Query gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs 111 out of 2959
Neff 7.0
Searched_HMMs 23785
Date Wed Jun 1 01:13:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781064.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2a_A SUFA protein; iron-sulf 100.0 2.1E-39 8.8E-44 240.9 10.2 107 3-111 39-145 (145)
2 1nwb_A Hypothetical protein AQ 100.0 1.1E-39 4.8E-44 242.4 8.6 112 2-114 7-118 (124)
3 1r94_A Protein YFHF; tetrameri 100.0 3.8E-39 1.6E-43 239.4 10.1 110 1-114 1-110 (118)
4 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 1.6E-39 6.9E-44 241.5 5.6 110 4-114 1-112 (112)
5 2apn_A Protein HI1723; HI1723 100.0 5.1E-38 2.2E-42 233.1 8.3 110 1-111 5-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 100.0 1.2E-29 5E-34 186.1 9.6 97 3-101 21-118 (125)
7 2qgo_A Putative Fe-S biosynthe 98.2 9.9E-06 4.2E-10 51.9 9.4 90 1-98 1-103 (141)
8 2p2e_A Putative Fe-S biosynthe 97.8 5.5E-05 2.3E-09 47.8 6.9 90 1-95 1-103 (128)
9 3a43_A HYPD, hydrogenase nicke 27.7 16 0.00067 17.1 1.0 31 5-36 4-34 (139)
10 2kdx_A HYPA, hydrogenase/ureas 25.2 19 0.00078 16.7 0.9 29 5-33 6-35 (119)
No 1
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.1e-39 Score=240.87 Aligned_cols=107 Identities=38% Similarity=0.720 Sum_probs=99.1
Q ss_pred CCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE
Q ss_conf 61652689999999999717998618999984798787113200110021012220124683999978773200698997
Q gi|254781064|r 3 DIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID 82 (116)
Q Consensus 3 ~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID 82 (116)
+.|+||++|+++|++++++++ +..+|||+|++|||+||+|.|+++ +.+.++|.+++.+|++|+||+.|++||.|++||
T Consensus 39 q~ItITd~A~~~ik~ll~~~~-~~~~LRi~Vk~GGCsGf~Y~l~~~-~~~~~dD~v~~~~g~~v~Vd~~S~~~L~Gs~ID 116 (145)
T 2d2a_A 39 QGLTLTPAAAIHIRELVAKQP-GMVGVRLGVKQTGCAGFGYVLDSV-SEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVD 116 (145)
T ss_dssp CCCEECHHHHHHHHHHHHHST-TCCEEEEEEEEETTTEEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred CEEEECHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEEECCCC-CCCCCCCEEEECCCCEEEEEHHHHHHCCCCEEE
T ss_conf 608999999999999997399-961799999378648858573536-235678558973898999986886445897998
Q ss_pred EECCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 63177445128988887876788521121
Q gi|254781064|r 83 FKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 (116)
Q Consensus 83 y~~~~~~~~F~~~NPna~~~CgCG~SF~~ 111 (116)
|++++++++|+|+||||+++||||+||+|
T Consensus 117 y~~~~~gsgF~f~NPNa~~~CGCG~SFsV 145 (145)
T 2d2a_A 117 FVREGLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp EEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 85668867079989998952389877569
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=1.1e-39 Score=242.41 Aligned_cols=112 Identities=35% Similarity=0.623 Sum_probs=105.6
Q ss_pred CCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEE
Q ss_conf 86165268999999999971799861899998479878711320011002101222012468399997877320069899
Q gi|254781064|r 2 SDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEI 81 (116)
Q Consensus 2 ~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~I 81 (116)
+.||+||++|+++|++++++++.++++|||+|++|||+||+|.|+|. +.+.++|.+++.+|++|+||+.|++||+|++|
T Consensus 7 ~~mi~IT~~A~~~i~~l~~~~~~~~~~LRi~v~~gGC~G~~Y~l~~~-~~~~~~D~~~~~~g~~v~id~~s~~~L~gs~I 85 (124)
T 1nwb_A 7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFD-DTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL 85 (124)
T ss_dssp CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEE-CSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred CCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCC-CCCCCCCEEEECCCEEEEECHHHHHHHCCCEE
T ss_conf 86199889999999999985267886799998289977657731204-55235652686598599985478645289999
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 763177445128988887876788521121201
Q gi|254781064|r 82 DFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 (116)
Q Consensus 82 Dy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~ 114 (116)
||++++++++|+|+||||+++||||+||++.-+
T Consensus 86 Dy~~~~~~~~F~~~NPna~~~CgCG~SFs~~~~ 118 (124)
T 1nwb_A 86 DYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLE 118 (124)
T ss_dssp EEEEETTEEEEEEECC-----------------
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 986268877179989898951588568751762
No 3
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=3.8e-39 Score=239.45 Aligned_cols=110 Identities=39% Similarity=0.786 Sum_probs=102.5
Q ss_pred CCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCE
Q ss_conf 98616526899999999997179986189999847987871132001100210122201246839999787732006989
Q gi|254781064|r 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTE 80 (116)
Q Consensus 1 M~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ 80 (116)
|+ |+||++|+++|++++++++ ++++|||+|++|||+||+|.|++. +.+.++|.+++.+|++|+||+.|++||.|++
T Consensus 1 M~--ItIT~~A~~~i~~ll~~~~-~~~~lRi~v~~gGC~G~~y~~~~~-~~~~~~D~v~~~~g~~v~id~~s~~~L~G~~ 76 (118)
T 1r94_A 1 MS--ITLSDSAAARVNTFLANRG-KGFGLRLGVRTSGCSGMAYVLEFV-DEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQ 76 (118)
T ss_dssp CC--CEECHHHHHHHHHHHHHHC-CCSEEEEEEEECSSSCEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGHHHHTTCE
T ss_pred CE--EEECHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEECCCEEEEECHHHHHHHCCCE
T ss_conf 95--9989999999999997489-972899999489978628988764-4589987999809979999779987637879
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9763177445128988887876788521121201
Q gi|254781064|r 81 IDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 (116)
Q Consensus 81 IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~ 114 (116)
|||++++++++|+|+||||+++||||+||+++++
T Consensus 77 IDy~~~~~~~gF~f~NPna~~~CgCG~SF~~~~~ 110 (118)
T 1r94_A 77 LDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAA 110 (118)
T ss_dssp EEEEEETTEEEEEEECTTCCC-------------
T ss_pred EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 9873078867479989998840589876233825
No 4
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.6e-39 Score=241.51 Aligned_cols=110 Identities=27% Similarity=0.552 Sum_probs=101.6
Q ss_pred CEEECHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEE
Q ss_conf 1652689999999999717--99861899998479878711320011002101222012468399997877320069899
Q gi|254781064|r 4 IVTMTEAAVYRIKEIVFNS--QGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEI 81 (116)
Q Consensus 4 mi~IT~~A~~~i~~l~~~~--~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~I 81 (116)
||+||++|+++|+++++.. ++++.+|||.|++|||+||+|.|+|. +.+.++|.+++.+|++|+||+.|++||+|++|
T Consensus 1 Mi~iT~~A~~~i~~l~~~~~~~~~~~~lRi~v~~gGCsG~~Y~~~~~-~~~~~~D~v~~~~g~~v~id~~s~~~L~g~~I 79 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALV-AEPKPTDLLTQSQGWTIAIAAEAAELLRGLRV 79 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEEC-SSCCTTCEEECSSSCCEEECGGGHHHHTTCEE
T ss_pred CEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEC-CCCCCCCEEEECCCEEEEEECCHHHHCCCCEE
T ss_conf 98979999999999997503258851899999689768868670262-66676746996299999990606565199899
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 763177445128988887876788521121201
Q gi|254781064|r 82 DFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 (116)
Q Consensus 82 Dy~~~~~~~~F~~~NPna~~~CgCG~SF~~~~~ 114 (116)
||++++++++|+|+||||+++||||+||++++.
T Consensus 80 Dy~~~~~~~~F~~~NPna~~~CGCG~SF~~~~~ 112 (112)
T 1x0g_A 80 DYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112 (112)
T ss_dssp EEEEETTEEEEEEECTTCSEECSSSSEEECCCC
T ss_pred EEECCCCCCCEEEECCCCCCCCCCCCCEEECCC
T ss_conf 883488757369989998830489987206879
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=5.1e-38 Score=233.09 Aligned_cols=110 Identities=35% Similarity=0.651 Sum_probs=102.4
Q ss_pred CCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCE
Q ss_conf 98616526899999999997179986189999847987871132001100210122201246839999787732006989
Q gi|254781064|r 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTE 80 (116)
Q Consensus 1 M~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ 80 (116)
|.-.|+||++|+++|++++++++.++++|||.|+++||+||+|.|.+. +.+.++|.+++.+|++|+||+.|++||+|++
T Consensus 5 ~~~~i~iT~~A~~~i~~ll~~~~~~~~~lri~v~~gGC~G~~y~~~~~-~~~~~~D~~~~~~g~~v~id~~s~~~L~G~~ 83 (114)
T 2apn_A 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFD-EKVNDGDLTIEKSGVQLVIDPMSLQYLIGGT 83 (114)
T ss_dssp SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEEC-CSCCSSCEEEECSSSEEEECHHHHHHHTTCE
T ss_pred CCCCCEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCC-CCCCCCCEEEEECCEEEEECHHHHHHCCCCE
T ss_conf 678828899999999999986899954899998579988528885125-7799997999939969999847851026879
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9763177445128988887876788521121
Q gi|254781064|r 81 IDFKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 (116)
Q Consensus 81 IDy~~~~~~~~F~~~NPna~~~CgCG~SF~~ 111 (116)
|||++++++++|+|+||||+++||||+||++
T Consensus 84 IDy~~~~~~~~F~~~NPna~~~CgCG~SF~v 114 (114)
T 2apn_A 84 VDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp EEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred EEEEECCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 9886168766179979997953289757239
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.96 E-value=1.2e-29 Score=186.14 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=89.1
Q ss_pred CCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEE
Q ss_conf 61652689999999999717998618999984798787113200110021012220124683999978773200698997
Q gi|254781064|r 3 DIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEID 82 (116)
Q Consensus 3 ~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~ID 82 (116)
.||+||++|+++|++++++++.++++|||+|++|||+||+|.|+| +.+.++|++++.+|++|+||+.|++||.|++||
T Consensus 21 ~~i~iT~~A~~~i~~~~~~~~~~~~~LRl~V~~gGCsGf~Y~l~f--d~~~e~D~~~~~~gi~vvID~~S~~~L~GstID 98 (125)
T 2k4z_A 21 MMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF--DDLTEDDIRLTSEGVEIVIAPDYVSLLDQTTLD 98 (125)
T ss_dssp SCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTSCEEEEEEE--ECCCSSSCEEECSSCEEECCTTTHHHHTTEEEE
T ss_pred CEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEE--CCCCCCCEEEEECCCEEEECHHHHHHCCCEEEE
T ss_conf 059989999999999998479988379999946888984856897--877888589981795488562365141986998
Q ss_pred EECCCC-CCEEEEECCCCCC
Q ss_conf 631774-4512898888787
Q gi|254781064|r 83 FKTEKL-YSGFVFHNPNQVS 101 (116)
Q Consensus 83 y~~~~~-~~~F~~~NPna~~ 101 (116)
|+++.+ +++|+|+|||+.+
T Consensus 99 yve~~~g~~gF~f~NPN~pn 118 (125)
T 2k4z_A 99 YVELEPGQFHFIFLNPRDPT 118 (125)
T ss_dssp EEEEETTEEEEEEECSSSCS
T ss_pred EECCCCCCCCEEEECCCCCC
T ss_conf 87278873787997959998
No 7
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm}
Probab=98.20 E-value=9.9e-06 Score=51.95 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCCC-EEECHHHHHHHHHHHHHCCCCCCEEEEEE---------ECCCCC-CCEEEEHHHHCCCCCCCCEECCC-CEEEEE
Q ss_conf 9861-65268999999999971799861899998---------479878-71132001100210122201246-839999
Q gi|254781064|r 1 MSDI-VTMTEAAVYRIKEIVFNSQGKAQGIRISL---------KKGGCA-GLEYMVDLVTDNPVDGDDLIEKD-GVKVWI 68 (116)
Q Consensus 1 M~~m-i~IT~~A~~~i~~l~~~~~~~~~~lRi~v---------~~gGC~-G~~Y~l~~~~~~~~~~D~~~~~~-g~~i~i 68 (116)
|.-| |+||++|+++|++.+. . ...|.+.. .+|+|+ |-.|.|-+++....+-|..++.+ |+.+++
T Consensus 1 m~mM~It~T~~A~e~L~~k~~--~--~~~llL~~dDG~g~Ys~~Gg~C~i~~~f~Li~vd~~d~dYd~~Iesn~G~~iy~ 76 (141)
T 2qgo_A 1 MSLLNIKFTDNAVDYLKRREI--L--DKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYT 76 (141)
T ss_dssp ---CBEEECHHHHHHHHHTTC--T--TSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHC--C--CCEEEEEECCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEECCCCCEEEE
T ss_conf 905999989999999998528--9--942999982898873345876760999899997578888763730699953786
Q ss_pred CHHHHHHHC-CCEEEEECCCCCCEEEEECCC
Q ss_conf 787732006-989976317744512898888
Q gi|254781064|r 69 DSASLLYML-GTEIDFKTEKLYSGFVFHNPN 98 (116)
Q Consensus 69 d~~s~~~L~-g~~IDy~~~~~~~~F~~~NPn 98 (116)
......||. +.+|||.. ..|..++|.
T Consensus 77 ~~~~~~fld~~L~lD~~~----~tl~Lksds 103 (141)
T 2qgo_A 77 SDFDKTMLGPNMVMDYNA----GSLSLSSDE 103 (141)
T ss_dssp CHHHHTTSCSSEEEEEET----TEEEEEETT
T ss_pred CCCCHHHCCCCEEEECCC----CEEEECCCC
T ss_conf 674064407981781688----979874854
No 8
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} SCOP: b.124.1.1
Probab=97.79 E-value=5.5e-05 Score=47.78 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEE--------CCCCC-CCEEEEHHHHCC---CCCCCCEECCCCEEEEE
Q ss_conf 9861652689999999999717998618999984--------79878-711320011002---10122201246839999
Q gi|254781064|r 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLK--------KGGCA-GLEYMVDLVTDN---PVDGDDLIEKDGVKVWI 68 (116)
Q Consensus 1 M~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~--------~gGC~-G~~Y~l~~~~~~---~~~~D~~~~~~g~~i~i 68 (116)
|+=-|+||++|+++|++.+... ...|.+... ++||+ |-.|.|-+++.. +.+.|..++.+-..|++
T Consensus 1 ~~M~It~T~~A~e~L~~~~~~~---~~~L~L~~dDG~g~yS~g~~C~i~~~f~Liiv~~~~~~~~~yd~~iesn~g~i~~ 77 (128)
T 2p2e_A 1 MSLKITVTDDAAKKLQRYTDDS---NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYY 77 (128)
T ss_dssp --CEEEECHHHHHHHHHHHTCT---TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEE
T ss_pred CEEEEEECHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCEEECCCCCCEEE
T ss_conf 9489998999999999862788---8479999828988777776356088989999737767898535561178615897
Q ss_pred CHHHHHHHCC-CEEEEECCCCCCEEEEE
Q ss_conf 7877320069-89976317744512898
Q gi|254781064|r 69 DSASLLYMLG-TEIDFKTEKLYSGFVFH 95 (116)
Q Consensus 69 d~~s~~~L~g-~~IDy~~~~~~~~F~~~ 95 (116)
......|+.+ .+|||.+. ...|..+
T Consensus 78 ~~~~~~ffd~~m~Ld~~~~--~~tl~Lk 103 (128)
T 2p2e_A 78 KGYSKMYMDDNMKISLNTN--NSLLRLT 103 (128)
T ss_dssp CGGGGGGSCSEEEEEECSS--SSCEEEE
T ss_pred CCCCHHHHCCCCEEEECCC--CCEEEEE
T ss_conf 4752323179738998388--7889960
No 9
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.73 E-value=16 Score=17.12 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=15.8
Q ss_pred EEECHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 65268999999999971799861899998479
Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKG 36 (116)
Q Consensus 5 i~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~g 36 (116)
+.|+..-.+.+.+..++++.. .-.+|.++-|
T Consensus 4 lSia~~iv~~v~~~a~~~~~~-rV~~V~l~IG 34 (139)
T 3a43_A 4 WALADAIVRTVLDYAQREGAS-RVKAVRVVLG 34 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCC-EEEEEEEEEC
T ss_conf 999999999999999982995-8999999989
No 10
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.23 E-value=19 Score=16.74 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=16.1
Q ss_pred EEECHHHHHHHHHHHHHCCC-CCCEEEEEE
Q ss_conf 65268999999999971799-861899998
Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQG-KAQGIRISL 33 (116)
Q Consensus 5 i~IT~~A~~~i~~l~~~~~~-~~~~lRi~v 33 (116)
+.|+..-.+.+.+..++++. +...+++.|
T Consensus 6 ~si~~~i~~~v~~~a~~~~~~~V~~V~l~i 35 (119)
T 2kdx_A 6 YSVVSSLIALCEEHAKKNQAHKIERVVVGI 35 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 999999999999999985995899999998
Done!