HHsearch alignment for GI: 254781065 and conserved domain: PRK08629
>PRK08629 coproporphyrinogen III oxidase; Provisional.
Probab=97.07 E-value=0.04 Score=36.11 Aligned_cols=218 Identities=13% Similarity=0.171 Sum_probs=133.0
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHH-HHH---HHHHHH-CCCEEEE
Q ss_conf 35373100000768871452075379997274300000112233012555567898999-999---999972-9974799
Q gi|254781065|r 73 EREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDT-EAA---LAYIQE-KSQIWEV 147 (352)
Q Consensus 73 ~~~DPl~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~-~~~---~~Yi~~-~~eI~eV 147 (352)
T Consensus 25 ~~~~~~~~~-~~~~~~~~~~~---~LYiHIPFC~~~C~YC~F~~~~~~~~---~-~~~Y~~aL~kEi~~~~~~~~~i~ti 96 (424)
T PRK08629 25 LRLDTLSAP-MMPAPVEGKKY---MLYAHVPFCHTLCPYCSFHRFLFKED---K-ARAYFISLRKEMEMVKELGYDFESM 96 (424)
T ss_pred CCCCCCCCC-CCCCCCCCCEE---EEEEECCCCCCCCCCCCCCCCCCCCC---H-HHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 786534556-68999999856---89989054079888998958268824---1-9999999999999988539983769
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCC-------
Q ss_conf 9726981324989999999998619981289874343563434339999999862599389993369958869-------
Q gi|254781065|r 148 IFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFS------- 220 (352)
Q Consensus 148 ilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt------- 220 (352)
T Consensus 97 y~GGGTPs~L~~-~l~~~l~~~~~~f~~~Ei-----TiE~nP~~~~~~~l~~l~~~vNRiSlGVQsf~~~~L~~lgR~h~ 170 (424)
T PRK08629 97 YVGGGTTTILED-ELAKTLELAKKLFSIKEV-----SCESDPNHLDPPGLKQLKGLIDRLSIGVQSFNDDILKMVDRYEK 170 (424)
T ss_pred EECCCHHHCCHH-HHHHHHHHHHHHCCCCEE-----EEECCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCC
T ss_conf 977971225799-999999999864898249-----99538686899999999864251666236699889998099998
Q ss_pred -HHHHHHHHHHHHCCCEEEE-CHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-----CCCCHHH-HH
Q ss_conf -9999999999987989823-279862345-7889999999999986982423011345765210-----1186999-99
Q gi|254781065|r 221 -EEAIAAISRLANAGIILLS-QSVLLKGIN-DDPEILANLMRTFVELRIKPYYLHHPDLAAGTSH-----FRLTIEE-GQ 291 (352)
Q Consensus 221 -~~~~~A~~~L~~~Gv~v~n-QsVLLkgVN-D~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~h-----f~v~~~~-~~ 291 (352)
T Consensus 171 ~~~~~~~~~~~~~a~~~f~niniDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~~~~~~~l~~p~~d~~~ 250 (424)
T PRK08629 171 FGSGQETFEKIMAAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNAR 250 (424)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCHHHCCCCCCCCHHHHH
T ss_conf 54699999999997634462535323279999999999999999817989898636622647213423789989879999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999828886
Q gi|254781065|r 292 KIVASLKEKISGL 304 (352)
Q Consensus 292 ~i~~~l~~~lsG~ 304 (352)
T Consensus 251 ~~~~i~~~~~~~y 263 (424)
T PRK08629 251 QYRQILNSLFGQY 263 (424)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999972798