HHsearch alignment for GI: 254781065 and conserved domain: COG1509
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=882.44 Aligned_cols=349 Identities=41% Similarity=0.770 Sum_probs=343.0
Q ss_pred CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 93355224998899864199989999999998534843898899535899744501123269977801381335373100
Q gi|254781065|r 1 MQLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQFIPQKEELNILPEEREDPIGD 80 (352)
Q Consensus 1 ~Qlr~~~i~s~~~L~~~l~Ls~e~~~~~~~~~~~fp~~vtpyyl~LId~~dp~DPi~rQvlP~~~El~~~~~~~~DPl~E 80 (352)
T Consensus 18 ~q~~~-~i~~~~eL~~~~~l~~e~~e~~~~a~~~~~~ritpyy~~Lid~~np~dPirrQviP~~~El~~~~~~~~Dpl~E 96 (369)
T COG1509 18 WQLAN-AIRDPRELLEVLNLDEEELEGLERAAKLFALRITPYYLSLIDWGNPDDPIRRQVIPSEDELEKAPGESEDPLGE 96 (369)
T ss_pred HHHHH-HHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCC
T ss_conf 99988-51789999987579978888899998515555888999753767898617762379889975143324686545
Q ss_pred CCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH
Q ss_conf 00076887145207537999727430000011223301255556789899999999997299747999726981324989
Q gi|254781065|r 81 NNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHK 160 (352)
Q Consensus 81 ~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~ 160 (352)
T Consensus 97 ~~~s~Vpgl~HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~-~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~~ 175 (369)
T COG1509 97 DDSSPVPGLTHRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQG-FNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSDK 175 (369)
T ss_pred CCCCCCCCCEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCHH
T ss_conf 56687887311058848999648664521000134555666566-78899999999997395165177407875636889
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEEC
Q ss_conf 99999999861998128987434356343433999999986259938999336995886999999999999879898232
Q gi|254781065|r 161 RLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQ 240 (352)
Q Consensus 161 ~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQ 240 (352)
T Consensus 176 ~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQ 255 (369)
T COG1509 176 KLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQ 255 (369)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHCCCEEECC
T ss_conf 99999998754896469986246743154440699999872358607998035883546899999999999759565324
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCE
Q ss_conf 79862345788999999999998698242301134576521011869999999999998288865410663178888823
Q gi|254781065|r 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKV 320 (352)
Q Consensus 241 sVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv 320 (352)
T Consensus 256 sVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~SG~~~P~~v~d~pgg~gK~ 335 (369)
T COG1509 256 SVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRTSGYAVPTLVVDIPGGGGKT 335 (369)
T ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 10114667999999999999997488621785167667723351409999999999997577766531578668998765
Q ss_pred EECCHHHEEECCCEEEEECCCCCEEECCCCC
Q ss_conf 5551021231398799981699887189889
Q gi|254781065|r 321 KIDTHNIKKVGNGSYCITDHHNIVHDYPPKS 351 (352)
Q Consensus 321 ~i~~~~~~~~~~~~~~l~~~~g~~~~yp~~~ 351 (352)
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~Yp~~~ 366 (369)
T COG1509 336 PLAPNYRESQSYGKRVLRNFEGKIMTYPEPL 366 (369)
T ss_pred CCCCHHHHHCCCCEEEEECCCCCEEECCCCC
T ss_conf 4671477726787077645888268558987