HHsearch alignment for GI: 254781065 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.87  E-value=3.5e-07  Score=71.85  Aligned_cols=181  Identities=23%  Similarity=0.378  Sum_probs=127.8

Q ss_pred             EEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             3799972743000001122330125555678989999999999729----974799972698132498999999999861
Q gi|254781065|r   96 RILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEK----SQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus        96 rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~----~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
T Consensus         2 ~~~~~~sRGC~~~C~fC~~~~~~~~--~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (216)
T smart00729        2 LALYIITRGCPRRCTFCSFPSARGK--LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIRE   79 (216)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             7999998781984842981758896--45759999999999999708976530011002468988899999999999998


Q ss_pred             CCCC---EEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH--C--------CHHHHHHHHHHHHCC-CEE
Q ss_conf             9981---2898743435634343399999998625993899933699588--6--------999999999999879-898
Q gi|254781065|r  172 IKHV---QILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE--F--------SEEAIAAISRLANAG-IIL  237 (352)
Q Consensus       172 i~hv---~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E--l--------t~~~~~A~~~L~~~G-v~v  237 (352)
T Consensus        80 ~~~~~~~~~~~~~~~-----~~~~~~e~l~~l~~~g~~-~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~  153 (216)
T smart00729       80 ILGLADDVEITIETR-----PGTLTEELLEALKEAGVN-RVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKV  153 (216)
T ss_pred             HCCCCCCEEEEEECC-----CCCCCHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             514356269999706-----021589999999984998-66667355078999871799999999999999998589368


Q ss_pred             EECHHHHHCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             2327986234-578899999999999869824230113457652101186
Q gi|254781065|r  238 LSQSVLLKGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT  286 (352)
Q Consensus       238 ~nQsVLLkgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~  286 (352)
T Consensus       154 ~~~--~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~  201 (216)
T smart00729      154 STD--LIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY  201 (216)
T ss_pred             EEE--EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCC
T ss_conf             775--786799999999999999999469198998748756998466501