HHsearch alignment for GI: 254781065 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.87 E-value=3.5e-07 Score=71.85 Aligned_cols=181 Identities=23% Similarity=0.378 Sum_probs=127.8
Q ss_pred EEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 3799972743000001122330125555678989999999999729----974799972698132498999999999861
Q gi|254781065|r 96 RILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEK----SQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352)
Q Consensus 96 rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~----~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352)
T Consensus 2 ~~~~~~sRGC~~~C~fC~~~~~~~~--~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGK--LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7999998781984842981758896--45759999999999999708976530011002468988899999999999998
Q ss_pred CCCC---EEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH--C--------CHHHHHHHHHHHHCC-CEE
Q ss_conf 9981---2898743435634343399999998625993899933699588--6--------999999999999879-898
Q gi|254781065|r 172 IKHV---QILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE--F--------SEEAIAAISRLANAG-IIL 237 (352)
Q Consensus 172 i~hv---~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E--l--------t~~~~~A~~~L~~~G-v~v 237 (352)
T Consensus 80 ~~~~~~~~~~~~~~~-----~~~~~~e~l~~l~~~g~~-~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~ 153 (216)
T smart00729 80 ILGLADDVEITIETR-----PGTLTEELLEALKEAGVN-RVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKV 153 (216)
T ss_pred HCCCCCCEEEEEECC-----CCCCCHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 514356269999706-----021589999999984998-66667355078999871799999999999999998589368
Q ss_pred EECHHHHHCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 2327986234-578899999999999869824230113457652101186
Q gi|254781065|r 238 LSQSVLLKGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT 286 (352)
Q Consensus 238 ~nQsVLLkgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~ 286 (352)
T Consensus 154 ~~~--~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~ 201 (216)
T smart00729 154 STD--LIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred EEE--EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCC
T ss_conf 775--786799999999999999999469198998748756998466501