HHsearch alignment for GI: 254781065 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=97.09 E-value=0.0034 Score=43.63 Aligned_cols=161 Identities=19% Similarity=0.289 Sum_probs=97.8
Q ss_pred CCCCCCCEEECCCEEEEEECCCCCCHHHCCCC------CCEECCCCCCCCCHHHHHH-----HHHHHHHCCCEEEEEEEC
Q ss_conf 07688714520753799972743000001122------3301255556789899999-----999997299747999726
Q gi|254781065|r 83 HSPLKGIVHRYPDRILLKLLHVCPVYCRFCFR------REMVGSQKGTVLSSKDTEA-----ALAYIQEKSQIWEVIFTG 151 (352)
Q Consensus 83 ~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR------~~~~~~~~~~~~~~~~~~~-----~~~Yi~~~~eI~eVilSG 151 (352)
T Consensus 65 HTkta~~~~~~~~~~~~~~~~~~c~~Cg~C~~~Cp~~Al~~~G~----~~tV~ev~~~~~~D~~fY~~SGGGvT---lSG 137 (305)
T TIGR02494 65 HTKTARLVERLDGRNIISIRREKCTGCGKCTEACPSGALEIVGK----EMTVEEVMRVVLRDSIFYRNSGGGVT---LSG 137 (305)
T ss_pred CCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCHHHHEECC----CCCHHHHHHHHHHHHHHHHHCCCEEE---ECC
T ss_conf 33206778764178601000017741110110384006420245----14889999999865566651399067---348
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEE--EEEHH-HCCH--HHHHHH-HHCCCCEEEEECCCCHHHC----CH
Q ss_conf 9813249899999999986199812898743435--63434-3399--999998-6259938999336995886----99
Q gi|254781065|r 152 GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP--IVDPQ-RINP--ELIQCL-KEAGKPVYIAIHANHPYEF----SE 221 (352)
Q Consensus 152 GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~p--v~~P~-Rit~--~L~~~l-~~~~~~~~iv~H~NHp~El----t~ 221 (352)
T Consensus 138 GEPl~Q~e-F~~~LL~~c~~~g------ihTAvET~gft~~~~~~~~~~~~DLfL~Di-K~~D~----~~H~~~tG~~N~ 205 (305)
T TIGR02494 138 GEPLLQPE-FALALLKACRERG------IHTAVETSGFTPWETIEKVLPYVDLFLYDI-KHLDD----ERHKEVTGVDNE 205 (305)
T ss_pred CCCCCCHH-HHHHHHHHHHHCC------CCEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHCCC----HHHHHHCCCCHH
T ss_conf 71140158-9999999997589------946760556888899998888776998726-41180----120553389837
Q ss_pred HHHHHHHHHHHCC----CEEEECHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999879----8982327986234578899999999999
Q gi|254781065|r 222 EAIAAISRLANAG----IILLSQSVLLKGINDDPEILANLMRTFV 262 (352)
Q Consensus 222 ~~~~A~~~L~~~G----v~v~nQsVLLkgVND~~~~l~~L~~~L~ 262 (352)
T Consensus 206 ~IL~NL~~L~~~~~~GG~~v~iR~PvIpG~Nds~~~i~a~~~f~~ 250 (305)
T TIGR02494 206 LILENLEALLAAGKDGGKNVVIRIPVIPGFNDSEENIEAIAEFLR 250 (305)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 899999999971788995589987204898989899999999999