HHsearch alignment for GI: 254781065 and conserved domain: COG1856

Probab=96.40  E-value=0.12  Score=32.76  Aligned_cols=226  Identities=19%  Similarity=0.203  Sum_probs=121.9

Q ss_pred             EEEEEC-CCCCCHHHCCCCCCEECCCCCCCCCHHHH-HHHHHHHHHCCCEEEEEEECCCCCCCCHH--HHHHHHHHHHCC
Q ss_conf             799972-74300000112233012555567898999-99999997299747999726981324989--999999998619
Q gi|254781065|r   97 ILLKLL-HVCPVYCRFCFRREMVGSQKGTVLSSKDT-EAALAYIQEKSQIWEVIFTGGDPLILSHK--RLQKVLKTLRYI  172 (352)
Q Consensus        97 vLl~~t-~~C~~~CryCfR~~~~~~~~~~~~~~~~~-~~~~~Yi~~~~eI~eVilSGGDPl~l~~~--~L~~ll~~L~~i  172 (352)
T Consensus        12 ~sISVTG~yC~lnC~HCg~~~L~~Mi~v---t~~~l~k~~~el~k--kGy~g~llSGG---m~srg~VPl~kf~d~lK~l   83 (275)
T COG1856          12 ISISVTGAYCSLNCPHCGRHYLEHMIKV---TTKSLLKRCMELEK--KGYEGCLLSGG---MDSRGKVPLWKFKDELKAL   83 (275)
T ss_pred             CEEEEECCCEEECCHHHHHHHHHHHCCC---CHHHHHHHHHHHHH--CCCEEEEEECC---CCCCCCCCHHHHHHHHHHH
T ss_conf             2378863635753817779999875253---25778889999984--57605897578---6879974289999999998


Q ss_pred             C--CCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC----------CHHHHHHHHHHHHCCCEEEEC
Q ss_conf             9--8128987434356343433999999986259938999336995886----------999999999999879898232
Q gi|254781065|r  173 K--HVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF----------SEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       173 ~--hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El----------t~~~~~A~~~L~~~Gv~v~nQ  240 (352)
T Consensus        84 ke~~~l~inaHvGf-------vdE~~~eklk~~~vdvvsL-DfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpH  155 (275)
T COG1856          84 KERTGLLINAHVGF-------VDESDLEKLKEELVDVVSL-DFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPH  155 (275)
T ss_pred             HHHHCEEEEEEEEE-------CCHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEE
T ss_conf             77537489998510-------0178899998716868998-612774899999768863777788999999709425305


Q ss_pred             HH---HHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCC-EEEEEC
Q ss_conf             79---86234578899999999999869824230113457652---101186999999999999828886541-066317
Q gi|254781065|r  241 SV---LLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGT---SHFRLTIEEGQKIVASLKEKISGLCQP-FYILDL  313 (352)
Q Consensus       241 sV---LLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~---~hf~v~~~~~~~i~~~l~~~lsG~~~P-~~v~d~  313 (352)
T Consensus       156 itiGL~~gki~~e~kaIdiL~~----~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~---pv~iGCmr  228 (275)
T COG1856         156 ITIGLDFGKIHGEFKAIDILVN----YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN---PVSIGCMR  228 (275)
T ss_pred             EEEEECCCCCCCHHHHHHHHHC----CCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHCCC---CEEEEECC
T ss_conf             9997316852333878899860----7997399999813885010577976989999999999985899---74674147


Q ss_pred             CCCCCCEEECCHHHEEECCCEEEEECCCCCEEECC
Q ss_conf             88888235551021231398799981699887189
Q gi|254781065|r  314 PGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHDYP  348 (352)
Q Consensus       314 p~~~GKv~i~~~~~~~~~~~~~~l~~~~g~~~~yp  348 (352)
T Consensus       229 P~Ge~rvk~d~~av~-~gVd--~It~P~~~t~e~a  260 (275)
T COG1856         229 PRGEWRVKLDKEAVL-AGVD--RITFPPRGTIEYA  260 (275)
T ss_pred             CCCHHHHHHHHHHHH-CCCC--EEECCCCCCEEHH
T ss_conf             675367878888887-1885--0445985402233