-value=0.017 Score=34.60 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=22.5 Q ss_pred HHHHCCCEEEEECCCC-CCEEEEECCCCCC Q ss_conf 3200698997631774-4512898888787 Q gi|254781064|r 73 LLYMLGTEIDFKTEKL-YSGFVFHNPNQVS 101 (116) Q Consensus 73 ~~~L~g~~IDy~~~~~-~~~F~~~NPna~~ 101 (116) -.+|+|+++||++-.. +-.|+|.|||-.. T Consensus 41 gsLLeg~vlDfveie~g~~hFIFmNPNDPn 70 (77) T 2k4z_A 41 GSLLDQTTLDYVELEPGQFHFIFLNPRDPT 70 (77) T ss_dssp SHHHTTEEEEEEEEETTEEEEEEECSSSCS T ss_pred CCCCCCEEEEEECCCCCCCCEEEECCCCCC T ss_conf 940597699886278872787987939998 No 11 >>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:42-89) Probab=92.42 E-value=0.16 Score=29.27 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=34.3 Q ss_pred CCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHH Q ss_conf 861899998479878711320011002101222012468399997877 Q gi|254781064|r 25 KAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSAS 72 (116) Q Consensus 25 ~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s 72 (116) ++..|||...---=.-..|.|.| |...++|..+..+|+.++|+|.. T Consensus 2 egm~LRlaa~Rn~DGsIeY~MGF--Dd~~d~Di~~~sEGv~iVi~P~~ 47 (48) T 2k4z_A 2 EGMCLRLAAGRNPDGSIDYRMGF--DDLTEDDIRLTSEGVEIVIAPDY 47 (48) T ss_dssp TTCEEEEEEEECTTSCEEEEEEE--ECCCSSSCEEECSSCEEECCTTT T ss_pred CCCEEEEEEECCCCCCCEEEEEE--CCCCCCEEEEECCCCEEEECCCC T ss_conf 87179999826998984876774--24664249998267459971310 No 12 >>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:1-28) Probab=50.33 E-value=6.6 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.873 Sum_probs=11.6 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 787678852112120 Q gi|254781064|r 99 QVSACGCGQSVEIKR 113 (116) Q Consensus 99 a~~~CgCG~SF~~~~ 113 (116) ++-+|.||..|..+. T Consensus 12 ~~v~CsCGn~f~TrS 26 (28) T 1vs6_Z 12 ITASCSCGNVMKIRS 26 (28) T ss_dssp CBCCCCSSCCCCCBC T ss_pred EEEEECCCCEEEEEE T ss_conf 999978999999816 No 13 >>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-34) Probab=41.16 E-value=8.1 Score=19.64 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.3 Q ss_pred CCCCCCCCCCCCC Q ss_conf 7678852112120 Q gi|254781064|r 101 SACGCGQSVEIKR 113 (116) Q Consensus 101 ~~CgCG~SF~~~~ 113 (116) --|-||.||+-|. T Consensus 11 ~~C~CGKsFtHKS 23 (34) T 2csh_A 11 YPCQCGKSFTHKS 23 (34) T ss_dssp EECTTSCEESSHH T ss_pred CCCCCCCEECCHH T ss_conf 7279998268743 No 14 >>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:) Probab=38.89 E-value=12 Score=18.78 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=15.6 Q ss_pred EEECHHHHHHHHHHHHHCCC-CCCEEEEEE Q ss_conf 65268999999999971799-861899998 Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQG-KAQGIRISL 33 (116) Q Consensus 5 i~IT~~A~~~i~~l~~~~~~-~~~~lRi~v 33 (116) +.|..+-.+.+.+..+.++. +...+++.| T Consensus 4 lSia~~ii~~v~~~a~~~~~~rV~~V~l~I 33 (139) T 3a43_A 4 WALADAIVRTVLDYAQREGASRVKAVRVVL 33 (139) T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 999999999999999983994899999998 No 15 >>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A (A:1-80) Probab=31.55 E-value=7.1 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=15.9 Q ss_pred CCEEEEECC---CCCCCCCCCCCCCCCCC Q ss_conf 451289888---87876788521121201 Q gi|254781064|r 89 YSGFVFHNP---NQVSACGCGQSVEIKRA 114 (116) Q Consensus 89 ~~~F~~~NP---na~~~CgCG~SF~~~~~ 114 (116) ....++..+ +-..++-||.||..++. T Consensus 10 ~~~~i~~~~~~fdL~~tl~~GQ~FRW~~~ 38 (80) T 3i0w_A 10 KDSVIVRNVENFELKDIFDCGQCFRWHRQ 38 (80) T ss_dssp SSEEEEESCCSCCHHHHHSSSSCSSEEEC T ss_pred CCCEEEEECCCCCHHHHHCCCCEECEEEE T ss_conf 89468601534899998146780210884 No 16 >>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:) Probab=24.96 E-value=27 Score=16.69 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=17.4 Q ss_pred EEECHHHHHHHHHHHHHCCC-CCCEEEEEEE Q ss_conf 65268999999999971799-8618999984 Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQG-KAQGIRISLK 34 (116) Q Consensus 5 i~IT~~A~~~i~~l~~~~~~-~~~~lRi~v~ 34 (116) +.|+.+-.+.+.+..+.++. +...+++.|- T Consensus 6 ~si~~~iv~~v~~~a~~~~~~~V~~V~l~IG 36 (119) T 2kdx_A 6 YSVVSSLIALCEEHAKKNQAHKIERVVVGIG 36 (119) T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 9999999999999999859958999999988 No 17 >>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} (A:1-199,A:304-452) Probab=23.75 E-value=57 Score=14.86 Aligned_cols=68 Identities=21% Similarity=0.392 Sum_probs=45.3 Q ss_pred CCCCCEEEEEEECC-CCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEEEECCCCCCEEEEECCC Q ss_conf 99861899998479-87871132001100210122201246839999787732006989976317744512898888 Q gi|254781064|r 23 QGKAQGIRISLKKG-GCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPN 98 (116) Q Consensus 23 ~~~~~~lRi~v~~g-GC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~IDy~~~~~~~~F~~~NPn 98 (116) ++...-|-|-+.|| ||+++.+.|. + .+--.+..++.++...+.| +.+-+.|=|++...|.||...++. T Consensus 44 ~~~~~Pl~lwlnGGPG~SS~~~~~~----e--~GP~~~~~~~~~~~~n~~s--W~~~anllfiDqP~gtGfS~~~~~ 112 (348) T 1ivy_A 44 DPENSPVVLWLNGGPGCSSLDGLLT----E--HGPFLVQPDGVTLEYNPYS--WNLIANVLYLESPAGVGFSYSDDK 112 (348) T ss_dssp CGGGSCEEEEECCTTTBCTHHHHHT----T--TSSEEECTTSSCEEECTTC--GGGSSEEEEECCSTTSTTCEESSC T ss_pred CCCCCCEEEEECCCCCHHHHHHHHH----H--CCCEEECCCCCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCCC T ss_conf 9887988999889883888887887----0--5892885899713438862--102257799975787651577887 No 18 >>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:1-82) Probab=22.56 E-value=61 Score=14.72 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.2 Q ss_pred CCC-CEEECHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCEE Q ss_conf 986-1652689999999999717--998618999984798787113 Q gi|254781064|r 1 MSD-IVTMTEAAVYRIKEIVFNS--QGKAQGIRISLKKGGCAGLEY 43 (116) Q Consensus 1 M~~-mi~IT~~A~~~i~~l~~~~--~~~~~~lRi~v~~gGC~G~~Y 43 (116) |.+ .+++|+...++|++..... ....-+.|+.++..||.=-.| T Consensus 1 M~~~v~kl~~~q~~~l~~~y~~~~~~~~~py~~F~aK~~~~tIt~Y 46 (82) T 2d0b_A 1 MSNYVIQADQQLLDALRAHYEGALSDRLPAGALFAVKRPDVVITAY 46 (82) T ss_dssp -CEEEEECCHHHHHHHHHHSTTCBCSSCCTTEEEEECCTTCEEEEE T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE T ss_conf 9738996699999999999987413479977589994799589999 No 19 >>1anp_A Atrial natriuretic peptide; hypotensive hormone; NMR {Homo sapiens} (A:) Probab=21.53 E-value=26 Score=16.83 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=8.7 Q ss_pred EEEEEECC-CCCCCEE Q ss_conf 99998479-8787113 Q gi|254781064|r 29 IRISLKKG-GCAGLEY 43 (116) Q Consensus 29 lRi~v~~g-GC~G~~Y 43 (116) =||...+| ||+-|.| T Consensus 13 d~igaqsglgcns~r~ 28 (28) T 1anp_A 13 DSIRAQSGLGCNSFRY 28 (28) T ss_pred HHHCCCCCCCCCCCCC T ss_conf 0000334667454549 No 20 >>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} (A:273-376) Probab=21.08 E-value=45 Score=15.46 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=29.8 Q ss_pred EEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHH Q ss_conf 6526899999999997179986189999847987871132001100210122201246839999787732 Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLL 74 (116) Q Consensus 5 i~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~ 74 (116) +++|+.|...|.+...+.+- |.-|+.--++-+-... ..++...++-.++|++..+. T Consensus 32 L~Ftd~Al~~IA~~A~~~~t------------GAR~Lrsi~E~~l~d~--mfe~p~~~~~~v~It~~~V~ 87 (104) T 1um8_A 32 LIFEEEAIKEIAQLALERKT------------GARGLRAIIEDFCLDI--MFDLPKLKGSEVRITKDCVL 87 (104) T ss_dssp EEECHHHHHHHHHHHHHTTC------------TGGGHHHHHHHHHHHH--HHTGGGGTTSEEEECHHHHT T ss_pred EEECHHHHHHHHHHCCCCCC------------CCHHHHHHHHHHHHHH--HCCCCCCCCCEEEECHHHHC T ss_conf 99888999999996548776------------8367899999999998--63387789998997879966 Done!