HHsearch alignment for GI: 254781065 and conserved domain: TIGR03550
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.44 E-value=0.005 Score=42.46 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=113.5
Q ss_pred EEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-
Q ss_conf 3799972743000001122330125555678989999999999729974799972698132498999999999861998-
Q gi|254781065|r 96 RILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKH- 174 (352)
Q Consensus 96 rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~h- 174 (352)
T Consensus 5 N~~In~TNiC~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~-~~G~tEv~i~gG~~---P~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGA-AAGCTEALFTFGEK---PEERYPEAREWLAEMGYD 80 (322)
T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCCCC---HHHHHHHHHHHHHHHCCC
T ss_conf 21568872031769678851689998877479999999999999-77987999648868---003499999999984886
Q ss_pred -----CEEE-EE----ECCEEEEEHHHCCHHHHHHHHHCCC------------CEEEEECCCCHHHCCHHHHHHHHHHHH
Q ss_conf -----1289-87----4343563434339999999862599------------389993369958869999999999998
Q gi|254781065|r 175 -----VQIL-RF----HSRVPIVDPQRINPELIQCLKEAGK------------PVYIAIHANHPYEFSEEAIAAISRLAN 232 (352)
Q Consensus 175 -----v~~I-Ri----~TR~pv~~P~Rit~~L~~~l~~~~~------------~~~iv~H~NHp~Elt~~~~~A~~~L~~ 232 (352)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~~~e~~ae~l~~~vr~~~~P~K~~~~~l~i~~~Ah~ 160 (322)
T TIGR03550 81 STLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGR 160 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 17899999999999863356544767688999998763186266678888875322235677999887999999999998
Q ss_pred CCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC-----C---EEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 798982327986234578899999999999869-----8---24230113-45765210118699999999999982888
Q gi|254781065|r 233 AGIILLSQSVLLKGINDDPEILANLMRTFVELR-----I---KPYYLHHP-DLAAGTSHFRLTIEEGQKIVASLKEKISG 303 (352)
Q Consensus 233 ~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g-----V---~PYYl~~~-d~v~G~~hf~v~~~~~~~i~~~l~~~lsG 303 (352)
T Consensus 161 lGi~tt--aTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~-F~p~~~~~~~~~~~~s~~e~Lr~iAvaRl~Ldn 237 (322)
T TIGR03550 161 LKIPFT--TGILIGIGETREERAESLLAIRELHERYGHIQEVIVQN-FRAKPGTPMENHPEPSLEEMLRTVAVARLILPP 237 (322)
T ss_pred CCCCEE--EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 599615--12342046999999999999998786529657996267-668998645569998999999999999997599
Q ss_pred C
Q ss_conf 6
Q gi|254781065|r 304 L 304 (352)
Q Consensus 304 ~ 304 (352)
T Consensus 238 ~ 238 (322)
T TIGR03550 238 D 238 (322)
T ss_pred C
T ss_conf 9