HHsearch alignment for GI: 254781065 and conserved domain: TIGR00048
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=97.61 E-value=0.0017 Score=45.71 Aligned_cols=198 Identities=23% Similarity=0.367 Sum_probs=131.5
Q ss_pred CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHH-------HCCC-EEEEEEEC-CCCCCCC
Q ss_conf 7145207537999727430000011223301255556789899999999997-------2997-47999726-9813249
Q gi|254781065|r 88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQ-------EKSQ-IWEVIFTG-GDPLILS 158 (352)
Q Consensus 88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~-------~~~e-I~eVilSG-GDPl~l~ 158 (352)
T Consensus 114 ailerek~TvCVSsQvGC~~~C~FC~T~~--gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEPL~-- 189 (378)
T TIGR00048 114 AILEREKATVCVSSQVGCALGCTFCATAK--GGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEPLL-- 189 (378)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC--
T ss_conf 77652276268710235422551033457--87521451033899999999983455777665404788746787101--
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHH--CCCCEEEEECCCCHHH-----CC--------HHH
Q ss_conf 89999999998619981289874343563434339999999862--5993899933699588-----69--------999
Q gi|254781065|r 159 HKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE--AGKPVYIAIHANHPYE-----FS--------EEA 223 (352)
Q Consensus 159 ~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~--~~~~~~iv~H~NHp~E-----lt--------~~~ 223 (352)
T Consensus 190 --Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~~ki-~~Lad~~l~V~lAiSLHA--pn~~~R~~l~P~nk~Y~ie~l 264 (378)
T TIGR00048 190 --NLNEVVKALEILNDDVGLGISKRRITISTSGVVPKI-DELADKMLQVALAISLHA--PNDELRSSLMPINKKYNIETL 264 (378)
T ss_pred --CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH-HHHCCCCCCEEEEEEECC--CCCHHHHHHCCCCCCCCHHHH
T ss_conf --179999999987422203656733788735714588-885132110334455328--871124440650014786799
Q ss_pred HHHHHHHH-HCCC---EEEECHHHHHCCCCCHHHHHHHHHHHHH----CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999-8798---9823279862345788999999999998----69824230113457652101186999999999
Q gi|254781065|r 224 IAAISRLA-NAGI---ILLSQSVLLKGINDDPEILANLMRTFVE----LRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVA 295 (352)
Q Consensus 224 ~~A~~~L~-~~Gv---~v~nQsVLLkgVND~~~~l~~L~~~L~~----~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~ 295 (352)
T Consensus 265 l~~vr~Y~~~~~~n~GRV~fEY~Ll~~vND~~~HA~~La~lL~g~~ckvNLIP~-----NP~~e~~Y~R~s~~~i~~F~~ 339 (378)
T TIGR00048 265 LAAVRRYLEKTGRNQGRVTFEYVLLDGVNDQVEHAEELAELLKGVKCKVNLIPF-----NPFPEADYERPSNEQIDRFAK 339 (378)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-----CCCCCCCCCCCCHHHHHHHHH
T ss_conf 999987586427677726887420024688588999999985699850401213-----787988888880889999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781065|r 296 SLKE 299 (352)
Q Consensus 296 ~l~~ 299 (352)
T Consensus 340 ~L~s 343 (378)
T TIGR00048 340 VLKS 343 (378)
T ss_pred HHHH
T ss_conf 8620