HHsearch alignment for GI: 254781065 and conserved domain: TIGR00539

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=95.79  E-value=0.23  Score=30.79  Aligned_cols=203  Identities=18%  Similarity=0.287  Sum_probs=129.8

Q ss_pred             EECCCCCCHHHCCCC-CCEECCCCCCCCCHHHHH--------HHHHHHH---HCCCEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             972743000001122-330125555678989999--------9999997---2997479997269813249899999999
Q gi|254781065|r  100 KLLHVCPVYCRFCFR-REMVGSQKGTVLSSKDTE--------AALAYIQ---EKSQIWEVIFTGGDPLILSHKRLQKVLK  167 (352)
Q Consensus       100 ~~t~~C~~~CryCfR-~~~~~~~~~~~~~~~~~~--------~~~~Yi~---~~~eI~eVilSGGDPl~l~~~~L~~ll~  167 (352)
T Consensus         5 IHIPfCe~kC~YCdFNsy~~ksd----~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~   80 (371)
T TIGR00539         5 IHIPFCEQKCGYCDFNSYAQKSD----IPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE   80 (371)
T ss_pred             EECCHHCCCCCCCCCCCHHHHCC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             55602237588865332455427----85679999999999999986044323676556885688741468999999999


Q ss_pred             HHHC-CC-CCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCE
Q ss_conf             9861-99-81289874343563434339999999862599-38999336995886--------99999999999987989
Q gi|254781065|r  168 TLRY-IK-HVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGII  236 (352)
Q Consensus       168 ~L~~-i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~  236 (352)
T Consensus        81 ~I~~~~~P~sd~~Eit~e---ANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~e  157 (371)
T TIGR00539        81 EIKKQLKPLSDDIEITVE---ANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLE  157 (371)
T ss_pred             HHHHHCCCCCCCCCEEEC---CCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             987521743102111110---78212569886367655702332133454155788864211333466799999871752


Q ss_pred             EEECHHHHHCCCCCHHHHHHHHHHHHHCCC----------EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             823279862345788999999999998698----------2423011345765210118699999999999982888654
Q gi|254781065|r  237 LLSQSVLLKGINDDPEILANLMRTFVELRI----------KPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQ  306 (352)
Q Consensus       237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV----------~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~  306 (352)
T Consensus       158 nislDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhl-P~~~~~a~~~e~v~~~le~~g~  236 (371)
T TIGR00539       158 NISLDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHL-PDDDALAEIYEVVRELLEAFGY  236 (371)
T ss_pred             CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCC
T ss_conf             000554407861348999999865531784511233234223304542688887894-6703456799999999985582


Q ss_pred             CEEE
Q ss_conf             1066
Q gi|254781065|r  307 PFYI  310 (352)
Q Consensus       307 P~~v  310 (352)
T Consensus       237 ~QYE  240 (371)
T TIGR00539       237 KQYE  240 (371)
T ss_pred             CHHH
T ss_conf             2221