HHsearch alignment for GI: 254781065 and conserved domain: TIGR00539
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=95.79 E-value=0.23 Score=30.79 Aligned_cols=203 Identities=18% Similarity=0.287 Sum_probs=129.8
Q ss_pred EECCCCCCHHHCCCC-CCEECCCCCCCCCHHHHH--------HHHHHHH---HCCCEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 972743000001122-330125555678989999--------9999997---2997479997269813249899999999
Q gi|254781065|r 100 KLLHVCPVYCRFCFR-REMVGSQKGTVLSSKDTE--------AALAYIQ---EKSQIWEVIFTGGDPLILSHKRLQKVLK 167 (352)
Q Consensus 100 ~~t~~C~~~CryCfR-~~~~~~~~~~~~~~~~~~--------~~~~Yi~---~~~eI~eVilSGGDPl~l~~~~L~~ll~ 167 (352)
T Consensus 5 IHIPfCe~kC~YCdFNsy~~ksd----~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~ 80 (371)
T TIGR00539 5 IHIPFCEQKCGYCDFNSYAQKSD----IPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE 80 (371)
T ss_pred EECCHHCCCCCCCCCCCHHHHCC----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 55602237588865332455427----85679999999999999986044323676556885688741468999999999
Q ss_pred HHHC-CC-CCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCE
Q ss_conf 9861-99-81289874343563434339999999862599-38999336995886--------99999999999987989
Q gi|254781065|r 168 TLRY-IK-HVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGII 236 (352)
Q Consensus 168 ~L~~-i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~ 236 (352)
T Consensus 81 ~I~~~~~P~sd~~Eit~e---ANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~e 157 (371)
T TIGR00539 81 EIKKQLKPLSDDIEITVE---ANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLE 157 (371)
T ss_pred HHHHHCCCCCCCCCEEEC---CCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 987521743102111110---78212569886367655702332133454155788864211333466799999871752
Q ss_pred EEECHHHHHCCCCCHHHHHHHHHHHHHCCC----------EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 823279862345788999999999998698----------2423011345765210118699999999999982888654
Q gi|254781065|r 237 LLSQSVLLKGINDDPEILANLMRTFVELRI----------KPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQ 306 (352)
Q Consensus 237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV----------~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~ 306 (352)
T Consensus 158 nislDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhl-P~~~~~a~~~e~v~~~le~~g~ 236 (371)
T TIGR00539 158 NISLDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHL-PDDDALAEIYEVVRELLEAFGY 236 (371)
T ss_pred CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCC
T ss_conf 000554407861348999999865531784511233234223304542688887894-6703456799999999985582
Q ss_pred CEEE
Q ss_conf 1066
Q gi|254781065|r 307 PFYI 310 (352)
Q Consensus 307 P~~v 310 (352)
T Consensus 237 ~QYE 240 (371)
T TIGR00539 237 KQYE 240 (371)
T ss_pred CHHH
T ss_conf 2221