Query gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 116
No_of_seqs 111 out of 2959
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 11:16:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781064.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s98a_ b.124.1.1 (A:) Fe-S sc 100.0 2.8E-30 2E-34 188.4 10.2 96 5-102 2-97 (97)
2 d1nwba_ b.124.1.1 (A:) Hypothe 100.0 1.4E-29 1E-33 184.5 8.8 95 2-97 7-101 (101)
3 d2p2ea1 b.124.1.1 (A:3-120) Pu 98.0 8.5E-06 6.2E-10 51.0 7.2 90 5-99 3-105 (118)
4 d1ywsa1 g.41.17.1 (A:1-82) Dip 17.9 11 0.00079 16.7 -0.3 13 103-115 25-37 (82)
5 d1sp2a_ g.37.1.1 (A:) Transcri 16.8 19 0.0014 15.3 0.8 11 102-112 4-17 (31)
6 d1wgea1 g.41.17.1 (A:8-77) Del 15.0 14 0.001 16.1 -0.3 12 103-114 26-37 (70)
7 d1a1ia1 g.37.1.1 (A:103-131) Z 14.0 22 0.0016 15.0 0.5 10 103-112 8-17 (29)
8 d1m0da_ c.52.1.17 (A:) Endonuc 14.0 28 0.002 14.5 1.0 52 42-102 35-86 (129)
9 d1twfl_ g.41.9.2 (L:) RBP12 su 13.6 28 0.0021 14.4 1.0 14 103-116 7-21 (46)
10 d1vr3a1 b.82.1.6 (A:1-179) Aci 13.3 38 0.0028 13.6 1.5 35 3-37 65-103 (179)
No 1
>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=2.8e-30 Score=188.37 Aligned_cols=96 Identities=35% Similarity=0.716 Sum_probs=89.0
Q ss_pred EEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEEEE
Q ss_conf 65268999999999971799861899998479878711320011002101222012468399997877320069899763
Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEIDFK 84 (116)
Q Consensus 5 i~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~IDy~ 84 (116)
|+||++|+++|++++++++ ++++|||+|++|||+||+|.|.|. +.+.++|.+++.+|++|+||+.|++||.|++|||+
T Consensus 2 I~iT~~A~~~i~~ll~~~~-~~~~lRi~v~~gGCsG~~Y~l~~~-~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~ 79 (97)
T d1s98a_ 2 ITLSDSAAARVNTFLANRG-KGFGLRLGVRTSGCSGMAYVLEFV-DEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFV 79 (97)
T ss_dssp CEECHHHHHHHHHHHHTTC-CCCEEEEEEEEETTTEEEEEEEEE-SSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred EEECHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCEEEEEEC-CCCCCCCEEEECCCCEEEEEHHHHHHHCCCEEEEE
T ss_conf 8989999999999997389-981799999718977636776005-45899969987289999982799987389999885
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 177445128988887876
Q gi|254781064|r 85 TEKLYSGFVFHNPNQVSA 102 (116)
Q Consensus 85 ~~~~~~~F~~~NPna~~~ 102 (116)
+++++++|+|+||||++.
T Consensus 80 ~~~~~~gF~f~NPNak~e 97 (97)
T d1s98a_ 80 KEGLNEGFKFTNPNVKDE 97 (97)
T ss_dssp CSSTTCEEEEECTTSCCC
T ss_pred ECCCCCCEEEECCCCCCC
T ss_conf 668868469989888898
No 2
>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}
Probab=99.96 E-value=1.4e-29 Score=184.46 Aligned_cols=95 Identities=35% Similarity=0.595 Sum_probs=89.8
Q ss_pred CCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEE
Q ss_conf 86165268999999999971799861899998479878711320011002101222012468399997877320069899
Q gi|254781064|r 2 SDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEI 81 (116)
Q Consensus 2 ~~mi~IT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~I 81 (116)
+.||+||++|+++|++++++++.++++|||+|+++||+||+|.|+|. +.+.++|.+++.+|++|+||+.|++||.|++|
T Consensus 7 ~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~-~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~I 85 (101)
T d1nwba_ 7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFD-DTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL 85 (101)
T ss_dssp CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEE-CSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred CCCEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEC-CCCCCCCEEEECCCEEEEECHHHHHHHCCCEE
T ss_conf 87299889999999999986499886699999679998615887522-45335745885088249998889868589999
Q ss_pred EEECCCCCCEEEEECC
Q ss_conf 7631774451289888
Q gi|254781064|r 82 DFKTEKLYSGFVFHNP 97 (116)
Q Consensus 82 Dy~~~~~~~~F~~~NP 97 (116)
||++++++++|+|+||
T Consensus 86 Dy~~~~~~~~F~f~NP 101 (101)
T d1nwba_ 86 DYVVDFMGGGFTIRNP 101 (101)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEECCCCCEEEEECC
T ss_conf 9865698771899495
No 3
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Probab=98.02 E-value=8.5e-06 Score=50.99 Aligned_cols=90 Identities=20% Similarity=0.325 Sum_probs=63.3
Q ss_pred EEECHHHHHHHHHHHHHCCCCCCEEEEEE--------ECCCCC-CCEEEEHHHHCC---CCCCCCEECCCCEEEEECHHH
Q ss_conf 65268999999999971799861899998--------479878-711320011002---101222012468399997877
Q gi|254781064|r 5 VTMTEAAVYRIKEIVFNSQGKAQGIRISL--------KKGGCA-GLEYMVDLVTDN---PVDGDDLIEKDGVKVWIDSAS 72 (116)
Q Consensus 5 i~IT~~A~~~i~~l~~~~~~~~~~lRi~v--------~~gGC~-G~~Y~l~~~~~~---~~~~D~~~~~~g~~i~id~~s 72 (116)
|+||++|+++|++.+... ...|.+.. +++||+ |-.|.|-+++.. +.+.|..++.+-..|++.+.+
T Consensus 3 ItiT~~A~~~L~~~~~~~---~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~ 79 (118)
T d2p2ea1 3 ITVTDDAAKKLQRYTDDS---NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYS 79 (118)
T ss_dssp EEECHHHHHHHHHHHTCT---TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGG
T ss_pred EEECHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCEEECCCC
T ss_conf 898899999999862877---77799999179886455773025887899998077788964345601787557873531
Q ss_pred HHHHCC-CEEEEECCCCCCEEEEECCCC
Q ss_conf 320069-899763177445128988887
Q gi|254781064|r 73 LLYMLG-TEIDFKTEKLYSGFVFHNPNQ 99 (116)
Q Consensus 73 ~~~L~g-~~IDy~~~~~~~~F~~~NPna 99 (116)
..|+.. .+|||.+. ..-|+.+.|++
T Consensus 80 ~~ffd~~m~ld~~~~--~~~l~LkSd~s 105 (118)
T d2p2ea1 80 KMYMDDNMKISLNTN--NSLLRLTGDNS 105 (118)
T ss_dssp GGGSCSEEEEEECSS--SSCEEEEETTT
T ss_pred HHHCCCCCEEEECCC--CCEEEEECCCC
T ss_conf 111289718988688--78799707975
No 4
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.87 E-value=11 Score=16.73 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 7885211212012
Q gi|254781064|r 103 CGCGQSVEIKRAD 115 (116)
Q Consensus 103 CgCG~SF~~~~~~ 115 (116)
|-||..|.+...+
T Consensus 25 CrCGd~F~it~~d 37 (82)
T d1ywsa1 25 CPCGDRFQIYLDD 37 (82)
T ss_dssp CSSSSCEEEEHHH
T ss_pred CCCCCEEEECHHH
T ss_conf 3569837986999
No 5
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.85 E-value=19 Score=15.33 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.1
Q ss_pred CC---CCCCCCCCC
Q ss_conf 67---885211212
Q gi|254781064|r 102 AC---GCGQSVEIK 112 (116)
Q Consensus 102 ~C---gCG~SF~~~ 112 (116)
.| |||.+|+-.
T Consensus 4 ~C~~~~C~k~F~~~ 17 (31)
T d1sp2a_ 4 MCTWSYCGKRFTRS 17 (31)
T ss_dssp BCCSTTCCCBCSSH
T ss_pred CCCCCCCCCCCCCH
T ss_conf 99099879174875
No 6
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.02 E-value=14 Score=16.09 Aligned_cols=12 Identities=33% Similarity=1.018 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 788521121201
Q gi|254781064|r 103 CGCGQSVEIKRA 114 (116)
Q Consensus 103 CgCG~SF~~~~~ 114 (116)
|-||..|.+..+
T Consensus 26 CpCGd~F~it~~ 37 (70)
T d1wgea1 26 CPCGDNFAITKE 37 (70)
T ss_dssp CSSSSCEEEEHH
T ss_pred CCCCCEEEECHH
T ss_conf 899995898799
No 7
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.03 E-value=22 Score=15.01 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q ss_conf 7885211212
Q gi|254781064|r 103 CGCGQSVEIK 112 (116)
Q Consensus 103 CgCG~SF~~~ 112 (116)
-|||.+|+-.
T Consensus 8 ~gC~k~F~~~ 17 (29)
T d1a1ia1 8 ESCDRRFSRS 17 (29)
T ss_dssp TTCCCEESSH
T ss_pred CCCCCEECCH
T ss_conf 9988578966
No 8
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=13.99 E-value=28 Score=14.45 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=28.2
Q ss_pred EEEEHHHHCCCCCCCCEECCCCEEEEECHHHHHHHCCCEEEEECCCCCCEEEEECCCCCCC
Q ss_conf 1320011002101222012468399997877320069899763177445128988887876
Q gi|254781064|r 42 EYMVDLVTDNPVDGDDLIEKDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSA 102 (116)
Q Consensus 42 ~Y~l~~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~g~~IDy~~~~~~~~F~~~NPna~~~ 102 (116)
.|.-+|. .+++..++.-|.=..-|..-...++... -.+.=+|+|.|||++-+
T Consensus 35 ~YtPDF~----lpngi~iE~KG~f~~~DR~K~~~vk~q~-----P~lDIRfvF~n~~~ki~ 86 (129)
T d1m0da_ 35 TYTPDFL----LPNGIFVETKGLWESDDRKKHLLIREQH-----PELDIRIVFSSSRTKLY 86 (129)
T ss_dssp EECCSEE----CTTSCEEEEESSCCHHHHHHHHHHHHHC-----TTCCEEEEESCTTSBSS
T ss_pred EECCCEE----ECCCEEEEEECCCCHHHHHHHHHHHHHC-----CCCCEEEEEECCCCCCC
T ss_conf 3335479----3586599730446667889999999988-----99868999857766022
No 9
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.65 E-value=28 Score=14.37 Aligned_cols=14 Identities=29% Similarity=0.902 Sum_probs=0.0
Q ss_pred CC-CCCCCCCCCCCC
Q ss_conf 78-852112120129
Q gi|254781064|r 103 CG-CGQSVEIKRADL 116 (116)
Q Consensus 103 Cg-CG~SF~~~~~~~ 116 (116)
|| ||..+.+++-|.
T Consensus 7 CgeCg~~~~l~~~d~ 21 (46)
T d1twfl_ 7 CAECSSKLSLSRTDA 21 (46)
T ss_dssp CSSSCCEECCCTTST
T ss_pred CCCCCCCEEECCCCC
T ss_conf 546898107689996
No 10
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.26 E-value=38 Score=13.65 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCEEECHHH----HHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 616526899----99999999717998618999984798
Q gi|254781064|r 3 DIVTMTEAA----VYRIKEIVFNSQGKAQGIRISLKKGG 37 (116)
Q Consensus 3 ~mi~IT~~A----~~~i~~l~~~~~~~~~~lRi~v~~gG 37 (116)
++|+|++.. .+++++..+.+-.+.-=+|+.+.|.|
T Consensus 65 D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G 103 (179)
T d1vr3a1 65 DIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSG 103 (179)
T ss_dssp EEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHCEECCCCEEEEEEECCE
T ss_conf 799989765889999999874151378847999995759
Done!