HHsearch alignment for GI: 254781065 and conserved domain: TIGR03551
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.58 E-value=0.00094 Score=47.60 Aligned_cols=207 Identities=21% Similarity=0.228 Sum_probs=120.1
Q ss_pred ECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20753799972743000001122330125555678989999999999729974799972698132498999999999861
Q gi|254781065|r 92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352)
Q Consensus 92 kY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352)
T Consensus 36 tf~~n~~In~TNiC~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~-~G~~Ei~~~gG~~Pel~~~~y~e~~r~ik~ 114 (343)
T TIGR03551 36 TYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK-AGATEVCIQGGIHPDLDGDFYLDILRAVKE 114 (343)
T ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 9965006255268747897677866899986600799999999999997-699689982586878888899999999987
Q ss_pred -CCCCEEEEEECCEEEEEH--HH----CCHHHHHHHHHCCCCEE----------EEECCCCHHHCCHHH-HHHHHHHHHC
Q ss_conf -998128987434356343--43----39999999862599389----------993369958869999-9999999987
Q gi|254781065|r 172 -IKHVQILRFHSRVPIVDP--QR----INPELIQCLKEAGKPVY----------IAIHANHPYEFSEEA-IAAISRLANA 233 (352)
Q Consensus 172 -i~hv~~IRi~TR~pv~~P--~R----it~~L~~~l~~~~~~~~----------iv~H~NHp~Elt~~~-~~A~~~L~~~ 233 (352)
T Consensus 115 ~~p~~---~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~l 191 (343)
T TIGR03551 115 EVPGM---HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL 191 (343)
T ss_pred HCCCC---EEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 48830---102278999999998659999999999997587767886513214012414696989999999999999985
Q ss_pred CCEEEECHHHHHCCCCCHHHHHHHHHHHHHC-----CCEEE--EEECCCCCC----CCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9898232798623457889999999999986-----98242--301134576----521011869999999999998288
Q gi|254781065|r 234 GIILLSQSVLLKGINDDPEILANLMRTFVEL-----RIKPY--YLHHPDLAA----GTSHFRLTIEEGQKIVASLKEKIS 302 (352)
Q Consensus 234 Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~-----gV~PY--Yl~~~d~v~----G~~hf~v~~~~~~~i~~~l~~~ls 302 (352)
T Consensus 192 Gi~t--tatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~~~~~~~e~l~~iAvaRl~l~ 269 (343)
T TIGR03551 192 GIPT--TATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLH 269 (343)
T ss_pred CCCC--CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9972--02234278899999999999999862013882699813656678804441566789857999999999999704
Q ss_pred CC
Q ss_conf 86
Q gi|254781065|r 303 GL 304 (352)
Q Consensus 303 G~ 304 (352)
T Consensus 270 ~~ 271 (343)
T TIGR03551 270 GL 271 (343)
T ss_pred CC
T ss_conf 77