HHsearch alignment for GI: 254781065 and conserved domain: PRK13762
>PRK13762 tRNA-modifying enzyme; Provisional.
Probab=95.93 E-value=0.048 Score=35.53 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=37.9
Q ss_pred HHHHHHHHHHCCCEEEECHHHHHCCCCC-HHHHHHHHHHHHHCCCEE-EEEECCCCCCCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 9999999998798982327986234578-899999999999869824-230113457652101186-9999999999998
Q gi|254781065|r 223 AIAAISRLANAGIILLSQSVLLKGINDD-PEILANLMRTFVELRIKP-YYLHHPDLAAGTSHFRLT-IEEGQKIVASLKE 299 (352)
Q Consensus 223 ~~~A~~~L~~~Gv~v~nQsVLLkgVND~-~~~l~~L~~~L~~~gV~P-YYl~~~d~v~G~~hf~v~-~~~~~~i~~~l~~ 299 (352)
T Consensus 209 ~~~sL~~L~~~~~RTV~R~TLVkg~Nm~~~~~yA~Li~~~~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~Fa~~l~~ 288 (321)
T PRK13762 209 ILETLELLPSKKTRTVIRITLVKGLNMTDPEGYAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAE 288 (321)
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 99999975437987599998765657679899999998549987987117984267776772239988999999999998
Q ss_pred HCCCCCC
Q ss_conf 2888654
Q gi|254781065|r 300 KISGLCQ 306 (352)
Q Consensus 300 ~lsG~~~ 306 (352)
T Consensus 289 ~~-~Y~i 294 (321)
T PRK13762 289 HL-GYKI 294 (321)
T ss_pred HC-CCEE
T ss_conf 63-9867