RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA
[Candidatus Liberibacter asiaticus str. psy62]
         (116 letters)



>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
           {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 85.0 bits (210), Expect = 1e-18
 Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 5   VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGV 64
           +T++++A  R+   +  ++GK  G+R+ ++  GC+G+ Y+++   D P   D + E  GV
Sbjct: 2   ITLSDSAAARVNTFL-ANRGKGFGLRLGVRTSGCSGMAYVLEF-VDEPTPEDIVFEDKGV 59

Query: 65  KVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVS 101
           KV +D  S+ ++ GT++DF  E L  GF F NPN   
Sbjct: 60  KVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKD 96


>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 101

 Score = 80.2 bits (197), Expect = 4e-17
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 4   IVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDG 63
           I  +T+ AV  IK++   +  +   +RI +  GGC+G +Y +          D + E DG
Sbjct: 9   IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEG-DHVFEYDG 67

Query: 64  VKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNP 97
           VKV ID  S+ Y+ G E+D+  + +  GF   NP
Sbjct: 68  VKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101


>d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain
           {Escherichia coli [TaxId: 562]}
          Length = 176

 Score = 27.8 bits (61), Expect = 0.26
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 33  LKKGGCAGLEYMVDLVTDNPVDGDD---LIEKDGVKVWIDSASLLYMLGTEIDFKT-EKL 88
           + KG C GL+  VDL     +DG     L E+ G+ +W+      Y  GT +   + E +
Sbjct: 48  ISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTK--YSRGTAMSGNSWENV 105

Query: 89  YSGF 92
           +SG+
Sbjct: 106 FSGW 109


>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus
          [TaxId: 274]}
          Length = 312

 Score = 24.0 bits (51), Expect = 3.9
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 9  EAAVYRIKEIVFNSQGKAQGIRI 31
          E  V R++ ++ + +   Q   +
Sbjct: 15 ETLVRRMERVIASGKTPFQDYFL 37


>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 297

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 4/22 (18%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 49  TDNPVDGDDLIEKDGVKVWIDS 70
           +  P + D+L+++ G + +  +
Sbjct: 272 SRGPTEADELMKRVGFQ-YEGT 292


>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
           [TaxId: 562]}
          Length = 336

 Score = 22.6 bits (47), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 88  LYSGFVFHNPNQVS 101
           +YSGF+F  P  + 
Sbjct: 317 IYSGFIFKGPPLIK 330


>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate
           dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
          Length = 290

 Score = 22.7 bits (48), Expect = 9.2
 Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 52  PVDGDDLIEKDGVKVWI 68
           P   D L+  +G   W+
Sbjct: 272 PEASDKLLAANGDA-WV 287


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,235
Number of extensions: 18735
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)