HHsearch alignment for GI: 254781065 and conserved domain: TIGR03279
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=94.44 E-value=0.1 Score=33.24 Aligned_cols=91 Identities=21% Similarity=0.344 Sum_probs=53.4
Q ss_pred CEEEEECCCCHHH--------CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHH---HHHHHHH-------HHHCCCE
Q ss_conf 3899933699588--------69999999999998798982327986234578899---9999999-------9986982
Q gi|254781065|r 206 PVYIAIHANHPYE--------FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI---LANLMRT-------FVELRIK 267 (352)
Q Consensus 206 ~~~iv~H~NHp~E--------lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~---l~~L~~~-------L~~~gV~ 267 (352)
T Consensus 141 Pl~ISVHaT~pelR~~mL~n~~ag~il~~l~~L~~~gI~~h~QIVLCPGiNDG~~L~rTi~DL~~~~~~~~P~v~SvavV 220 (433)
T TIGR03279 141 PLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVV 220 (433)
T ss_pred CEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 63899863998999998769957899999999997698798479987996766999989999998612468842577788
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 423011345765210118699999999999
Q gi|254781065|r 268 PYYLHHPDLAAGTSHFRLTIEEGQKIVASL 297 (352)
Q Consensus 268 PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l 297 (352)
T Consensus 221 PVGlTk~R~~l~~l~-~~~~e~A~~vi~~v 249 (433)
T TIGR03279 221 PVGLTRFRPEEDELT-PVTPECARRVIAQV 249 (433)
T ss_pred ECCCCCCCCCCCCCC-CCCHHHHHHHHHHH
T ss_conf 324213578999872-18999999999999