HHsearch alignment for GI: 254781065 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.55  E-value=7.6e-06  Score=62.39  Aligned_cols=184  Identities=18%  Similarity=0.261  Sum_probs=127.5

Q ss_pred             EEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             799972743000001122330125555678989999999999729-9747999726981324989999999998619981
Q gi|254781065|r   97 ILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEK-SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV  175 (352)
Q Consensus        97 vLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~-~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv  175 (352)
T Consensus       198 ~~i~TSRGCP~~C~FC~~p~~~~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~-DD~Ft~~~~r~~eic~~i~~l~-i  275 (472)
T TIGR03471       198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFD-DDTFTDDKPRAEEIARKLGPLG-V  275 (472)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHCC-C
T ss_conf             4764179988779687882102688662159999999999999866897589994-7766789999999999998769-8


Q ss_pred             EEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH--C-------C-HHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             2898743435634343399999998625993899933699588--6-------9-9999999999987989823279862
Q gi|254781065|r  176 QILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE--F-------S-EEAIAAISRLANAGIILLSQSVLLK  245 (352)
Q Consensus       176 ~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E--l-------t-~~~~~A~~~L~~~Gv~v~nQsVLLk  245 (352)
T Consensus       276 ~-W~~~~Rv------~~d~E~l~~mk~AGc-~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIi-G  346 (472)
T TIGR03471       276 T-WSCNARA------NVDYETLKVMKENGL-RLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFIL-G  346 (472)
T ss_pred             E-EEEEEEC------CCCHHHHHHHHHHCC-EEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEE-C
T ss_conf             2-7876303------489999999998398-48998037589999998538998999999999887579879999987-7


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             3457889999999999986982423011345765210118699999
Q gi|254781065|r  246 GINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQ  291 (352)
Q Consensus       246 gVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~  291 (352)
T Consensus       347 ~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~  392 (472)
T TIGR03471       347 LPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW  392 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf             9999889999999999975989089987258899699999998398