HHsearch alignment for GI: 254781065 and conserved domain: TIGR00089
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=98.75 E-value=1.5e-07 Score=74.41 Aligned_cols=207 Identities=17% Similarity=0.288 Sum_probs=143.9
Q ss_pred CCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHH--HCCCEEEEEEEC-------CCCCCCCHHH-HH
Q ss_conf 7537999727430000011223301255556789899999999997--299747999726-------9813249899-99
Q gi|254781065|r 94 PDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQ--EKSQIWEVIFTG-------GDPLILSHKR-LQ 163 (352)
Q Consensus 94 ~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~--~~~eI~eVilSG-------GDPl~l~~~~-L~ 163 (352)
T Consensus 152 ~~~a~~~I~~GC~~~CtyCivP~~RG~~r-S----r~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~-~~~~La 225 (455)
T TIGR00089 152 KTRAFVKIQEGCDKFCTYCIVPYTRGRER-S----RPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEG-KTNSLA 225 (455)
T ss_pred CEEEEEEECCCCCCCCCEEEECCCCCEEC-C----CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC-CCCCHH
T ss_conf 53899984026586977688134266001-3----58899999999998469809999988525624778888-976479
Q ss_pred HHHHHHHC-CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHC--CC---CEEEEECCCCHHHC--------CHHHHHHHHH
Q ss_conf 99999861-99812898743435634343399999998625--99---38999336995886--------9999999999
Q gi|254781065|r 164 KVLKTLRY-IKHVQILRFHSRVPIVDPQRINPELIQCLKEA--GK---PVYIAIHANHPYEF--------SEEAIAAISR 229 (352)
Q Consensus 164 ~ll~~L~~-i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~--~~---~~~iv~H~NHp~El--------t~~~~~A~~~ 229 (352)
T Consensus 226 ~LL~~l~~ki~G~~RIR~~~----~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k 301 (455)
T TIGR00089 226 DLLRELSKKIDGIERIRFTS----SHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEK 301 (455)
T ss_pred HHHHHHHHHCCCCEEEEEEC----CCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999840059702688604----67032687899999850788535202212661886999703789888999999999
Q ss_pred HHHCC-CEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC----CCHHHH---HHHHHHHHHHC
Q ss_conf 99879-89823279862345788999999999998698242301134576521011----869999---99999999828
Q gi|254781065|r 230 LANAG-IILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFR----LTIEEG---QKIVASLKEKI 301 (352)
Q Consensus 230 L~~~G-v~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~----v~~~~~---~~i~~~l~~~l 301 (352)
T Consensus 302 ~r~~~P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~vP~~vk~~R~~~L~~l~~~i 381 (455)
T TIGR00089 302 LRAKVPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEI 381 (455)
T ss_pred HHHHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99847881775026882899988999999999852384434312057888874635678889889999999999999999
Q ss_pred CCCCCCE-EE
Q ss_conf 8865410-66
Q gi|254781065|r 302 SGLCQPF-YI 310 (352)
Q Consensus 302 sG~~~P~-~v 310 (352)
T Consensus 382 ~~~~n~~~~~ 391 (455)
T TIGR00089 382 SLEKNKRKYV 391 (455)
T ss_pred HHHHHHHHHC
T ss_conf 9999987504