Query         gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs    148 out of 661
Neff          5.4 
Searched_HMMs 23785
Date          Wed Jun  1 00:09:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781065.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2a5h_A L-lysine 2,3-aminomutas 100.0       0       0  721.6  28.8  346    2-350    23-368 (416)
  2 1tv8_A MOAA, molybdenum cofact  99.5 2.3E-11 9.8E-16   99.8  18.8  189   97-297    16-223 (340)
  3 3c8f_A Pyruvate formate-lyase   99.1 7.9E-09 3.3E-13   81.9  15.4  159  102-269    26-196 (245)
  4 3iix_A Biotin synthetase, puta  99.0 1.6E-07 6.5E-12   72.8  20.5  198   96-307    54-266 (348)
  5 2yx0_A Radical SAM enzyme; pre  98.7 2.2E-07 9.3E-12   71.7  12.1  227   99-346    74-341 (342)
  6 2qgq_A Protein TM_1862; alpha-  98.6 3.2E-06 1.3E-10   63.5  13.7  185   95-286     4-205 (304)
  7 1r30_A Biotin synthase; SAM ra  98.5 8.8E-05 3.7E-09   53.3  19.1  195   97-306    67-282 (369)
  8 2z2u_A UPF0026 protein MJ0257;  98.4 1.3E-06 5.5E-11   66.2   8.0  192   97-306    53-288 (311)
  9 1olt_A Oxygen-independent copr  98.2 0.00019   8E-09   51.0  16.3  204   96-303    53-279 (457)
 10 3can_A Pyruvate-formate lyase-  97.9 0.00066 2.8E-08   47.1  14.6  109  147-266     7-124 (182)
 11 1vp8_A Hypothetical protein AF  90.0    0.21 8.7E-06   29.5   3.3   89  204-319    66-169 (201)
 12 1v93_A 5,10-methylenetetrahydr  79.2     3.6 0.00015   20.8   8.7  101  127-236    84-201 (296)
 13 3h75_A Periplasmic sugar-bindi  71.5     5.5 0.00023   19.4   7.1  107  145-260   146-253 (350)
 14 2f06_A Conserved hypothetical   68.2     2.1 8.7E-05   22.5   1.9   77  219-296    51-130 (144)
 15 3fdu_A Putative enoyl-COA hydr  67.6     6.6 0.00028   18.9   4.7   39  128-166    34-72  (266)
 16 3lke_A Enoyl-COA hydratase; ny  65.2     4.1 0.00017   20.3   3.0   27  128-154    33-59  (263)
 17 1dci_A Dienoyl-COA isomerase;   65.2     3.1 0.00013   21.2   2.3   28  128-155    33-60  (275)
 18 1yj5_A 5' polynucleotide kinas  63.6     7.8 0.00033   18.4   4.8   57  224-295   266-322 (383)
 19 1e5e_A MGL, methionine gamma-l  63.4     7.9 0.00033   18.3   4.6   97  132-234   272-399 (404)
 20 2dky_A RHO-GTPase-activating p  63.0     4.5 0.00019   20.1   2.8   43  221-263    21-75  (91)
 21 2ia0_A Putative HTH-type trans  62.8     8.1 0.00034   18.3   6.2   53  128-180    94-152 (171)
 22 3myb_A Enoyl-COA hydratase; ss  60.8     5.2 0.00022   19.6   2.8   27  128-154    55-81  (286)
 23 1cs1_A CGS, protein (cystathio  57.9     9.7 0.00041   17.7   4.2   14  248-261   305-318 (386)
 24 2h80_A STAR-related lipid tran  57.4     3.5 0.00015   20.8   1.5   43  221-263    19-73  (81)
 25 3g64_A Putative enoyl-COA hydr  57.1     2.2 9.2E-05   22.3   0.4   25  128-152    46-70  (279)
 26 1lva_A Selenocysteine-specific  56.2      10 0.00044   17.5   7.7  185  125-320    28-232 (258)
 27 2q35_A CURF; crotonase, lyase;  55.5      11 0.00045   17.4   5.0   41  128-168    32-72  (243)
 28 2pju_A Propionate catabolism o  54.3      11 0.00047   17.3   4.9  130  129-297    46-198 (225)
 29 2hz5_A Dynein light chain 2A,   53.8      11 0.00048   17.2   5.9   63  127-189    10-92  (106)
 30 2pbp_A Enoyl-COA hydratase sub  53.1      12 0.00049   17.2   3.8   32  128-159    34-65  (258)
 31 2iex_A Dihydroxynapthoic acid   52.5       8 0.00034   18.3   2.7   25  128-152    41-65  (272)
 32 3p5m_A Enoyl-COA hydratase/iso  51.2      12  0.0005   17.1   3.4  106  128-233    35-197 (255)
 33 3pea_A Enoyl-COA hydratase/iso  50.9      12  0.0005   17.1   3.4   27  128-154    34-60  (261)
 34 1hzd_A AUH, AU-binding protein  50.2      11 0.00045   17.4   3.0   26  128-153    41-67  (272)
 35 2fq6_A Cystathionine beta-lyas  49.8     9.9 0.00042   17.6   2.8   17   89-105   192-208 (415)
 36 1cbf_A Cobalt-precorrin-4 tran  49.6      13 0.00055   16.8   4.8  152  129-311    81-244 (285)
 37 2zf8_A MOTY, component of sodi  48.7      13 0.00057   16.7   3.8  173  143-345    82-273 (278)
 38 1wdk_A Fatty oxidation complex  48.1     6.9 0.00029   18.8   1.8   11  207-217   446-456 (715)
 39 1w79_A D-alanyl-D-alanine carb  48.0      14 0.00058   16.6   3.9   49  252-300   322-370 (489)
 40 3h02_A Naphthoate synthase; ID  47.8     8.4 0.00036   18.1   2.2   25  128-152    56-80  (288)
 41 2e1c_A Putative HTH-type trans  47.7      14 0.00059   16.6   6.8   52  129-180    98-155 (171)
 42 3eno_A Putative O-sialoglycopr  47.7      11 0.00048   17.2   2.8   25  143-170   249-273 (334)
 43 3l7h_A RE64145P, roadblock; LC  46.8      14  0.0006   16.5   4.1   56  129-184     3-76  (97)
 44 1mj3_A Enoyl-COA hydratase, mi  46.6      14 0.00061   16.5   3.7   27  129-155    37-63  (260)
 45 3en9_A Glycoprotease, O-sialog  45.9      15 0.00062   16.4   3.3   33  141-176   246-278 (540)
 46 1t6s_A Conserved hypothetical   45.4      15 0.00063   16.4   4.8  103  147-265    15-133 (162)
 47 1byr_A Protein (endonuclease);  45.1      15 0.00064   16.3   7.3   68  194-268    17-84  (155)
 48 1pgv_A TMD-1, tropomodulin TMD  45.0      15 0.00064   16.3   8.6   91  130-232    28-123 (197)
 49 3i47_A Enoyl COA hydratase/iso  45.0      15 0.00064   16.3   3.3   28  128-155    33-60  (268)
 50 1uiy_A Enoyl-COA hydratase; ly  44.9      15 0.00064   16.3   3.8   24  128-151    28-51  (253)
 51 2rjo_A Twin-arginine transloca  44.0      16 0.00066   16.2   8.8  116  132-258   123-241 (332)
 52 2z6r_A Diphthine synthase; met  42.1      17 0.00071   16.0   3.9  141  130-289    66-223 (265)
 53 3gkb_A Putative enoyl-COA hydr  42.1      17 0.00071   16.0   3.4   27  128-154    37-63  (287)
 54 1pjq_A CYSG, siroheme synthase  41.6      17 0.00072   16.0   4.4  146  131-311   283-440 (457)
 55 3ir2_A DNA DC->DU-editing enzy  41.2      15 0.00064   16.3   2.7   23  162-184   115-137 (207)
 56 3hsi_A Phosphatidylserine synt  40.8      18 0.00074   15.9   5.5   44  191-238   258-302 (458)
 57 2cyy_A Putative HTH-type trans  40.8      18 0.00074   15.9   7.4   52  130-181    79-136 (151)
 58 3h2y_A GTPase family protein;   40.5      14 0.00059   16.6   2.4   73  107-185    35-107 (368)
 59 3jxp_A Coenzyme PQQ synthesis   40.4     8.6 0.00036   18.1   1.3   44  194-237   253-296 (321)
 60 1i1g_A Transcriptional regulat  40.0      18 0.00076   15.8   5.1   52  130-181    76-134 (141)
 61 3a1c_A Probable copper-exporti  40.0      12 0.00051   17.0   2.0   39  217-261   162-200 (287)
 62 2j5i_A P-hydroxycinnamoyl COA   39.9      18 0.00076   15.8   4.3   27  128-154    38-64  (276)
 63 2djw_A Probable transcriptiona  39.6      16 0.00068   16.1   2.6   51  129-179    13-70  (92)
 64 2ivn_A O-sialoglycoprotein end  39.5      16 0.00067   16.2   2.6   31  240-270   247-277 (330)
 65 1nzy_A Dehalogenase, 4-chlorob  38.8      19 0.00079   15.7   3.4   26  128-153    32-57  (269)
 66 3kqf_A Enoyl-COA hydratase/iso  38.6      19  0.0008   15.6   3.4   27  128-154    38-64  (265)
 67 2iye_A Copper-transporting ATP  38.5      17 0.00073   15.9   2.6   23  129-152   139-161 (263)
 68 3f9r_A Phosphomannomutase; try  38.0      19  0.0008   15.6   2.8   16   19-34     21-36  (246)
 69 3a3d_A PBP4, penicillin-bindin  37.5      20 0.00083   15.5   3.8   51  250-300   306-357 (453)
 70 1q52_A MENB; lyase, structural  37.0      20 0.00084   15.5   3.4   25  128-152    66-90  (314)
 71 3njd_A Enoyl-COA hydratase; ss  36.3      21 0.00086   15.4   3.4   25  128-152    64-88  (333)
 72 3p85_A Enoyl-COA hydratase; ss  35.3      21 0.00089   15.3   3.2   52   88-154    26-80  (270)
 73 1ub0_A THID, phosphomethylpyri  35.3      21 0.00089   15.3   5.4  107  126-252    53-180 (258)
 74 3h0u_A Putative enoyl-COA hydr  35.0      20 0.00085   15.5   2.5  107  128-234    36-210 (289)
 75 3mpo_A Predicted hydrolase of   34.6      22 0.00092   15.2   3.0   12   20-31     23-34  (279)
 76 1zq1_A Glutamyl-tRNA(Gln) amid  34.3      22 0.00093   15.2   4.3   74  193-270   317-391 (438)
 77 2np9_A DPGC; protein inhibitor  33.9      22 0.00094   15.2   3.2   26  128-153   196-221 (440)
 78 2j5g_A ALR4455 protein; enzyme  33.5      23 0.00095   15.1   3.4   47  128-174    53-118 (263)
 79 3knz_A Putative sugar binding   33.3      23 0.00096   15.1   9.8   93  128-238    35-128 (366)
 80 3bex_A Type III pantothenate k  32.7      14 0.00058   16.6   1.4   88  127-217    38-133 (249)
 81 3ome_A Enoyl-COA hydratase; ss  32.6      23 0.00098   15.0   3.4   25  128-152    52-76  (282)
 82 2fbm_A Y chromosome chromodoma  32.3      17  0.0007   16.1   1.7   25  128-153    53-77  (291)
 83 2a7k_A CARB; crotonase, antibi  32.2      24   0.001   15.0   8.7   27  128-154    29-55  (250)
 84 2w25_A Probable transcriptiona  32.1      24   0.001   14.9   3.5   80   87-177    48-133 (150)
 85 2zbc_A 83AA long hypothetical   32.0      24   0.001   14.9   6.2   50  130-179    14-70  (83)
 86 1xvi_A MPGP, YEDP, putative ma  31.4      15 0.00065   16.3   1.4   11   20-30     27-37  (275)
 87 1szo_A 6-oxocamphor hydrolase;  31.1      25   0.001   14.8   3.4   25  128-152    45-69  (257)
 88 1pff_A Methionine gamma-lyase;  30.5      25  0.0011   14.8   2.8   18  133-150   209-226 (331)
 89 1nrw_A Hypothetical protein, h  30.4      25  0.0011   14.8   2.9   18  134-152    29-46  (288)
 90 1a2z_A Pyrrolidone carboxyl pe  30.3      25  0.0011   14.8   3.7   15  223-237   118-132 (220)
 91 1nrz_A PTS system, sorbose-spe  30.1      26  0.0011   14.7   2.5   25  219-243   122-146 (164)
 92 1w5d_A Penicillin-binding prot  30.0      26  0.0011   14.7   4.1   50  251-300   322-371 (462)
 93 2cvi_A 75AA long hypothetical   29.7      26  0.0011   14.7   5.9   50  130-179    14-70  (83)
 94 3niw_A Haloacid dehalogenase-l  29.7      26  0.0011   14.7   2.9   16   19-34     22-37  (279)
 95 2ex2_A Penicillin-binding prot  29.5      26  0.0011   14.7   4.2   38  262-299   323-360 (458)
 96 3moy_A Probable enoyl-COA hydr  29.3      26  0.0011   14.6   3.7   29  128-156    39-67  (263)
 97 3lac_A Pyrrolidone-carboxylate  29.3      26  0.0011   14.6   3.1   10  162-171   118-127 (215)
 98 1m1h_A Transcription antitermi  29.3      26  0.0011   14.6   4.3   39  133-171   148-186 (248)
 99 2z99_A Putative uncharacterize  29.3      26  0.0011   14.6   4.8  102  147-260    23-138 (219)
100 1p8c_A Conserved hypothetical   29.3      12 0.00051   17.0   0.6   83   88-182    62-145 (145)
101 1t57_A Conserved protein MTH16  29.2      27  0.0011   14.6   6.1   41  205-248    74-119 (206)
102 1wr8_A Phosphoglycolate phosph  28.9      26  0.0011   14.7   2.2   16   19-34     20-35  (231)
103 1wde_A Probable diphthine synt  28.6      27  0.0011   14.6   2.4   25  145-171    85-109 (294)
104 2e0n_A Precorrin-2 C20-methylt  28.3      27  0.0012   14.5   5.6   39  129-171    84-122 (259)
105 2cg4_A Regulatory protein ASNC  27.4      28  0.0012   14.4   5.9   53  129-181    80-139 (152)
106 2bb3_A Cobalamin biosynthesis   27.3      16 0.00067   16.2   0.9   29  129-160    77-105 (221)
107 3mwd_B ATP-citrate synthase; A  27.1      29  0.0012   14.4  10.2  125  131-267   181-324 (334)
108 3ju1_A Enoyl-COA hydratase/iso  26.9      29  0.0012   14.3   3.9   26  128-153    71-97  (407)
109 3jyv_N 40S ribosomal protein S  26.7     9.5  0.0004   17.8  -0.3   20   86-116    23-42  (50)
110 2gtr_A CDY-like, chromodomain   26.5      17  0.0007   16.0   0.9   24  128-152    35-58  (261)
111 3ec1_A YQEH GTPase; atnos1, at  26.5      25   0.001   14.8   1.8   73  107-185    37-109 (369)
112 2iw0_A Chitin deacetylase; hyd  26.4      30  0.0012   14.3   3.6   15   89-103    62-76  (254)
113 2gqq_A Leucine-responsive regu  25.9      30  0.0013   14.2   4.2   53  127-179    85-144 (163)
114 3eye_A PTS system N-acetylgala  25.7      30  0.0013   14.2   2.5   24  219-242   127-150 (168)
115 1vsq_C Mannose-specific phosph  25.7      30  0.0013   14.2   2.5   38  219-260   125-162 (165)
116 2ps1_A Orotate phosphoribosylt  25.6      16 0.00066   16.2   0.6   77  221-297   139-219 (226)
117 2ppy_A Enoyl-COA hydratase; be  25.0      31  0.0013   14.1   3.4   24  129-152    38-61  (265)
118 1rkq_A Hypothetical protein YI  24.7      32  0.0013   14.1   2.9   34  161-194   164-199 (282)
119 1wz8_A Enoyl-COA hydratase; ly  24.4      32  0.0013   14.0   2.8   24  128-151    39-62  (264)
120 1aug_A Pyroglutamyl peptidase-  24.4      32  0.0013   14.0   3.1   11  225-235   121-131 (215)
121 3llo_A Prestin; STAS domain, c  24.3      13 0.00056   16.7   0.1  105  170-292    26-136 (143)
122 3fst_A 5,10-methylenetetrahydr  24.3      32  0.0014   14.0   9.5  102  127-236    95-204 (304)
123 3dnp_A Stress response protein  24.1      32  0.0014   14.0   2.9   54  136-194   149-203 (290)
124 1ble_A Fructose permease; phos  23.8      33  0.0014   14.0   2.5   39  219-261   123-161 (163)
125 3lao_A Enoyl-COA hydratase/iso  23.8      33  0.0014   14.0   3.4   39  128-166    41-79  (258)
126 1zhv_A Hypothetical protein AT  23.6      33  0.0014   13.9   3.0   44  194-237    80-125 (134)
127 2zkq_n 40S ribosomal protein S  23.5      10 0.00044   17.5  -0.6   20   86-116    27-46  (56)
128 2nyt_A Probable C->U-editing e  23.5      33  0.0014   13.9   4.2   45  194-239    99-144 (190)
129 2q5c_A NTRC family transcripti  23.5      33  0.0014   13.9   3.3  127  131-295    38-185 (196)
130 1yx1_A Hypothetical protein PA  23.4      33  0.0014   13.9   2.9  139  161-315    85-233 (264)
131 2cfx_A HTH-type transcriptiona  23.3      34  0.0014   13.9   4.6   42  130-171    77-124 (144)
132 2p5v_A Transcriptional regulat  22.5      35  0.0015   13.8   6.2   54  129-182    83-143 (162)
133 1wpg_A Sarcoplasmic/endoplasmi  22.4      35  0.0015   13.8   4.5  136  153-300   533-694 (994)
134 2pq0_A Hypothetical conserved   22.1      35  0.0015   13.7   2.8   26  169-194   159-184 (258)
135 2w3z_A Putative deacetylase; P  21.9      36  0.0015   13.7   4.3   46  192-241   121-167 (311)
136 1sg4_A 3,2-trans-enoyl-COA iso  21.5      36  0.0015   13.7   3.4   26  128-153    33-59  (260)
137 1jw2_A Hemolysin expression mo  21.3      37  0.0015   13.6   1.9   28    7-34     17-49  (72)
138 1jxh_A Phosphomethylpyrimidine  21.3      37  0.0015   13.6   5.8  112  128-251    79-204 (288)
139 3erv_A Putative C39-like pepti  21.1      29  0.0012   14.3   1.3   45  239-306   177-221 (236)
140 3gow_A PAAG, probable enoyl-CO  21.0      37  0.0016   13.6   3.4   25  129-153    30-54  (254)
141 1isp_A Lipase; alpha/beta hydr  20.9      37  0.0015   13.6   1.7   19  131-149    55-73  (181)
142 2ej5_A Enoyl-COA hydratase sub  20.2      39  0.0016   13.5   3.4   47  128-174    32-95  (257)

No 1  
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=100.00  E-value=0  Score=721.63  Aligned_cols=346  Identities=36%  Similarity=0.703  Sum_probs=336.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf             33552249988998641999899999999985348438988995358997445011232699778013813353731000
Q gi|254781065|r    2 QLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQFIPQKEELNILPEEREDPIGDN   81 (352)
Q Consensus         2 Qlr~~~i~s~~~L~~~l~Ls~e~~~~~~~~~~~fp~~vtpyyl~LId~~dp~DPi~rQvlP~~~El~~~~~~~~DPl~E~   81 (352)
                      |+++ +|+++++|.++++|++++.++++.+.+.|||+|||||++||||+||+|||+||++|+.+|+...+++..||++|.
T Consensus        23 ql~~-~i~~~~~L~~~l~l~~~~~~~~~~~~~~~p~~vt~yy~~li~~~~p~dPi~rq~~P~~~e~~~~~~~~~Dp~~e~  101 (416)
T 2a5h_A           23 QVRN-RIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHED  101 (416)
T ss_dssp             HHHT-CBCSHHHHHTTSCCCHHHHHHHHTCTTSCCCCBCHHHHTTSCTTCTTCHHHHHHSCCGGGGCCCTTCBSSTTCTT
T ss_pred             HHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
T ss_conf             9999-788999999882989999999999985588748999998638999998788662899899678844445873212


Q ss_pred             CCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH
Q ss_conf             00768871452075379997274300000112233012555567898999999999972997479997269813249899
Q gi|254781065|r   82 NHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR  161 (352)
Q Consensus        82 ~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~  161 (352)
                      .++|+|||+|||++||||.+|++|++|||||||+++++... ..++.++|+++++||++|++|+||+|||||||+++|++
T Consensus       102 ~~~~~~gl~hkY~~rvll~vT~~Cn~~CrYC~R~~~~~~~~-~~l~~~ei~~~i~yi~~~~~I~~V~lTGGePL~r~d~~  180 (416)
T 2a5h_A          102 TDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSD-DSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDET  180 (416)
T ss_dssp             TSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSSS-SBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHH
T ss_pred             CCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH
T ss_conf             24888884001587589984575477287989877568643-43468999999999984898269999789734378899


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH
Q ss_conf             99999998619981289874343563434339999999862599389993369958869999999999998798982327
Q gi|254781065|r  162 LQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       162 L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs  241 (352)
                      |.++++.|++|+||++||||||.|+++|+|++++|.+++.++ +++++++|+|||+|+++++.+|+++++++|++|.||+
T Consensus       181 L~~li~~l~~i~~i~~iri~T~~~~~~p~r~~~~L~~~g~~~-~nisldth~~h~~el~~~v~~~i~~l~~~Gi~vk~n~  259 (416)
T 2a5h_A          181 LEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY-HPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQS  259 (416)
T ss_dssp             HHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG-CSEEEEECCCSGGGCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             999999998479986478880675447277799999877427-6389997427710055999999999997699487304


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE
Q ss_conf             98623457889999999999986982423011345765210118699999999999982888654106631788888235
Q gi|254781065|r  242 VLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKVK  321 (352)
Q Consensus       242 VLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~  321 (352)
                      |||||||||+++|.+|+++|+++||.|||+|++|++.|++||+||+++|++|++++++++||+++|+||+|+|||+||+|
T Consensus       260 VllkGvNDd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g~~~f~v~~~~~~eI~~~l~~~l~G~~~p~~v~d~p~g~gK~~  339 (416)
T 2a5h_A          260 VLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTP  339 (416)
T ss_dssp             ECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEETTTTEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
T ss_conf             05677438889999999999867976999983478874321567799999999999864888664157763589987635


Q ss_pred             ECCHHHEEECCCEEEEECCCCCEEECCCC
Q ss_conf             55102123139879998169988718988
Q gi|254781065|r  322 IDTHNIKKVGNGSYCITDHHNIVHDYPPK  350 (352)
Q Consensus       322 i~~~~~~~~~~~~~~l~~~~g~~~~yp~~  350 (352)
                      +.|+|+...+.+.+.+++++|++..|++|
T Consensus       340 l~p~~~~~~~~~~~~~~~~~G~ig~y~~p  368 (416)
T 2a5h_A          340 VMPNYVISQSHDKVILRNFEGVITTYSEP  368 (416)
T ss_dssp             CCCCCEEEEETTEEEEECTTCCEEEEECC
T ss_pred             CCCCCCCCCCCCEEEEECCCCCEEEECCC
T ss_conf             77632015788679997799858985578


No 2  
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.45  E-value=2.3e-11  Score=99.82  Aligned_cols=189  Identities=19%  Similarity=0.326  Sum_probs=130.1

Q ss_pred             EEEEECCCCCCHHHCCCCCCEECC-----CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799972743000001122330125-----555678989999999999729974799972698132498999999999861
Q gi|254781065|r   97 ILLKLLHVCPVYCRFCFRREMVGS-----QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus        97 vLl~~t~~C~~~CryCfR~~~~~~-----~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +=+-+|++|+..|.||+.....++     .....++.++|.+.++-+.+. .+..|.+|||+||+-+|  +.+++..++.
T Consensus        16 lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~~-gv~~i~ltGGEPllr~d--~~~~i~~~~~   92 (340)
T 1tv8_A           16 LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL-GVKKIRITGGEPLMRRD--LDVLIAKLNQ   92 (340)
T ss_dssp             EEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT-TCCEEEEESSCGGGSTT--HHHHHHHHTT
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCHHCCHH--HHHHHHHHHH
T ss_conf             79971552178896889640067777767610348999999999999876-98099963886200700--6999987521


Q ss_pred             CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C------CHHHHHHHHHHHHCCCEEEEC
Q ss_conf             99812898743435634343399999998625993899933699588-----6------999999999999879898232
Q gi|254781065|r  172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F------SEEAIAAISRLANAGIILLSQ  240 (352)
Q Consensus       172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l------t~~~~~A~~~L~~~Gv~v~nQ  240 (352)
                      ...+..+-+.|-.      .++++.++.|++.+.. .+.+-+...++     +      -..+.++++.++++|+.+.-.
T Consensus        93 ~~~~~~~~~Tng~------ll~~~~~~~L~~~gl~-~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~~~~~g~~v~in  165 (340)
T 1tv8_A           93 IDGIEDIGLTTNG------LLLKKHGQKLYDAGLR-RINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVN  165 (340)
T ss_dssp             CTTCCEEEEEECS------TTHHHHHHHHHHHTCC-EEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEECCCCC------CCCHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             0221024210786------5342138999984998-88504677658888776510565000037999999879987999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCHHHHHHHHHHH
Q ss_conf             79862345788999999999998698242301134576521---0118699999999999
Q gi|254781065|r  241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTS---HFRLTIEEGQKIVASL  297 (352)
Q Consensus       241 sVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l  297 (352)
                      +|+++++|++  .+.++.+-....++.-.+......-.+..   ...++.++.....+..
T Consensus       166 ~vv~~~~N~~--~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  223 (340)
T 1tv8_A          166 VVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQH  223 (340)
T ss_dssp             EEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHH
T ss_pred             EEECCCCCHH--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             8974886256--689999999847981999999843676663312568899999999984


No 3  
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.09  E-value=7.9e-09  Score=81.95  Aligned_cols=159  Identities=13%  Similarity=0.242  Sum_probs=103.7

Q ss_pred             CCCCCCHHHCCCCCCEECCCCCCCCCHHH-HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             27430000011223301255556789899-9999999972-997479997269813249899999999986199812898
Q gi|254781065|r  102 LHVCPVYCRFCFRREMVGSQKGTVLSSKD-TEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILR  179 (352)
Q Consensus       102 t~~C~~~CryCfR~~~~~~~~~~~~~~~~-~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IR  179 (352)
                      +..|+..|.||+-++..........+.++ ++++..+.+. ...+..|.+|||+|++- .+.+.++++.+++. .+ .+.
T Consensus        26 ~~GCN~~C~~C~n~~~~~~~~~~~~~~~e~~~ei~~~~~~~~~~~~~v~~sGGEP~l~-~~~l~~l~~~~k~~-g~-~~~  102 (245)
T 3c8f_A           26 FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-AEFVRDWFRACKKE-GI-HTC  102 (245)
T ss_dssp             ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-HHHHHHHHHHHHTT-TC-CEE
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC-HHHHHHHHHHHHHH-CC-CEE
T ss_conf             7874788989997134186799188999999999999997525787585355565346-99999999988864-38-479


Q ss_pred             EECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C----CHHHHHHHHHHHHCCCEEEECHHHHHCCCCC
Q ss_conf             743435634343399999998625993899933699588-----6----9999999999998798982327986234578
Q gi|254781065|r  180 FHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F----SEEAIAAISRLANAGIILLSQSVLLKGINDD  250 (352)
Q Consensus       180 i~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l----t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~  250 (352)
                      +.|-.....    .++.++.+...-.  ++..-+..+++     +    ...+.++++.+.++|+.+.-.+++++|+||+
T Consensus       103 l~TnG~~~~----~~~~~~~l~~~~d--~v~id~~~~~~~~~~~~~g~~~~~vl~~l~~l~~~g~~v~i~~~~i~g~~d~  176 (245)
T 3c8f_A          103 LDTNGFVRR----YDPVIDELLEVTD--LVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDD  176 (245)
T ss_dssp             EEECCCCCC----CCHHHHHHHHTCS--EEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTTTCC
T ss_pred             EECCCCCCC----CHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf             977886555----3456666523575--7998435467889998738650899999999997899899999998994899


Q ss_pred             HHHHHHHHHHHHHCC-CEEE
Q ss_conf             899999999999869-8242
Q gi|254781065|r  251 PEILANLMRTFVELR-IKPY  269 (352)
Q Consensus       251 ~~~l~~L~~~L~~~g-V~PY  269 (352)
                      .+.+.++.+-+..++ +.++
T Consensus       177 ~e~i~~i~~~i~~l~~~~~v  196 (245)
T 3c8f_A          177 DDSAHRLGEFTRDMGNVEKI  196 (245)
T ss_dssp             HHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999857997558


No 4  
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.05  E-value=1.6e-07  Score=72.78  Aligned_cols=198  Identities=14%  Similarity=0.162  Sum_probs=137.7

Q ss_pred             EEEEEECCCCCCHHHCC-CCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999727430000011-22330125555678989999999999729974799972698132498999999999861998
Q gi|254781065|r   96 RILLKLLHVCPVYCRFC-FRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKH  174 (352)
Q Consensus        96 rvLl~~t~~C~~~CryC-fR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~h  174 (352)
                      ++.+..|+.|+..|.|| |++. .+......++.+++.+.+..+.+ ..+++|+++||+........+..++..+.+..-
T Consensus        54 ~~~I~~Sn~C~~~C~fC~~~~~-~~~~~~~~ls~eeI~~~~~~~~~-~G~~~i~l~~g~~~~~~~~~~~~~i~~i~~~~~  131 (348)
T 3iix_A           54 RAIIEFSNVCRKNCLYCGLRRD-NKNLKRYRMTPEEIVERARLAVQ-FGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGV  131 (348)
T ss_dssp             EEEEEEECCCSCCCTTCTTCTT-CCSSCCCBCCHHHHHHHHHHHHH-TTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSC
T ss_pred             EEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             9988865888998914998836-99976615899999999999998-199289982588876648999999874033321


Q ss_pred             CEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C----C-HHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             12898743435634343399999998625993899933699588-----6----9-999999999998798982327986
Q gi|254781065|r  175 VQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F----S-EEAIAAISRLANAGIILLSQSVLL  244 (352)
Q Consensus       175 v~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l----t-~~~~~A~~~L~~~Gv~v~nQsVLL  244 (352)
                      .-.+.         ...++++.++.|++.+..- +..-....++     +    + .+..++++.++++|+.+..-  ++
T Consensus       132 ~i~~~---------~g~~~~e~l~~L~~aG~~~-~~~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~--~i  199 (348)
T 3iix_A          132 AVTLS---------LGEWPREYYEKWKEAGADR-YLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG--SM  199 (348)
T ss_dssp             EEEEE---------CCCCCHHHHHHHHHHTCCE-EECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEEC--BE
T ss_pred             EEEEC---------CCCCHHHHHHHHHHHCCCE-EEECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEE--EE
T ss_conf             23202---------4543089999999828967-985634434021220114777312467766776249727888--99


Q ss_pred             HCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             234-5788999999999998698242301134576521---01186999999999999828886541
Q gi|254781065|r  245 KGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTS---HFRLTIEEGQKIVASLKEKISGLCQP  307 (352)
Q Consensus       245 kgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l~~~lsG~~~P  307 (352)
                      =|. +.+.+.+.+....|.++++.-..++...|.+|+.   +-.++..+.++++.-+|=.++.-.++
T Consensus       200 ~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~~~~~~~~~l~~ia~~Rl~lp~~~i~  266 (348)
T 3iix_A          200 VGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIP  266 (348)
T ss_dssp             ESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCB
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf             9459999999999999997279988989866751999765689959999999999999968987736


No 5  
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=98.73  E-value=2.2e-07  Score=71.71  Aligned_cols=227  Identities=14%  Similarity=0.158  Sum_probs=130.3

Q ss_pred             EEEC-CCCCCHHHCCCCCC--EECCCCC-CCCC-HHHHHHHHH----HHHHC--------------CCEEEEEEEC-CCC
Q ss_conf             9972-74300000112233--0125555-6789-899999999----99729--------------9747999726-981
Q gi|254781065|r   99 LKLL-HVCPVYCRFCFRRE--MVGSQKG-TVLS-SKDTEAALA----YIQEK--------------SQIWEVIFTG-GDP  154 (352)
Q Consensus        99 l~~t-~~C~~~CryCfR~~--~~~~~~~-~~~~-~~~~~~~~~----Yi~~~--------------~eI~eVilSG-GDP  154 (352)
                      +.++ ..|+..|.||+|-+  ..+.... ..-. ..-++.+++    .|..-              -.++.|.+|| |+|
T Consensus        74 ~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~~Ea~~~~hvais~~GEP  153 (342)
T 2yx0_A           74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP  153 (342)
T ss_dssp             EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             43041520258988899877777766544447989999999999999887642676302566665248767999578775


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C--------CH
Q ss_conf             3249899999999986199812898743435634343399999998625993899933699588-----6--------99
Q gi|254781065|r  155 LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F--------SE  221 (352)
Q Consensus       155 l~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l--------t~  221 (352)
                      ++.++  |.++++.+.+-. + .+.+-|..  ++|.+    +..........-.+.+-++.+++     +        -+
T Consensus       154 ll~p~--l~eli~~~~~~g-i-~~~l~TNG--tl~~~----~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e  223 (342)
T 2yx0_A          154 MLYPY--MGDLVEEFHKRG-F-TTFIVTNG--TIPER----LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWE  223 (342)
T ss_dssp             GGSTT--HHHHHHHHHHTT-C-EEEEEECS--CCHHH----HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH
T ss_pred             CCCHH--HHHHHHHHHHCC-C-EEEEECCC--CCHHH----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH
T ss_conf             34555--999999998639-6-49996588--66117----999998747886799835789989999873766767799


Q ss_pred             HHHHHHHHHHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHH
Q ss_conf             999999999987989823279862345-788999999999998--6982423011345765210118-699999999999
Q gi|254781065|r  222 EAIAAISRLANAGIILLSQSVLLKGIN-DDPEILANLMRTFVE--LRIKPYYLHHPDLAAGTSHFRL-TIEEGQKIVASL  297 (352)
Q Consensus       222 ~~~~A~~~L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~--~gV~PYYl~~~d~v~G~~hf~v-~~~~~~~i~~~l  297 (352)
                      .+.++++.|++.|+.+.-.++|++|+| |+.+.+++|.++.--  .-+++ |+|...-......-.+ .-++-.+..++|
T Consensus       224 rvl~~L~~L~~~g~~~vir~tlv~g~N~~ei~~~a~li~~~~pdfie~k~-y~~~G~s~~~L~~~~mP~~eEv~~fa~~l  302 (342)
T 2yx0_A          224 RILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKA-YMFVGYSRNRLTINNMPSHQDIREFAEAL  302 (342)
T ss_dssp             HHHHHHHHHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEE-CC------CCCCGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE-EEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999996699889999996898766699999999865999899960-38705786546401399889999999999


Q ss_pred             HHHCCCCCCCEEEEECCCCCCCEEECCHHHEEECCCEEEEECCCCCEEE
Q ss_conf             9828886541066317888882355510212313987999816998871
Q gi|254781065|r  298 KEKISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHD  346 (352)
Q Consensus       298 ~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~~~~~~~~l~~~~g~~~~  346 (352)
                      -..++||.+-.   +-+  .+-+.+     .++.+-.-..++.+|+.++
T Consensus       303 ~~~l~gy~i~~---e~~--~SrvvL-----L~~~~~~~k~~~~~g~~~~  341 (342)
T 2yx0_A          303 VKHLPGYHIED---EYE--PSRVVL-----IMRDDVDPQGTGVEGRFIK  341 (342)
T ss_dssp             HTTCTTEEEEE---EEG--GGTEEE-----EEETTSEEEEEGGGEEECC
T ss_pred             HHHCCCCEEEC---CCC--CCEEEE-----EEECCCCCCCCEECCEEEC
T ss_conf             98635977640---568--743899-----9840326554420646735


No 6  
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=98.55  E-value=3.2e-06  Score=63.55  Aligned_cols=185  Identities=19%  Similarity=0.247  Sum_probs=131.2

Q ss_pred             CEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-----HHHHHHHHHH
Q ss_conf             53799972743000001122330125555678989999999999729974799972698132498-----9999999998
Q gi|254781065|r   95 DRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSH-----KRLQKVLKTL  169 (352)
Q Consensus        95 ~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~-----~~L~~ll~~L  169 (352)
                      -+|.+.++..|+..|.||.=..+-|..  ...+.+++-+-++++.+. .++|++|+|.|-.....     ..+..++..+
T Consensus         4 ~~A~i~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Ii~Ei~~l~~~-G~kei~l~~~d~~~~~~~~~~~~~~~~L~~~~   80 (304)
T 2qgq_A            4 PYAYVKISDGCDRGCTFCSIPSFKGSL--RSRSIEDITREVEDLLKE-GKKEIILVAQDTTSYGIDLYRKQALPDLLRRL   80 (304)
T ss_dssp             SEEEEESBCCC-------------CCC--CBCCHHHHHHHHHHHHHT-TCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCEECEEEEEECCE--EEECHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             619989776989987755562014983--771999999999999986-99099998564665554244511489999987


Q ss_pred             HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC-EEEEECCCCHHH--C--------CHHHHHHHHHHHHCCCEEE
Q ss_conf             6199812898743435634343399999998625993-899933699588--6--------9999999999998798982
Q gi|254781065|r  170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP-VYIAIHANHPYE--F--------SEEAIAAISRLANAGIILL  238 (352)
Q Consensus       170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~-~~iv~H~NHp~E--l--------t~~~~~A~~~L~~~Gv~v~  238 (352)
                      ..+....++|+.+    ..|..+++++++.+.+.++- .++..-+.|..+  |        .++..+++.++++.+.-+.
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~  156 (304)
T 2qgq_A           81 NSLNGEFWIRVMY----LHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAV  156 (304)
T ss_dssp             HTSSSSCEEEECC----CCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCE
T ss_pred             HCCCCCEEEEEEC----CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             2368835899403----584367788777676448464677406432787999875047645554458876766489955


Q ss_pred             ECHHHHHC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             32798623-4578899999999999869824230113457652101186
Q gi|254781065|r  239 SQSVLLKG-INDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT  286 (352)
Q Consensus       239 nQsVLLkg-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~  286 (352)
                      -.+=++=| =.++.+++.++.+-+.+++.-=-.+|..-|-+||.-|..+
T Consensus       157 i~t~fIvGfPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~  205 (304)
T 2qgq_A          157 LRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLK  205 (304)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC----------
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCC
T ss_conf             7635756789876899999999998569783300242566997666636


No 7  
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=98.46  E-value=8.8e-05  Score=53.35  Aligned_cols=195  Identities=14%  Similarity=0.182  Sum_probs=124.1

Q ss_pred             EEEEE-CCCCCCHHHCC-CCCCEECC-CCCCCCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-CHHHHHHHHHHHHC
Q ss_conf             79997-27430000011-22330125-55567898999999999972997479997-26981324-98999999999861
Q gi|254781065|r   97 ILLKL-LHVCPVYCRFC-FRREMVGS-QKGTVLSSKDTEAALAYIQEKSQIWEVIF-TGGDPLIL-SHKRLQKVLKTLRY  171 (352)
Q Consensus        97 vLl~~-t~~C~~~CryC-fR~~~~~~-~~~~~~~~~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-~~~~L~~ll~~L~~  171 (352)
                      .++.+ |+.|...|+|| |+++.-.+ ......+.+++.+.+..+.+. ..+++.+ +|++|..- .-+.+..++..+.+
T Consensus        67 ~iin~~Tn~C~~~C~FCafs~~~~~~~~~~~l~s~eeI~e~a~~~~~~-G~~~i~l~~g~~~~~~~~~~~~~~~i~~i~~  145 (369)
T 1r30_A           67 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA-GSTRFCMGAAWKNPHERDMPYLEQMVQGVKA  145 (369)
T ss_dssp             EEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT-TCSEEEEEECCSSCCTTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             687755899998892299734189998754668879999999989875-9979999957888870279999999998520


Q ss_pred             CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------CHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             998128987434356343433999999986259938999336995886---------99999999999987989823279
Q gi|254781065|r  172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------SEEAIAAISRLANAGIILLSQSV  242 (352)
Q Consensus       172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------t~~~~~A~~~L~~~Gv~v~nQsV  242 (352)
                      ..    +.++     .-+..++.+.+..|++.+..- +..-+...+|.         .++-.++++.++++|+.+..-  
T Consensus       146 ~~----~~i~-----~~~~~l~~e~l~~Lk~aG~~~-~~~~lEt~~~~~~~~~~~~~~~~rl~~l~~a~~~Gi~~~~g--  213 (369)
T 1r30_A          146 MG----LEAC-----MTLGTLSESQAQRLANAGLDY-YNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG--  213 (369)
T ss_dssp             TT----SEEE-----EECSSCCHHHHHHHHHHCCCE-EECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECC--
T ss_pred             CC----CEEE-----EECCCCCHHHHHHHHHHCCCE-ECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--
T ss_conf             47----5476-----512679899999998518788-83434245554213434587999999999999828973588--


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8623457889999999999986982----42301134576521---0118699999999999982888654
Q gi|254781065|r  243 LLKGINDDPEILANLMRTFVELRIK----PYYLHHPDLAAGTS---HFRLTIEEGQKIVASLKEKISGLCQ  306 (352)
Q Consensus       243 LLkgVND~~~~l~~L~~~L~~~gV~----PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l~~~lsG~~~  306 (352)
                      +|=|..++.+.+.++...|.++++.    |...|.  |.+|+.   +-.++..+.++++.-.|=.+|.-.+
T Consensus       214 ~i~G~gEt~ed~i~~l~~Lr~L~~~~~~v~~~~f~--P~~gT~l~~~~~~~~~e~lr~iAi~Rl~lP~~~i  282 (369)
T 1r30_A          214 GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLV--KVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYV  282 (369)
T ss_dssp             EEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECC--CCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf             89788999999999999998668998665550046--6899976667899999999999999997788643


No 8  
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=98.37  E-value=1.3e-06  Score=66.23  Aligned_cols=192  Identities=18%  Similarity=0.160  Sum_probs=107.2

Q ss_pred             EEEEEC-CCCCCHHHCCCCCCE--ECCCCC-----CCCC-HHHHHHHHH----HHHH---------------CCCEEEEE
Q ss_conf             799972-743000001122330--125555-----6789-899999999----9972---------------99747999
Q gi|254781065|r   97 ILLKLL-HVCPVYCRFCFRREM--VGSQKG-----TVLS-SKDTEAALA----YIQE---------------KSQIWEVI  148 (352)
Q Consensus        97 vLl~~t-~~C~~~CryCfR~~~--~~~~~~-----~~~~-~~~~~~~~~----Yi~~---------------~~eI~eVi  148 (352)
                      +=+.++ ..|+..|.||+|.+.  ++....     ..-. ..-.+.+++    .|..               --.++-+.
T Consensus        53 ~~~tPs~~~CN~rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~~~~ia  132 (311)
T 2z2u_A           53 IQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVA  132 (311)
T ss_dssp             EEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE
T ss_conf             65335730020879477698878777773101344548999999999999999976532677540156666523763798


Q ss_pred             EE-CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----CC--
Q ss_conf             72-69813249899999999986199812898743435634343399999998625993899933699588-----69--
Q gi|254781065|r  149 FT-GGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----FS--  220 (352)
Q Consensus       149 lS-GGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----lt--  220 (352)
                      +| ||+|++-++  |.++++.+.+.. + .+-+-|..  .+|+        .|++.+. -.+.+-++.+++     ++  
T Consensus       133 is~~GEP~l~p~--l~eli~~~~~~g-i-~~~l~TNG--~~~d--------~l~~l~~-~~l~vSlDa~~~e~~~~i~r~  197 (311)
T 2z2u_A          133 ISLSGEPTLYPY--LDELIKIFHKNG-F-TTFVVSNG--ILTD--------VIEKIEP-TQLYISLDAYDLDSYRRICGG  197 (311)
T ss_dssp             ECSSSCGGGSTT--HHHHHHHHHHTT-C-EEEEEECS--CCHH--------HHHHCCC-SEEEEECCCSSTTTC----CC
T ss_pred             ECCCCCCCHHHH--HHHHHHHHHHCC-C-EEEEEECC--CCHH--------HHHHHCC-CEEEEEECCCCHHHHHHHHCC
T ss_conf             626887304789--999999998759-7-27754154--3447--------8987055-158863047999999998675


Q ss_pred             -----HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCC-HHHHHH
Q ss_conf             -----9999999999987989823279862345788999999999998698--24230113457652101186-999999
Q gi|254781065|r  221 -----EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRI--KPYYLHHPDLAAGTSHFRLT-IEEGQK  292 (352)
Q Consensus       221 -----~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV--~PYYl~~~d~v~G~~hf~v~-~~~~~~  292 (352)
                           +.+.++++.|++.|..+.+ .++++|+||+.+.+++|.+.+---.|  +| |+|...-...-....+| .++-++
T Consensus       198 ~~~~~e~vl~~l~~l~~~~~~vir-~tlv~g~Nddi~~~a~l~~~~~~~fIEvk~-~~~~G~s~~~l~~~~~p~~eEv~e  275 (311)
T 2z2u_A          198 KKEYWESILNTLDILKEKKRTCIR-TTLIRGYNDDILKFVELYERADVHFIELKS-YMHVGYSQKRLKKEDMLQHDEILK  275 (311)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSEEEE-EEECTTTTCCGGGTHHHHHHHTCSEEEEEE-CC------------CCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEE-EEEECCCCCCHHHHHHHHHHCCCCEEEEEC-EEECCCCCCCCCCCCCCCHHHHHH
T ss_conf             623799999999999866987999-984367764899999999753998899964-085146645254025999999999


Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99999982888654
Q gi|254781065|r  293 IVASLKEKISGLCQ  306 (352)
Q Consensus       293 i~~~l~~~lsG~~~  306 (352)
                      +.+.+. ..+||.+
T Consensus       276 ~~~~l~-~~~~y~i  288 (311)
T 2z2u_A          276 LAKMLD-ENSSYKL  288 (311)
T ss_dssp             HHHHHH-TSSSEEE
T ss_pred             HHHHHH-HCCCCEE
T ss_conf             999986-5249646


No 9  
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=98.22  E-value=0.00019  Score=50.97  Aligned_cols=204  Identities=16%  Similarity=0.198  Sum_probs=130.7

Q ss_pred             EEEEEECCCCCCHHHCCCCCCEECCCCCCCCC--HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             37999727430000011223301255556789--8999999999972---997479997269813249899999999986
Q gi|254781065|r   96 RILLKLLHVCPVYCRFCFRREMVGSQKGTVLS--SKDTEAALAYIQE---KSQIWEVIFTGGDPLILSHKRLQKVLKTLR  170 (352)
Q Consensus        96 rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~--~~~~~~~~~Yi~~---~~eI~eVilSGGDPl~l~~~~L~~ll~~L~  170 (352)
                      ..|.+=-..|...|.||--...++..... ..  -+.+.+-++..+.   ...|..+-+-||-|-.|+.+.|..+++.|+
T Consensus        53 lsLYiHIPFC~~~C~yC~~~~~~~~~~~~-~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~~~~l~~l~~~l~  131 (457)
T 1olt_A           53 LSLYVHIPFCHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLR  131 (457)
T ss_dssp             EEEEEEECEESSCCTTCCSSCEECSCTHH-HHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCCCCEECCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             49999708989889999982455888661-99999999999999655638997459998287504489999999999999


Q ss_pred             CCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEEEECH
Q ss_conf             19981289874343563434339999999862599-38999336995886--------9999999999998798982327
Q gi|254781065|r  171 YIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       171 ~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQs  241 (352)
                      +.-.+  -....-..-..|..+|.+.++.+++.|. .+.+-++-=.+..+        ..++.+++..++++|+.-.|= 
T Consensus       132 ~~f~~--~~~~e~tiE~~P~~~~~~~l~~l~~~G~nRiSlGvQsfd~~vlk~i~R~~~~e~~~~~i~~~r~~g~~~i~~-  208 (457)
T 1olt_A          132 ENFQF--NADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNI-  208 (457)
T ss_dssp             HHSCE--EEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEE-
T ss_pred             HHCCC--CCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEC-
T ss_conf             86477--877079998259987176799997379987996078697798856214673888999999999840543723-


Q ss_pred             HHHHCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------CCHHHHHHHHHHHHHHCCC
Q ss_conf             986234-5788999999999998698242301134576521011--------8699999999999982888
Q gi|254781065|r  242 VLLKGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFR--------LTIEEGQKIVASLKEKISG  303 (352)
Q Consensus       242 VLLkgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~--------v~~~~~~~i~~~l~~~lsG  303 (352)
                      -|+=|. +.+.+.+.+-.+.+.+++.-=--+|.....+++....        .+.++..++++.....+..
T Consensus       209 DLI~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~a~~~L~~  279 (457)
T 1olt_A          209 DLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ  279 (457)
T ss_dssp             EEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             31577998337788889988884089811343110078427766322223542027999999999999997


No 10 
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.95  E-value=0.00066  Score=47.15  Aligned_cols=109  Identities=20%  Similarity=0.258  Sum_probs=78.9

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C--
Q ss_conf             997269813249899999999986199812898743435634343399999998625993899933699588-----6--
Q gi|254781065|r  147 VIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F--  219 (352)
Q Consensus       147 VilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l--  219 (352)
                      |-+|||+|++-++ .|.+++..+++. .+. +.+-|.... .+     +..+.+......+  ..-+.++++     +  
T Consensus         7 Vt~sGGEP~l~~~-~l~ei~~~~k~~-g~~-~~l~TNG~l-~~-----e~~~~~~~~~d~~--~~sl~~~~~e~~~~i~g   75 (182)
T 3can_A            7 VTFCGGEPLLHPE-FLIDILKRCGQQ-GIH-RAVDTTLLA-RK-----ETVDEVMRNCELL--LIDLKSMDSTVHQTFCD   75 (182)
T ss_dssp             EEECSSTGGGSHH-HHHHHHHHHHHT-TCC-EEEECTTCC-CH-----HHHHHHHHTCSEE--EEECCCSCHHHHHHHHS
T ss_pred             EEEEECCHHCCHH-HHHHHHHHHHHC-CCC-EEEECCCCC-CH-----HHHHHHHHHHHHE--ECCCCCCCHHHHHHHHC
T ss_conf             8998303509887-999999999887-991-999817752-48-----9999854322325--41423368999998849


Q ss_pred             --CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             --99999999999987989823279862345788999999999998698
Q gi|254781065|r  220 --SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRI  266 (352)
Q Consensus       220 --t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV  266 (352)
                        ...+.+.++.+.++|..+.-..++++|+||+.+.+.+|.+-+.+++.
T Consensus        76 ~~~~~v~~~i~~l~~~~~~v~~~~~vi~~~~~~~~~i~~l~~~i~~~~~  124 (182)
T 3can_A           76 VPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR  124 (182)
T ss_dssp             SCSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9889999889999971985057898878865999999999999985699


No 11 
>1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2
Probab=90.02  E-value=0.21  Score=29.51  Aligned_cols=89  Identities=20%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             CCCEEEEEC---CCCH--HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC----------CCHHHHHHHHHHHHHCCCEE
Q ss_conf             993899933---6995--88699999999999987989823279862345----------78899999999999869824
Q gi|254781065|r  204 GKPVYIAIH---ANHP--YEFSEEAIAAISRLANAGIILLSQSVLLKGIN----------DDPEILANLMRTFVELRIKP  268 (352)
Q Consensus       204 ~~~~~iv~H---~NHp--~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN----------D~~~~l~~L~~~L~~~gV~P  268 (352)
                      +.++++|+|   |.-|  +|+++|.   .+.|++.|+.|+.+|=+|.|+-          --+|.+++-.+.||..|++ 
T Consensus        66 g~~lVvVth~~GF~~pg~~e~~~e~---~~~L~~~G~~V~t~tH~lsG~eR~is~kfgG~~p~EiiA~tLR~lfgqG~K-  141 (201)
T 1vp8_A           66 GLEVVVVTYHTGFVREGENTMPPEV---EEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLK-  141 (201)
T ss_dssp             TCEEEEEECCTTSSSTTCCSSCHHH---HHHHHHTTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHH-
T ss_pred             CCCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE-
T ss_conf             9829999563687899957489999---999997798899951433430466422147979899999999998478747-


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf             230113457652101186999999999999828886541066317888882
Q gi|254781065|r  269 YYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPGGYGK  319 (352)
Q Consensus       269 YYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GK  319 (352)
                                        +.--..+|.-=.|.+|+  -.  |+-+ ||.||
T Consensus       142 ------------------VavEi~lMAaDaGlIp~--ee--VIAi-GGT~~  169 (201)
T 1vp8_A          142 ------------------VCVEITIMAADSGAIPI--EE--VVAV-GGRSR  169 (201)
T ss_dssp             ------------------HHHHHHHHHHHTTSSCS--SC--EEEE-ECSSS
T ss_pred             ------------------EEEEEEEEEECCCCCCC--CC--EEEE-CCCCC
T ss_conf             ------------------99998654305799870--00--8997-55667


No 12 
>1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} SCOP: c.1.23.1
Probab=79.22  E-value=3.6  Score=20.79  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------------CHHHHHHHHHHHHCCCCCEEEEEEC-CEEEEEHHHCC
Q ss_conf             9899999999997299747999726981324------------9899999999986199812898743-43563434339
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------------SHKRLQKVLKTLRYIKHVQILRFHS-RVPIVDPQRIN  193 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------------~~~~L~~ll~~L~~i~hv~~IRi~T-R~pv~~P~Rit  193 (352)
                      ++.+++..+....+. .|++|+.=+|||-.-            ....|-..+.....    ..+.+|. -.|-..|+--+
T Consensus        84 n~~~l~~~l~~~~~~-GI~niLal~GD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~----~~~~igva~~Peghp~~~~  158 (296)
T 1v93_A           84 SRKEVAEVLHRFVES-GVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYG----DRVSVGGAAYPEGHPESES  158 (296)
T ss_dssp             CHHHHHHHHHHHHHT-TCCEEEECCCCCCTTCSSCCCCTTSCSSHHHHHHHHHHHHG----GGSEEEEEECTTCCTTCSS
T ss_pred             CHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCH
T ss_conf             788899999999981-98867661488766576778874212679999999997256----5545555568877864133


Q ss_pred             -HHHHHHHH---HCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE
Q ss_conf             -99999986---25993899933699588699999999999987989
Q gi|254781065|r  194 -PELIQCLK---EAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII  236 (352)
Q Consensus       194 -~~L~~~l~---~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~  236 (352)
                       +..++.|+   +.+ --+++|++-==.|   ...+-+.+++++|+.
T Consensus       159 ~~~di~~l~~K~~aG-A~f~iTQ~~fd~~---~~~~~~~~~r~~gi~  201 (296)
T 1v93_A          159 LEADLRHFKAKVEAG-LDFAITQLFFNNA---HYFGFLERARRAGIG  201 (296)
T ss_dssp             HHHHHHHHHHHHHTT-CSEEEEEECSSHH---HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCC-CCEEEEEEEECHH---HHHHHHHHHHHCCCC
T ss_conf             999999999999818-8706621166289---999999999975999


No 13 
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.51  E-value=5.5  Score=19.43  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             EEEEEECCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHH
Q ss_conf             7999726981324-989999999998619981289874343563434339999999862599389993369958869999
Q gi|254781065|r  145 WEVIFTGGDPLIL-SHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEA  223 (352)
Q Consensus       145 ~eVilSGGDPl~l-~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~  223 (352)
                      ..|++-.|+|-.. +..+..-+.+.|.+-+.++.+.+..=  -+.++......-++|+++...-.+.+. |     +.-+
T Consensus       146 ~~i~~i~G~~~~~~~~~R~~G~~~al~~~~~~~i~~~~~~--~~~~~~a~~~~~~lL~~~pdi~ai~~~-n-----D~~A  217 (350)
T 3h75_A          146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYG--EWNRERAYRQAQQLLKRYPKTQLVWSA-N-----DEMA  217 (350)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCTTEEEEEES-S-----HHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEEC-C-----HHHH
T ss_conf             4799995886772788988899999997799740255543--256899999999998359998099987-8-----5999


Q ss_pred             HHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9999999987989823279862345788999999999
Q gi|254781065|r  224 IAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       224 ~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      .-|++.++++|..+... +.+-|++++++++..+-..
T Consensus       218 ~Ga~~Al~~~G~~~~~d-i~vvG~D~~~~~l~~i~~G  253 (350)
T 3h75_A          218 LGAMQAARELGRKPGTD-LLFSGVNSSPEALQALIDG  253 (350)
T ss_dssp             HHHHHHHHHTTCCBTTT-BEEEEESCCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCC-EEEEEECCCHHHHHHHHCC
T ss_conf             99999999759999999-5999989859999998679


No 14 
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11
Probab=68.17  E-value=2.1  Score=22.47  Aligned_cols=77  Identities=9%  Similarity=0.080  Sum_probs=54.6

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHH
Q ss_conf             6999999999999879898232798623457889999999999986982423011345765210118---6999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVA  295 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~  295 (352)
                      +.....++...+.+.|..+--.+|...|..|.+-.+.++++.|...||.=-|+++... .+...|-+   ..+++.++.+
T Consensus        51 ~~~~~~~~~~~l~~~~~~~~~~~vvg~~m~~~~G~~a~i~~~L~~~~INI~~i~~~~s-~~~~~~vi~~~D~~~a~~~L~  129 (144)
T 2f06_A           51 IVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN-NNVANVVIRPSNMDKCIEVLK  129 (144)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC-CCCEEEEEECCCHHHHHHHHH
T ss_conf             3221123344444047625589877247667850899999999868998798752337-783699997365999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781065|r  296 S  296 (352)
Q Consensus       296 ~  296 (352)
                      +
T Consensus       130 ~  130 (144)
T 2f06_A          130 E  130 (144)
T ss_dssp             H
T ss_pred             H
T ss_conf             8


No 15 
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978}
Probab=67.61  E-value=6.6  Score=18.88  Aligned_cols=39  Identities=10%  Similarity=0.147  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             899999999997299747999726981324989999999
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVL  166 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll  166 (352)
                      -+++.++++.+.++++++=|||||..+---+-..|.++.
T Consensus        34 ~~~l~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~   72 (266)
T 3fdu_A           34 YLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFM   72 (266)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHH
T ss_conf             999999999997589946999978984251573166654


No 16 
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=65.22  E-value=4.1  Score=20.32  Aligned_cols=27  Identities=11%  Similarity=0.133  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -.++..+++.+..+++|+=|||+|..+
T Consensus        33 ~~el~~~l~~~~~d~~v~~vVl~g~g~   59 (263)
T 3lke_A           33 GTSLLEAIRAGNNETSIHSIILQSKHR   59 (263)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEEEEESCT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             999999999985099957999963898


No 17 
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=65.16  E-value=3.1  Score=21.24  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             8999999999972997479997269813
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL  155 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl  155 (352)
                      ..++.++++.+.++++++=|||||+++-
T Consensus        33 ~~~l~~~l~~~~~d~~v~~vVltg~g~~   60 (275)
T 1dci_A           33 WRELVECFQKISKDSDCRAVVVSGAGKM   60 (275)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEESTTC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             9999999999975899679999678987


No 18 
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1
Probab=63.60  E-value=7.8  Score=18.36  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=27.7

Q ss_pred             HHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999999998798982327986234578899999999999869824230113457652101186999999999
Q gi|254781065|r  224 IAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVA  295 (352)
Q Consensus       224 ~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~  295 (352)
                      .+++....++|     ++|.+-.-|-+...-..+.......|+..+ ++         +|.+|.+.+++-..
T Consensus       266 ~~~~~~~L~~g-----~sVViD~Tn~~~~~R~~~i~lA~~~g~~v~-~v---------~~~~~~e~~~~rn~  322 (383)
T 1yj5_A          266 VSSCQAALRQG-----KRVVIDNTNPDVPSRARYIQCAKDAGVPCR-CF---------NFCATIEQARHNNR  322 (383)
T ss_dssp             HHHHHHHHHTT-----CCEEEESCCCSHHHHHHHHHHHHHHTCCEE-EE---------EECCCHHHHHHHHH
T ss_pred             HHHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHCCCEEE-EE---------EECCCHHHHHHHHH
T ss_conf             99999999779-----909997999999999999999998698499-99---------97799999999999


No 19 
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=63.39  E-value=7.9  Score=18.34  Aligned_cols=97  Identities=11%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HHHHHHHHHCCCEEEEEEEC-----------------CCCCCC--CH--HHHHHHHHHHHCCCCCEEEEEE-----CCEE
Q ss_conf             99999997299747999726-----------------981324--98--9999999998619981289874-----3435
Q gi|254781065|r  132 EAALAYIQEKSQIWEVIFTG-----------------GDPLIL--SH--KRLQKVLKTLRYIKHVQILRFH-----SRVP  185 (352)
Q Consensus       132 ~~~~~Yi~~~~eI~eVilSG-----------------GDPl~l--~~--~~L~~ll~~L~~i~hv~~IRi~-----TR~p  185 (352)
                      .+..+|+++||.|..|.--|                 |--++.  ..  +....++      +.++.++++     ++.+
T Consensus       272 ~~lA~~L~~hp~V~~V~yPgl~s~~~~~l~~~~~~~~g~~~sf~l~~~~~~a~~f~------~~l~l~~~a~SlGg~~SL  345 (404)
T 1e5e_A          272 MKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLL------DNLKLITLAVSLGGCESL  345 (404)
T ss_dssp             HHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHH------HTCSSSEESSCCCSSSCE
T ss_pred             HHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH------HHCCCCEEEECCCCCCCE
T ss_conf             99999986089951742677778525999997452588555788629899999999------828836153247876505


Q ss_pred             EEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCC
Q ss_conf             6343433-----999999986259938999336995886999999999999879
Q gi|254781065|r  186 IVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAG  234 (352)
Q Consensus       186 v~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~G  234 (352)
                      +..|...     +++-.+...-...-+-+.+-+.++..|-.+..+|++++.++-
T Consensus       346 i~~pas~th~~~~~e~~~~~Gi~~~liRlSvGlEd~~DLi~Dl~~AL~a~~~~~  399 (404)
T 1e5e_A          346 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLRSH  399 (404)
T ss_dssp             EECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHCC-
T ss_pred             EECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             678500252229999999669893979999620999999999999999998520


No 20 
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=63.01  E-value=4.5  Score=20.08  Aligned_cols=43  Identities=23%  Similarity=0.108  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999998798982327------------9862345788999999999998
Q gi|254781065|r  221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE  263 (352)
Q Consensus       221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~  263 (352)
                      -|+.+||.=|+.+|.+-+.|.            |=-..=.=+.+.|..|+++|-.
T Consensus        21 iEA~eAC~WLRaaGFpqYAqlyEd~~FPIdi~~Vk~Dh~fLd~D~l~sL~RRL~t   75 (91)
T 2dky_A           21 IEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNT   75 (91)
T ss_dssp             HHHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9899999999982884899986504688251442357764047789999999999


No 21 
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.85  E-value=8.1  Score=18.27  Aligned_cols=53  Identities=13%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----CHHHHHHHH-HHHHCCCCCEEEEE
Q ss_conf             899999999997299747999726981324-----989999999-99861998128987
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL-----SHKRLQKVL-KTLRYIKHVQILRF  180 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l-----~~~~L~~ll-~~L~~i~hv~~IRi  180 (352)
                      .+..+...++++++|+|..+..||+.-+++     +.+.+..++ +.|..+|.|..++-
T Consensus        94 ~~~~~~v~~~l~~~peV~~~~~tG~~D~i~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t  152 (171)
T 2ia0_A           94 ERYISYISSTLSALPGVLFVAKSGEDKIIALVGKNNKDELVKFIEENITSIPNLKHIQI  152 (171)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEEEETTTEEEEEEEESSTTHHHHHHHHHTTTSTTEEEEEE
T ss_pred             CCCCHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             11002367788652308788864888699999979999999999997325989647999


No 22 
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=60.77  E-value=5.2  Score=19.63  Aligned_cols=27  Identities=11%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      ..++.++++.++++++|+=|||+|+..
T Consensus        55 ~~eL~~al~~~~~d~~vrvvvl~g~g~   81 (286)
T 3myb_A           55 LAALGEAFGTLAEDESVRAVVLAASGK   81 (286)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEECSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999997489956999956999


No 23 
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=57.93  E-value=9.7  Score=17.70  Aligned_cols=14  Identities=14%  Similarity=0.382  Sum_probs=6.1

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             57889999999999
Q gi|254781065|r  248 NDDPEILANLMRTF  261 (352)
Q Consensus       248 ND~~~~l~~L~~~L  261 (352)
                      +.+.+...+++.+|
T Consensus       305 ~~~~~~a~~f~~~l  318 (386)
T 1cs1_A          305 DGDEQTLRRFLGGL  318 (386)
T ss_dssp             SSCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHC
T ss_conf             69899999999708


No 24 
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=57.44  E-value=3.5  Score=20.83  Aligned_cols=43  Identities=23%  Similarity=0.113  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             999999999998798982327------------9862345788999999999998
Q gi|254781065|r  221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE  263 (352)
Q Consensus       221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~  263 (352)
                      -|+.+||+=|+.+|.+-+.|.            |=-..-.=|.+.+..|+++|-.
T Consensus        19 iEA~eAC~WLRaaGFpqYAqlyEd~~FPIdI~~VkkDh~fLd~Dsl~sL~RRL~t   73 (81)
T 2h80_A           19 IEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNT   73 (81)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9899999999983884899986603788403877137663167789999999999


No 25 
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3}
Probab=57.14  E-value=2.2  Score=22.29  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      -.++.++++.+.++++++=|||||.
T Consensus        46 ~~el~~al~~~~~d~~v~~vVitg~   70 (279)
T 3g64_A           46 YADLRDLLAELSRRRAVRALVLAGE   70 (279)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999999960999579999479


No 26 
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=56.15  E-value=10  Score=17.50  Aligned_cols=185  Identities=17%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC--------CC---CCEEEEEECCEEEEEHHHCC
Q ss_conf             78989999999999729974799972698132498999999999861--------99---81289874343563434339
Q gi|254781065|r  125 VLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY--------IK---HVQILRFHSRVPIVDPQRIN  193 (352)
Q Consensus       125 ~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~--------i~---hv~~IRi~TR~pv~~P~Rit  193 (352)
                      .++.++.++.++-+.+...|. ++-.|++-..++...++.+...+.+        -|   -+..-.+-+|.+-.+|.++-
T Consensus        28 ~l~~~~~~~~L~~l~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~H~~~P~~~G~~~~eL~~~l~~~~~~~~~  106 (258)
T 1lva_A           28 SLSLEETRKLLQSMAAAGQVT-LLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVY  106 (258)
T ss_dssp             TCCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCEE-EEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHH
T ss_conf             989999999999988579779-9955894599879999999999999999999968776798999999762312789999


Q ss_pred             HHHHHHHHHCCCCEE----EEECCCCHHHCCHHHHHHHH----HHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999999862599389----99336995886999999999----9998798982327986234578899999999999869
Q gi|254781065|r  194 PELIQCLKEAGKPVY----IAIHANHPYEFSEEAIAAIS----RLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR  265 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~----iv~H~NHp~Elt~~~~~A~~----~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g  265 (352)
                      +.+++.|.+.+. +.    ++...+|-..++++..+...    .+.++|...-.=.=+.+..|=+...+.++.+.|.+.|
T Consensus       107 ~~lL~~L~~~g~-l~~~~~~v~l~~~~~~l~~~~~~~~~~i~~~l~~~g~~pp~~~el~~~l~~~~~~~~~~l~~l~~~g  185 (258)
T 1lva_A          107 QALLEEWSREGR-LQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREG  185 (258)
T ss_dssp             HHHHHHHHHTTS-EEEETTEEEETTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCC-EEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             999999986898-7986999975787777899999999999999997699999889999894989899999999999689


Q ss_pred             CEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCE
Q ss_conf             82423011345765210118-69999999999998288865410663178888823
Q gi|254781065|r  266 IKPYYLHHPDLAAGTSHFRL-TIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKV  320 (352)
Q Consensus       266 V~PYYl~~~d~v~G~~hf~v-~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv  320 (352)
                      ..=       .+.+.-+|.. .++++.++++.+.. -.++.+ .-..|+-|-+=|.
T Consensus       186 ~lv-------~i~~~~~~~~~~~~~~~~~l~~l~~-~~~itv-~~~rd~~g~SRK~  232 (258)
T 1lva_A          186 VLV-------KINDEFYWHRQALGEAREVIKNLAS-TGPFGL-AEARDALGSSRKY  232 (258)
T ss_dssp             SEE-------ESSSSBEEEHHHHHHHHHHHHHHHT-TSCBCH-HHHHHHHTCCHHH
T ss_pred             CEE-------EECCCEEECHHHHHHHHHHHHHHHH-CCCCCH-HHHHHHHCCCHHH
T ss_conf             769-------8279889979999999999997887-498749-9999887987999


No 27 
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A
Probab=55.47  E-value=11  Score=17.42  Aligned_cols=41  Identities=15%  Similarity=0.163  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             89999999999729974799972698132498999999999
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKT  168 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~  168 (352)
                      -+++.++++.+.++++++=|||||..+.--+-..|+++...
T Consensus        32 ~~el~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~   72 (243)
T 2q35_A           32 VEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRK   72 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCC
T ss_conf             99999999999769896799997889844798844544202


No 28 
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=54.35  E-value=11  Score=17.30  Aligned_cols=130  Identities=17%  Similarity=0.237  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHC--CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHH---HC
Q ss_conf             9999999999729--974799972698132498999999999861998128987434356343433999999986---25
Q gi|254781065|r  129 KDTEAALAYIQEK--SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLK---EA  203 (352)
Q Consensus       129 ~~~~~~~~Yi~~~--~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~---~~  203 (352)
                      ..+++++..+++.  .+=-|||+|.|     ++   ..+|.+--.+| |-.|.+..           -++++.|.   ++
T Consensus        46 ~~~edav~~~~~~~~~~~~DviISRG-----~t---a~~Ir~~~~iP-VVeI~vs~-----------~Dil~aL~~a~~~  105 (225)
T 2pju_A           46 LGFEKAVTYIRKKLANERCDAIIAAG-----SN---GAYLKSRLSVP-VILIKPSG-----------YDVLQFLAKAGKL  105 (225)
T ss_dssp             CCHHHHHHHHHHHTTTSCCSEEEEEH-----HH---HHHHHTTCSSC-EEEECCCH-----------HHHHHHHHHTTCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEECC-----HH---HHHHHHHCCCC-EEEEECCH-----------HHHHHHHHHHHHH
T ss_conf             74789999999998649986999685-----68---99999858998-89970787-----------6899999999975


Q ss_pred             CCCEEEEECCCCHHHC------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9938999336995886------------------9999999999998798982327986234578899999999999869
Q gi|254781065|r  204 GKPVYIAIHANHPYEF------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR  265 (352)
Q Consensus       204 ~~~~~iv~H~NHp~El------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g  265 (352)
                      +.++.++.+-|-..++                  ..++.++++.+++.|+.+.-=..+          ..++   --++|
T Consensus       106 ~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG~~~----------~~~~---A~~~G  172 (225)
T 2pju_A          106 TSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL----------ITDL---AEEAG  172 (225)
T ss_dssp             TSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHH----------HHHH---HHHTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHH----------HHHH---HHHCC
T ss_conf             8988999376403699999999699449999668899999999999869979998858----------9999---99849


Q ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             82423011345765210118699999999999
Q gi|254781065|r  266 IKPYYLHHPDLAAGTSHFRLTIEEGQKIVASL  297 (352)
Q Consensus       266 V~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l  297 (352)
                      +....++-     | .--+--+++|+++.+..
T Consensus       173 l~~vli~S-----g-eSI~~Ai~~Al~~ar~~  198 (225)
T 2pju_A          173 MTGIFIYS-----A-ATVRQAFSDALDMTRMS  198 (225)
T ss_dssp             SEEEESSC-----H-HHHHHHHHHHHHHHHHC
T ss_pred             CCEEEECC-----H-HHHHHHHHHHHHHHHHH
T ss_conf             97899758-----8-99999999999999999


No 29 
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=53.79  E-value=11  Score=17.24  Aligned_cols=63  Identities=19%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCC--CHHH--------------HHHHHHHHHCCCCCEEEEEECCE--EE
Q ss_conf             9899999999997299747999726--981324--9899--------------99999998619981289874343--56
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTG--GDPLIL--SHKR--------------LQKVLKTLRYIKHVQILRFHSRV--PI  186 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSG--GDPl~l--~~~~--------------L~~ll~~L~~i~hv~~IRi~TR~--pv  186 (352)
                      +..++++.+..|.+|+.|..+|+-.  |-|+--  .++.              -...+..|..-+.+..+|+.||-  .+
T Consensus        10 ~msevEetl~RI~~~kgV~G~iIln~~G~pirst~d~~~a~~yA~~~~~l~~~Ar~~vrdlDp~deL~~LRiRTkk~Ei~   89 (106)
T 2hz5_A           10 SMAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIM   89 (106)
T ss_dssp             -----CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEE
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
T ss_conf             39999999999855999469999979999888817818899999999999999999998379877679999861884899


Q ss_pred             EEH
Q ss_conf             343
Q gi|254781065|r  187 VDP  189 (352)
Q Consensus       187 ~~P  189 (352)
                      +.|
T Consensus        90 IaP   92 (106)
T 2hz5_A           90 VAP   92 (106)
T ss_dssp             EEC
T ss_pred             EEC
T ss_conf             975


No 30 
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A
Probab=53.06  E-value=12  Score=17.16  Aligned_cols=32  Identities=13%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH
Q ss_conf             89999999999729974799972698132498
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH  159 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~  159 (352)
                      -.++.++++.+.++++++=|||||+.+...+.
T Consensus        34 ~~~l~~~l~~~~~d~~~~~vvl~~~~~~f~~g   65 (258)
T 2pbp_A           34 VAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG   65 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESTTEEECC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCEECC
T ss_conf             99999999998609985899990798640127


No 31 
>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A*
Probab=52.53  E-value=8  Score=18.31  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      ..++.++++.++++++++=|||+|.
T Consensus        41 ~~~l~~al~~~~~d~~v~~vvl~g~   65 (272)
T 2iex_A           41 VNEMIDAFTKARDDSNIGVIILTGA   65 (272)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999999861999559998437


No 32 
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=51.24  E-value=12  Score=17.10  Aligned_cols=106  Identities=8%  Similarity=0.074  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC------------HHHHHHHHHHHHCCCCC-------------------E
Q ss_conf             8999999999972997479997269813249------------89999999998619981-------------------2
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS------------HKRLQKVLKTLRYIKHV-------------------Q  176 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~------------~~~L~~ll~~L~~i~hv-------------------~  176 (352)
                      ..++..+++.++++++|+=|||+|++.-..+            ......+...+...+-.                   -
T Consensus        35 ~~~l~~~l~~~~~d~~v~~vVl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~  114 (255)
T 3p5m_A           35 LEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALAC  114 (255)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHC
T ss_conf             99999999999749992799996667653357743012223431257799999981999899997898873778998737


Q ss_pred             EEEEEC-CEEEEEHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHHHHHHH
Q ss_conf             898743-43563434-----------------3399999998625993--------899933699588699999999999
Q gi|254781065|r  177 ILRFHS-RVPIVDPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIAAISRL  230 (352)
Q Consensus       177 ~IRi~T-R~pv~~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~A~~~L  230 (352)
                      .+||.| ..-..+|+                 ++.......+--.++.        .-++.++--+.|+.+++.+..+++
T Consensus       115 D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~vv~~~~l~~~a~~~a~~i  194 (255)
T 3p5m_A          115 DLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSV  194 (255)
T ss_dssp             SEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHH
T ss_pred             CEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf             88997899889677204064655576324554454310021111378788999987699348818279999999999999


Q ss_pred             HHC
Q ss_conf             987
Q gi|254781065|r  231 ANA  233 (352)
Q Consensus       231 ~~~  233 (352)
                      .+.
T Consensus       195 a~~  197 (255)
T 3p5m_A          195 SGG  197 (255)
T ss_dssp             HTS
T ss_pred             HCC
T ss_conf             669


No 33 
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=50.91  E-value=12  Score=17.07  Aligned_cols=27  Identities=15%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      .+++.++++.+.++++|+=|||||+.+
T Consensus        34 ~~~l~~~l~~~~~d~~vr~vvl~g~g~   60 (261)
T 3pea_A           34 MHDVTELIDQVEKDDNIRVVVIHGEGR   60 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESTT
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             999999999998688928999948999


No 34 
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=50.18  E-value=11  Score=17.44  Aligned_cols=26  Identities=12%  Similarity=0.142  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf             899999999997299747999726-98
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG-GD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD  153 (352)
                      -+++..+++.+.++++++=|||+| |+
T Consensus        41 ~~el~~~l~~~~~d~~~~~vVl~g~g~   67 (272)
T 1hzd_A           41 IKMLSKAVDALKSDKKVRTIIIRSEVP   67 (272)
T ss_dssp             HHHHHHHHHHHHHCSSCSEEEEEESBT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999998599964999962788


No 35 
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=49.83  E-value=9.9  Score=17.65  Aligned_cols=17  Identities=6%  Similarity=0.032  Sum_probs=7.9

Q ss_pred             CEEECCCEEEEEECCCC
Q ss_conf             14520753799972743
Q gi|254781065|r   89 IVHRYPDRILLKLLHVC  105 (352)
Q Consensus        89 l~hkY~~rvLl~~t~~C  105 (352)
                      +.|++..-+++.+.++.
T Consensus       192 ~a~~~~~g~~~vVDnT~  208 (415)
T 2fq6_A          192 AVRSVVPDAIIMIDNTW  208 (415)
T ss_dssp             HHHHHCTTCEEEEECTT
T ss_pred             HHHHCCCCCEEEEECCC
T ss_conf             98751579779997786


No 36 
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=49.65  E-value=13  Score=16.80  Aligned_cols=152  Identities=14%  Similarity=0.171  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC---
Q ss_conf             99999999997299747999726981324989999999998619981289874343563434339999999862599---
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK---  205 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~---  205 (352)
                      +..+..+++.++...  =++|++|||++.+.  ..+++..+.+.. +. ++       +.|- |+. ........+.   
T Consensus        81 e~~~~~~~~~~~G~~--V~~L~~GDP~~y~~--~~~l~~~~~~~~-i~-ve-------vVPG-ISS-~~aaaa~~g~plt  145 (285)
T 1cbf_A           81 EMVGTMLDRMREGKM--VVRVHTGDPAMYGA--IMEQMVLLKREG-VD-IE-------IVPG-VTS-VFAAAAAAEAELT  145 (285)
T ss_dssp             HHHHHHHHHHTTTCC--EEEEESBCTTTTCC--CHHHHHHHHHTT-CE-EE-------EECC-CCH-HHHHHHHTTCCSC
T ss_pred             HHHHHHHHHHHCCCE--EEEEECCCCCCCCC--HHHHHHHHHHCC-CE-EE-------ECCC-CCH-HHHHCCCCCCCCC
T ss_conf             999999999978997--99993888663165--899999999779-75-99-------8388-404-5442013477434


Q ss_pred             ------CEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-EECCC--C
Q ss_conf             ------38999336995886999999999999879898232798623457889999999999986982423-01134--5
Q gi|254781065|r  206 ------PVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY-LHHPD--L  276 (352)
Q Consensus       206 ------~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY-l~~~d--~  276 (352)
                            .+.+.+.  |..+-.++ .+.+..+.+.+-++    |++++.+.    +.++.+.|.+.|..|.. +..+.  -
T Consensus       146 ~~~~~~~~~~~~~--~g~~~~~~-~~~l~~l~~~~~tl----vi~~~~~~----~~~i~~~L~~~g~~~dtpv~vv~~~~  214 (285)
T 1cbf_A          146 IPDLTQTVILTRA--EGRTPVPE-FEKLTDLAKHKCTI----ALFLSSTL----TKKVMKEFINAGWSEDTPVVVVYKAT  214 (285)
T ss_dssp             BTTTBCCEEEEEC--CSSSCCCG-GGCHHHHHTTCSEE----EEESCTTC----HHHHHHHHHHTTCCTTCEEEEEESTT
T ss_pred             CCCCCCEEEEEEC--CCCCCCCH-HHHHHHHHCCCCEE----EEEECCCC----HHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf             4532416999815--78766611-77899985369889----99976655----79999999964999998899999599


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             76521011869999999999998288865410663
Q gi|254781065|r  277 AAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYIL  311 (352)
Q Consensus       277 v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~  311 (352)
                      .+...-++.++++--+.++.     .|+..|..++
T Consensus       215 ~~~E~i~~~TL~el~e~~~~-----~~~~~p~liv  244 (285)
T 1cbf_A          215 WPDEKIVRTTVKDLDDAMRT-----NGIRKQAMIL  244 (285)
T ss_dssp             STTCEEEEEEGGGHHHHHHH-----TTCCSSEEEE
T ss_pred             CCCCEEEEEEHHHHHHHHHH-----CCCCCCEEEE
T ss_conf             58828999899999999997-----5999988999


No 37 
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=48.73  E-value=13  Score=16.70  Aligned_cols=173  Identities=13%  Similarity=0.104  Sum_probs=85.5

Q ss_pred             CEEEEEEE-CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-----CCEEEEEHH-HC---CHHHHHHHHHCC----CCE-
Q ss_conf             74799972-6981324989999999998619981289874-----343563434-33---999999986259----938-
Q gi|254781065|r  143 QIWEVIFT-GGDPLILSHKRLQKVLKTLRYIKHVQILRFH-----SRVPIVDPQ-RI---NPELIQCLKEAG----KPV-  207 (352)
Q Consensus       143 eI~eVilS-GGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~-----TR~pv~~P~-Ri---t~~L~~~l~~~~----~~~-  207 (352)
                      ++.++=+. ++|+. ++...-..+|..|..=-....-+-.     -++-|.++. +|   -.++.+++.+.-    .++ 
T Consensus        82 ~~~~~~~~~~~~~~-~~~~~a~~ll~~L~~G~~~t~~~~~~~~~~~~v~v~ls~v~f~~~y~~f~~C~~~Llp~~f~~i~  160 (278)
T 2zf8_A           82 RITNLKFFKQFDGY-VGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDCISNLLKYSFEDIA  160 (278)
T ss_dssp             TCCEEEEEEEECSE-EESHHHHHHHHHHHHTCCCEEEBCCSSSSCCEEEEBCCCSSHHHHHHHHHHHHHTSCSCSSTTSE
T ss_pred             CCCEEEEECCCCCC-CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf             54144431467732-23644899999997899016723044577861799737300577778899999746798978812


Q ss_pred             EEEECCCCH-HHCCHHHHHHHHHHHHCCCEEEE-CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             999336995-88699999999999987989823-2798623457889999999999986982423011345765210118
Q gi|254781065|r  208 YIAIHANHP-YEFSEEAIAAISRLANAGIILLS-QSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL  285 (352)
Q Consensus       208 ~iv~H~NHp-~Elt~~~~~A~~~L~~~Gv~v~n-QsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v  285 (352)
                      ..+++|.-= .+|+++.++.+.++.+.=-.--+ ..|++.|--|+...                         -.....+
T Consensus       161 ~t~v~F~~gs~~L~~~~~~~L~~ia~~Lk~~p~~~~I~I~GhTD~~G~-------------------------~~~N~~L  215 (278)
T 2zf8_A          161 FTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDG-------------------------KSASQSL  215 (278)
T ss_dssp             EEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC--------------------------------CCCHHH
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC-------------------------HHHHHHH
T ss_conf             277984899732799999999999999986899657999988289997-------------------------6888999


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCHHHEE--ECCCEEEEECCCCCEE
Q ss_conf             69999999999998288865410663178888823555102123--1398799981699887
Q gi|254781065|r  286 TIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKVKIDTHNIKK--VGNGSYCITDHHNIVH  345 (352)
Q Consensus       286 ~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~--~~~~~~~l~~~~g~~~  345 (352)
                      +.++|..+.+.|...  |+..-+..  +-|-|..-|+.++....  ..+.++.++-...+++
T Consensus       216 S~~RA~~V~~~L~~~--GI~~~rI~--v~g~Ge~~Pi~~n~t~~~r~~NRRVeI~l~r~ev~  273 (278)
T 2zf8_A          216 SERRAESLRDYFQSL--GLPEDRIQ--VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQVH  273 (278)
T ss_dssp             HHHHHHHHHHHHHHH--SCCTTSEE--CCEEC------------------CEEEECCCCC--
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHEE--EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEEE
T ss_conf             999999999999985--99979999--99975657779994978997349799999736973


No 38 
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=48.06  E-value=6.9  Score=18.76  Aligned_cols=11  Identities=18%  Similarity=0.525  Sum_probs=6.6

Q ss_pred             EEEEECCCCHH
Q ss_conf             89993369958
Q gi|254781065|r  207 VYIAIHANHPY  217 (352)
Q Consensus       207 ~~iv~H~NHp~  217 (352)
                      =++.+||-.|-
T Consensus       446 r~~g~HffnP~  456 (715)
T 1wdk_A          446 NFVGMHFFNPV  456 (715)
T ss_dssp             GEEEEECCSST
T ss_pred             EEEEEECCCCH
T ss_conf             05885114861


No 39 
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A*
Probab=48.00  E-value=14  Score=16.63  Aligned_cols=49  Identities=10%  Similarity=-0.015  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999986982423011345765210118699999999999982
Q gi|254781065|r  252 EILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK  300 (352)
Q Consensus       252 ~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~  300 (352)
                      .....+.+.|...|+.+=-+..-|-..=..+=+++-..-.++...+...
T Consensus       322 ~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~nriSp~~l~~lL~~~~~~  370 (489)
T 1w79_A          322 AGLVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAGSA  370 (489)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTCBBCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999999999865898567477058878866665999999999998859


No 40 
>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium}
Probab=47.77  E-value=8.4  Score=18.13  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      -.++.++++.++++++++=|||+|+
T Consensus        56 ~~eL~~~l~~~~~d~~v~~vVl~g~   80 (288)
T 3h02_A           56 VKEMIQALADARYDDNVGVIILTGE   80 (288)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999999999973999668999879


No 41 
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=47.67  E-value=14  Score=16.59  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             999999999972997479997-26981324-----98999999999861998128987
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKTLRYIKHVQILRF  180 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi  180 (352)
                      +.+++..++++++|+|.++-. ||+.-+.+     +.+.+..++++|.+++.|..++-
T Consensus        98 ~~~~~~~~~l~~~p~V~~~~~vtG~~dl~~~v~~~~~~~l~~~i~~l~~~~gV~~~~t  155 (171)
T 2e1c_A           98 GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHT  155 (171)
T ss_dssp             TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEE
T ss_pred             CCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             4058999999759987899994178878999998999999999999836899749999


No 42 
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=47.67  E-value=11  Score=17.23  Aligned_cols=25  Identities=20%  Similarity=0.497  Sum_probs=10.5

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             7479997269813249899999999986
Q gi|254781065|r  143 QIWEVIFTGGDPLILSHKRLQKVLKTLR  170 (352)
Q Consensus       143 eI~eVilSGGDPl~l~~~~L~~ll~~L~  170 (352)
                      .+++++++||   +.+|..|++.+..+.
T Consensus       249 ~~k~lvvsGG---VAaN~~LR~~l~~~~  273 (334)
T 3eno_A          249 GKDEILMAGG---VALNRRLRDMVTNMA  273 (334)
T ss_dssp             TCSEEEEESS---GGGCHHHHHHHHHHH
T ss_pred             CCCEEEECCC---HHHHHHHHHHHHHHH
T ss_conf             8880541485---778899999999999


No 43 
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=46.81  E-value=14  Score=16.50  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCC--HH---HHH-----------HHHHHHHCCCCCEEEEEECCE
Q ss_conf             99999999997299747999726--9813249--89---999-----------999998619981289874343
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTG--GDPLILS--HK---RLQ-----------KVLKTLRYIKHVQILRFHSRV  184 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSG--GDPl~l~--~~---~L~-----------~ll~~L~~i~hv~~IRi~TR~  184 (352)
                      .++++.+..|.+|+.+..+++..  |.|+--+  +.   +..           ..+..|..-+.+..+|+.||-
T Consensus         3 ~evEetl~ri~~~kgV~G~iI~n~~G~pirst~d~~~~~~yA~~~~~l~~~A~~~vr~lDp~del~~lRiRTkk   76 (97)
T 3l7h_A            3 QEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKK   76 (97)
T ss_dssp             ------CHHHHTSTTEEEEEEEETTSCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESS
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             79999999985599944999997999876883785789999999999999999999707986766999986187


No 44 
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=46.63  E-value=14  Score=16.48  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             999999999972997479997269813
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPL  155 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl  155 (352)
                      .++.++++-+.++++|+=|||||++..
T Consensus        37 ~~L~~~l~~~~~d~~v~~vvl~g~g~~   63 (260)
T 1mj3_A           37 EELNQALETFEEDPAVGAIVLTGGEKA   63 (260)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEECCSSE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             999999999985899079999779995


No 45 
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=45.91  E-value=15  Score=16.41  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=27.1

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf             997479997269813249899999999986199812
Q gi|254781065|r  141 KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ  176 (352)
Q Consensus       141 ~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~  176 (352)
                      ...++++++|||   +.+|..|.+.++.+.+-..++
T Consensus       246 ~~~~~~lvvsGG---VaaN~~LR~~l~~~~~~~~~~  278 (540)
T 3en9_A          246 HTNKGEVMLVGG---VAANNRLREMLKAMCEGQNVD  278 (540)
T ss_dssp             HHTCSEEEEESG---GGGCHHHHHHHHHHHHHTTCE
T ss_pred             HHCCCEEEEECC---HHHHHHHHHHHHHHHHHCCCE
T ss_conf             709297999854---999899999999999876999


No 46 
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=45.42  E-value=15  Score=16.36  Aligned_cols=103  Identities=15%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             EEEECCCCCCC-----------CHHHHHHHHHHHHC-----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEE
Q ss_conf             99726981324-----------98999999999861-----998128987434356343433999999986259938999
Q gi|254781065|r  147 VIFTGGDPLIL-----------SHKRLQKVLKTLRY-----IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIA  210 (352)
Q Consensus       147 VilSGGDPl~l-----------~~~~L~~ll~~L~~-----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv  210 (352)
                      +|+++|+|+..           +...+..+++.|.+     =..++.+.++...    =.+..+++.+.+++.-.+    
T Consensus        15 lLFas~~pls~~~la~~~~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~g~----~l~tk~e~~~~v~~l~~~----   86 (162)
T 1t6s_A           15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGY----RFLTEPEFADLVRQLLAP----   86 (162)
T ss_dssp             HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEE----EEEECGGGHHHHHHHHSC----
T ss_pred             HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEE----EEEECHHHHHHHHHHCCC----
T ss_conf             997638988999999986658999999999999999987179856999968988----999778888999985266----


Q ss_pred             ECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3369958869999999999998798982327986234578899999999999869
Q gi|254781065|r  211 IHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR  265 (352)
Q Consensus       211 ~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g  265 (352)
                         .-+.+|+..+.+.+.-+.-.+-.-..+-.-++|||-+.. +.+    |++.|
T Consensus        87 ---~~~~~LS~aalEtLAiIAy~QPitr~eI~~iRGv~s~~~-l~~----L~~~g  133 (162)
T 1t6s_A           87 ---VIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYS-IDR----LLARG  133 (162)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCCCSH-HHH----HHHTT
T ss_pred             ---CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH-HHH----HHHCC
T ss_conf             ---444656999999999999629958999999978883669-999----99869


No 47 
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=45.11  E-value=15  Score=16.33  Aligned_cols=68  Identities=7%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             999999862599389993369958869999999999998798982327986234578899999999999869824
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP  268 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P  268 (352)
                      +.+++.+.+..+.+++.+ +...   .++..+|+....+.||.|.   +|+.+-.+....-....+.|...||.-
T Consensus        17 ~~i~~~I~~A~~~I~i~~-y~~~---~~~i~~aL~~a~~rGV~Vr---vl~d~~~~~~~~~~~~~~~l~~~gi~v   84 (155)
T 1byr_A           17 VLVLSAIDSAKTSIRMMA-YSFT---APDIMKALVAAKKRGVDVK---IVIDERGNTGRASIAAMNYIANSGIPL   84 (155)
T ss_dssp             HHHHHHHHHCSSEEEEEE-SSBC---CHHHHHHHHHHHHTTCEEE---EEEESTTCCSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCEEEEEE-EECC---CHHHHHHHHHHHHCCCEEE---EEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf             999999996072999999-8427---8899999999998599399---999723753203399999998458874


No 48 
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=45.00  E-value=15  Score=16.32  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCH----HHHHHHHHCC
Q ss_conf             99999999972-997479997269813249899999999986199812898743435634343399----9999986259
Q gi|254781065|r  130 DTEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP----ELIQCLKEAG  204 (352)
Q Consensus       130 ~~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~----~L~~~l~~~~  204 (352)
                      ++++.++.+++ ++.++++=|++-+.  ++++.+..+.+.|..-.+++.+.+.--       ++++    .|+++|+...
T Consensus        28 ~~~e~l~~l~~n~~~L~~LnLnn~~~--i~~~~~~~l~~aL~~N~~L~~L~Ls~n-------~l~d~~~~~La~~L~~n~   98 (197)
T 1pgv_A           28 DVESCINRLREDDTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSP   98 (197)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCS
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHCCCCCEEEECCC-------CCCHHHHHHHHHHHHHCC
T ss_conf             59999999995899873997759999--899999999999954894067870699-------884399999999998473


Q ss_pred             CCEEEEECCCCHHHCCHHHHHHHHHHHH
Q ss_conf             9389993369958869999999999998
Q gi|254781065|r  205 KPVYIAIHANHPYEFSEEAIAAISRLAN  232 (352)
Q Consensus       205 ~~~~iv~H~NHp~Elt~~~~~A~~~L~~  232 (352)
                      .=-.+....|   .++++...++.....
T Consensus        99 ~L~~L~L~~n---~i~~~g~~~L~~aL~  123 (197)
T 1pgv_A           99 SLRVLNVESN---FLTPELLARLLRSTL  123 (197)
T ss_dssp             SCCEEECCSS---BCCHHHHHHHHHHTT
T ss_pred             HHHEEECCCC---CCCCHHHHHHHHHHH
T ss_conf             5351220678---776689999999997


No 49 
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp}
Probab=45.00  E-value=15  Score=16.32  Aligned_cols=28  Identities=4%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             8999999999972997479997269813
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL  155 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl  155 (352)
                      -.++.++++.++++++|+=|||||+++.
T Consensus        33 ~~~l~~~l~~~~~d~~v~~vVl~g~~~~   60 (268)
T 3i47_A           33 LTEMRIRLDSAINDTNVRVIVLKANGKH   60 (268)
T ss_dssp             HHHHHHHHHHHHHCTTCSEEEEEECSSC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             9999999999974999069999167776


No 50 
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=44.89  E-value=15  Score=16.30  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             899999999997299747999726
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG  151 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG  151 (352)
                      -.++.++++.+.++++|+=|||||
T Consensus        28 ~~el~~~l~~~~~d~~v~~vvi~g   51 (253)
T 1uiy_A           28 ALSLLQALDDLEADPGVRAVVLTG   51 (253)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999999997399965999978


No 51 
>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn}
Probab=43.96  E-value=16  Score=16.21  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             HHHHHHHHH-C-CCEEEEEEECCCCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE
Q ss_conf             999999972-9-974799972698132-4989999999998619981289874343563434339999999862599389
Q gi|254781065|r  132 EAALAYIQE-K-SQIWEVIFTGGDPLI-LSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY  208 (352)
Q Consensus       132 ~~~~~Yi~~-~-~eI~eVilSGGDPl~-l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~  208 (352)
                      ..+.+|+.+ . ...+ |++-+|.+-. ....+.+.+.+.+++-+.++.+-..+..  ..++.....+.++|.+++..+-
T Consensus       123 ~~~a~~l~~~~~~~~~-v~~~~g~~~~~~~~~R~~g~~~~l~~~~~~~i~~~~~~~--~~~~~a~~~~~~~L~~~~p~i~  199 (332)
T 2rjo_A          123 EETATQLFKSMGGKGG-VVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIK  199 (332)
T ss_dssp             HHHHHHHHHHTTTCEE-EEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEE
T ss_pred             HHHHHHHHHHCCCCEE-EEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCE
T ss_conf             9999988874499528-995788876447999999999999878997367666223--2106899999999973776651


Q ss_pred             EEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHH
Q ss_conf             99336995886999999999999879898232798623457889999999
Q gi|254781065|r  209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM  258 (352)
Q Consensus       209 iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~  258 (352)
                      .+.-.|     +..+..+++.++++|..   .-+.+-|++++.+.+..+-
T Consensus       200 ~I~~~n-----d~~a~g~~~al~~~g~~---~~i~vvG~D~~~~~~~~i~  241 (332)
T 2rjo_A          200 GVWAAN-----DDMALGAIEALRAEGLA---GQIPVTGMDGTQPGLVAIK  241 (332)
T ss_dssp             EEEESS-----HHHHHHHHHHHHHTTCB---TTBCEECSBCCHHHHHHHH
T ss_pred             EEEECC-----CHHHHHHHHHHHHCCCC---CCCEEEEECCCHHHHHHHH
T ss_conf             999679-----78999999999976999---9928999899799999997


No 52 
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=42.11  E-value=17  Score=16.02  Aligned_cols=141  Identities=13%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCEEEEEHHHCCHHHHHHHHH------
Q ss_conf             99999999972997479997269813249899999999986199-81289874343563434339999999862------
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK-HVQILRFHSRVPIVDPQRINPELIQCLKE------  202 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~------  202 (352)
                      .....+...++..  +=|++++|||++.+.  ..++++.+++.. .++          +.|- ++.  ......      
T Consensus        66 ~~~~~~~~~~~~~--~V~~l~~GDP~~~~~--~~~l~~~~~~~~i~v~----------vvPG-iS~--~~Aaaa~~~~~~  128 (265)
T 2z6r_A           66 NFENIVLPLAKEN--DVAFLTPGDPLVATT--HAELRIRAKRAGVESY----------VIHA-PSI--YSAVGITGLHIY  128 (265)
T ss_dssp             HHHHHTHHHHTTS--CEEEEESBCTTSSSS--THHHHHHHHHTTCCEE----------EECC-CCH--HHHGGGGTCCGG
T ss_pred             HHHHHHHHHHCCC--CEEEEECCCCCCCCC--HHHHHHHHHHCCCCEE----------EECC-CHH--HHHHHHHCCCCC
T ss_conf             9999999996699--889995799888880--9999999998699679----------8047-319--999998379766


Q ss_pred             -CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE--EEEC----HHHHHCCCCCHHHHHHHHHHHHHCCCEE---EEEE
Q ss_conf             -5993899933699588699999999999987989--8232----7986234578899999999999869824---2301
Q gi|254781065|r  203 -AGKPVYIAIHANHPYEFSEEAIAAISRLANAGII--LLSQ----SVLLKGINDDPEILANLMRTFVELRIKP---YYLH  272 (352)
Q Consensus       203 -~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~--v~nQ----sVLLkgVND~~~~l~~L~~~L~~~gV~P---YYl~  272 (352)
                       .+..+.+.  +-...-......+.+......|..  ++..    .+.--.++.-...|.++.+.+...|.-|   -.+-
T Consensus       129 ~~~~~~s~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ei~~~l~~~g~~~dtpv~v~  206 (265)
T 2z6r_A          129 KFGKSATVA--YPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVL  206 (265)
T ss_dssp             GBCCCEEEC--CCBTTBCCCHHHHHHHHHHHTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEE
T ss_pred             CCCCEEEEE--EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             667438999--863686788615568889875986676553057633774099999999999999973699999908988


Q ss_pred             CCCCCCCCCCCCCCHHH
Q ss_conf             13457652101186999
Q gi|254781065|r  273 HPDLAAGTSHFRLTIEE  289 (352)
Q Consensus       273 ~~d~v~G~~hf~v~~~~  289 (352)
                      .---.....-+..++++
T Consensus       207 ~~~g~~dE~i~~gtL~e  223 (265)
T 2z6r_A          207 ARAGSLNPTIRAGYVKD  223 (265)
T ss_dssp             ESTTSSSCEEEEEEHHH
T ss_pred             EECCCCCCEEEEEEHHH
T ss_conf             88896983899989999


No 53 
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis}
Probab=42.09  E-value=17  Score=16.01  Aligned_cols=27  Identities=19%  Similarity=0.522  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -+++.++++.++++++|+=|||+|+++
T Consensus        37 ~~~L~~al~~~~~d~~vr~vVl~g~g~   63 (287)
T 3gkb_A           37 MRELRTVLTTLADDSSVRVIVFSSADP   63 (287)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEESSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999998689945999967898


No 54 
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=41.59  E-value=17  Score=15.96  Aligned_cols=146  Identities=18%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCE--
Q ss_conf             9999999972997479997269813249899999999986199-8128987434356343433999999986259938--
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK-HVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV--  207 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~--  207 (352)
                      -+.+++..++...|  |+|++|||+..+.  ..+++..+.+-. .++          +.|-- + .+...-...+.++  
T Consensus       283 ~~~l~~~~~~G~~V--a~l~~GDP~~ys~--~~~~~~~~~~~~i~ve----------VVPGI-S-S~~aaaA~~g~pl~~  346 (457)
T 1pjq_A          283 NQILLREAQKGKRV--VRLKGGDPFIFGR--GGEELETLCHAGIPFS----------VVPGI-T-AASGCSAYSGIPLTH  346 (457)
T ss_dssp             HHHHHHHHHTTCEE--EEEESBCTTTSSS--HHHHHTTTTTTTCCEE----------EECCC-C-HHHHHHHHTTCCSCC
T ss_pred             HHHHHHHHHCCCEE--EEEECCCCCCCHH--HHHHHHHHHHCCEEEE----------ECCCC-C-HHHHHHHHCCCCCCC
T ss_conf             99999999749859--9990688644166--9999998763783699----------74886-5-688999974997401


Q ss_pred             -----EEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE----EEEECCCCCC
Q ss_conf             -----9993369958869999999999998798982327986234578899999999999869824----2301134576
Q gi|254781065|r  208 -----YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP----YYLHHPDLAA  278 (352)
Q Consensus       208 -----~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P----YYl~~~d~v~  278 (352)
                           .+..-..|.......   -...|.+.+-++    |++++.+.    +.++.+.|.+.|..+    .++..+- -+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~tl----Vi~~~~~~----~~~i~~~L~~~G~~~~tpv~vv~~~s-~~  414 (457)
T 1pjq_A          347 RDYAQSVRLVTGHLKTGGEL---DWENLAAEKQTL----VFYMGLNQ----AATIQEKLIAFGMQADMPVALVENGT-SV  414 (457)
T ss_dssp             TTTCSEEEEECC------CC---CHHHHHSSSEEE----EESSCSSS----HHHHHHHHHHTTCCTTCEEEEEESTT-ST
T ss_pred             CCCEEEEEEECCCCCCCCCC---CHHHHHCCCCEE----EEECCHHH----HHHHHHHHHHCCCCCCCEEEEEEECC-CC
T ss_conf             56137999966988885412---899871899889----99897758----99999999956989998799998589-58


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             521011869999999999998288865410663
Q gi|254781065|r  279 GTSHFRLTIEEGQKIVASLKEKISGLCQPFYIL  311 (352)
Q Consensus       279 G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~  311 (352)
                      +..-++..+++--+       ...++..|..++
T Consensus       415 ~E~i~~~tL~~l~~-------~~~~~~~~slIi  440 (457)
T 1pjq_A          415 KQRVVHGVLTQLGE-------LAQQVESPALII  440 (457)
T ss_dssp             TCEEEEEEGGGHHH-------HTTSCCSSEEEE
T ss_pred             CCEEEEEEHHHHHH-------HHHCCCCCEEEE
T ss_conf             85899989999899-------872799988999


No 55 
>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, zinc, alternative splicing, cytoplasm; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=41.17  E-value=15  Score=16.34  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=11.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCE
Q ss_conf             99999998619981289874343
Q gi|254781065|r  162 LQKVLKTLRYIKHVQILRFHSRV  184 (352)
Q Consensus       162 L~~ll~~L~~i~hv~~IRi~TR~  184 (352)
                      -.++.+-|++-+||...=+.+|.
T Consensus       115 A~~va~FL~~~~~v~L~If~sRL  137 (207)
T 3ir2_A          115 AQEMAKFISKNKHVSLCIKTARI  137 (207)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEEEHHHH
T ss_conf             99999999768991798777652


No 56 
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structural genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=40.83  E-value=18  Score=15.88  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=33.4

Q ss_pred             HCCHHHHHHHHHCCCCEEEEEC-CCCHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf             3399999998625993899933-69958869999999999998798982
Q gi|254781065|r  191 RINPELIQCLKEAGKPVYIAIH-ANHPYEFSEEAIAAISRLANAGIILL  238 (352)
Q Consensus       191 Rit~~L~~~l~~~~~~~~iv~H-~NHp~Elt~~~~~A~~~L~~~Gv~v~  238 (352)
                      .+...+.+.+.+..+.++|.+- |+    .++...+|+.++.+.|+.|.
T Consensus       258 ~~~~~l~~~i~~A~~~I~I~tpYf~----p~~~~~~aL~~a~~rgv~V~  302 (458)
T 3hsi_A          258 ELNQVIEDLFLQVQKKLVICTPYFN----FPRTLQHKIATLLENGKRVE  302 (458)
T ss_dssp             HHHHHHHHHHHTCSSEEEEECSSSC----CCHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEEC----CCHHHHHHHHHHHHCCCCEE
T ss_conf             8999999999845545999985406----99899999999986799889


No 57 
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=40.83  E-value=18  Score=15.88  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             9999999997299747999726981324------989999999998619981289874
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVLKTLRYIKHVQILRFH  181 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll~~L~~i~hv~~IRi~  181 (352)
                      .+++..++++++|+|.++-..-|+--.+      +.+.+..++++|.+++.|..+.-.
T Consensus        79 ~~~~~~~~l~~~p~V~~~~~~tG~~dl~~~v~~~~~~~l~~~~~~l~~~~gv~~~~t~  136 (151)
T 2cyy_A           79 KYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM  136 (151)
T ss_dssp             CHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             0589999997699930999820688789999989999999999998459997599999


No 58 
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=40.50  E-value=14  Score=16.59  Aligned_cols=73  Identities=18%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             CHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEE
Q ss_conf             0000112233012555567898999999999972997479997269813249899999999986199812898743435
Q gi|254781065|r  107 VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP  185 (352)
Q Consensus       107 ~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~p  185 (352)
                      .+|+=|||-.+-+.......+.+++.+.+.-+..+..+==.++.--||..--+..|.+++      ..-..|=+.+|.=
T Consensus        35 ~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~~~~~~~~Vv~VvD~~d~~~S~~~~l~~~~------~~k~~ilVlNK~D  107 (368)
T 3h2y_A           35 VICQRCFRLKHYNEIQDVSLTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV------GNNKVLLVGNKAD  107 (368)
T ss_dssp             ---------------------CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS------SSSCEEEEEECGG
T ss_pred             EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHH------CCCCEEEEEECCC
T ss_conf             786224156536846567699899999999863248779999847888646387599986------7998899997823


No 59 
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A
Probab=40.40  E-value=8.6  Score=18.09  Aligned_cols=44  Identities=14%  Similarity=0.191  Sum_probs=26.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             99999986259938999336995886999999999999879898
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL  237 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v  237 (352)
                      ++.++.+++.+.+-.+-|||+|-++...+..+..+.+...|+.+
T Consensus       253 ~eal~~~~~~~~k~lvLtH~sh~~p~~~~~~~~~~~~~~~gv~v  296 (321)
T 3jxp_A          253 GGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV  296 (321)
T ss_dssp             TCHHHHHTTCSSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             99999998589984999967999846574979999776379498


No 60 
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.00  E-value=18  Score=15.80  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHH-HHHCCCCCEEEEEE
Q ss_conf             999999999729974799972698-1324-----9899999999-98619981289874
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLK-TLRYIKHVQILRFH  181 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~-~L~~i~hv~~IRi~  181 (352)
                      ..++..+++++.|+|.++-...|| -+++     +.+.|..++. .|.++|.|..+.-+
T Consensus        76 ~~~~v~~~l~~~p~V~~v~~vtG~~Dl~~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t~  134 (141)
T 1i1g_A           76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPA  134 (141)
T ss_dssp             GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             49999999727981999999956788999999899999999999997359997189999


No 61 
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=39.96  E-value=12  Score=17.04  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             886999999999999879898232798623457889999999999
Q gi|254781065|r  217 YEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF  261 (352)
Q Consensus       217 ~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L  261 (352)
                      +++-|++.++++.|+++|+.+    .+|.|  |+..+-..+.++|
T Consensus       162 D~~R~~a~~~i~~L~~~Gi~v----~mlTG--D~~~~a~~ia~~l  200 (287)
T 3a1c_A          162 DTLKESAKPAVQELKRMGIKV----GMITG--DNWRSAEAISREL  200 (287)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEE----EEECS--SCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCE----EEECC--CCHHHHHHHHHHC
T ss_conf             888613999999999859958----99869--9679999999982


No 62 
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=39.90  E-value=18  Score=15.79  Aligned_cols=27  Identities=11%  Similarity=0.263  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -.++.++++.++++++|+=|||||...
T Consensus        38 ~~~l~~al~~~~~d~~v~vvvl~g~g~   64 (276)
T 2j5i_A           38 NREMIDVLETLEQDPAAGVLVLTGAGE   64 (276)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999997399917999978988


No 63 
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8}
Probab=39.56  E-value=16  Score=16.12  Aligned_cols=51  Identities=20%  Similarity=0.138  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHH-HHHHCCCCCEEEE
Q ss_conf             9999999999729974799972698132------4989999999-9986199812898
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVL-KTLRYIKHVQILR  179 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll-~~L~~i~hv~~IR  179 (352)
                      ...++..+.+++.|+|.++-..-|+.=.      -+.+.|..++ +.+.++|.|..++
T Consensus        13 ~~~~~v~~~l~~~peV~~~~~vtG~~Dli~~v~~~d~~~l~~~l~~~i~~~~gV~~t~   70 (92)
T 2djw_A           13 NRVQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTE   70 (92)
T ss_dssp             GGHHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEE
T ss_pred             CCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8799999999749888564262388889999998999999999999851599994699


No 64 
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=39.54  E-value=16  Score=16.17  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=17.2

Q ss_pred             CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             2798623457889999999999986982423
Q gi|254781065|r  240 QSVLLKGINDDPEILANLMRTFVELRIKPYY  270 (352)
Q Consensus       240 QsVLLkgVND~~~~l~~L~~~L~~~gV~PYY  270 (352)
                      +-|+-=||--|...-..|.+.+...|+.-|+
T Consensus       247 ~lvv~GGVAAN~~LR~~L~~~~~~~g~~~~~  277 (330)
T 2ivn_A          247 EVVLVGGVAANNRLREMLRIMTEDRGIKFFV  277 (330)
T ss_dssp             EEEEESGGGGCHHHHHHHHHHHHHHTCEEEC
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             5232215776699999999999975998985


No 65 
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=38.82  E-value=19  Score=15.67  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      -.++.++++.+.++++|+=|||||..
T Consensus        32 ~~el~~~l~~~~~d~~v~vvvltg~g   57 (269)
T 1nzy_A           32 MQEVTDALNRAEEDDSVGAVMITGAE   57 (269)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             99999999999858891699997999


No 66 
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=38.58  E-value=19  Score=15.65  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      ..++.++++.+.++++++=|||||+.+
T Consensus        38 ~~~L~~~l~~~~~d~~v~~vvl~g~g~   64 (265)
T 3kqf_A           38 LEELQNILTQINEEANTRVVILTGAGE   64 (265)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEEESSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999986489956999965899


No 67 
>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus}
Probab=38.52  E-value=17  Score=15.93  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             999999999972997479997269
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      .+..++++++++. .|+=++|||-
T Consensus       139 ~~a~~~I~~L~~~-gi~v~mlTGD  161 (263)
T 2iye_A          139 PNLKDYLEKLKNE-GLKIIILSGD  161 (263)
T ss_dssp             SCCHHHHHHHHGG-GCEEEEECSS
T ss_pred             CHHHHHHHHHHHC-CCEEEEECCC
T ss_conf             3099999999986-9969994587


No 68 
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=37.96  E-value=19  Score=15.64  Aligned_cols=16  Identities=19%  Similarity=0.013  Sum_probs=8.7

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             9998999999999853
Q gi|254781065|r   19 LIKKEQIDEIKEISNH   34 (352)
Q Consensus        19 ~Ls~e~~~~~~~~~~~   34 (352)
                      .++++.++.+.++.+.
T Consensus        21 ~i~~~~~~ai~~l~~~   36 (246)
T 3f9r_A           21 CQTDEMRALIKRARGA   36 (246)
T ss_dssp             CCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             8899999999999968


No 69 
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=37.53  E-value=20  Score=15.54  Aligned_cols=51  Identities=6%  Similarity=-0.046  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHH-HHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             88999999999-9986982423011345765210118699999999999982
Q gi|254781065|r  250 DPEILANLMRT-FVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK  300 (352)
Q Consensus       250 ~~~~l~~L~~~-L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~  300 (352)
                      +.+......+. +-.+|+.+.-+..-|-..-..+=+++-+.-.++.+.+.+.
T Consensus       306 ~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGLSr~N~it~~~l~~lL~~~~~~  357 (453)
T 3a3d_A          306 SFQLGTLAVKSILQKQGIRFGNSILADGSGLSRHNLVAPKTMLSVLEYIAKN  357 (453)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             0778898888899972999765255277777734431899999999998759


No 70 
>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.14.1.3 PDB: 1q51_A 1rjm_A* 1rjn_A*
Probab=36.99  E-value=20  Score=15.48  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      .+++.++++-++++++|+=|||||.
T Consensus        66 ~~eL~~al~~~~~d~~vrvvVltG~   90 (314)
T 1q52_A           66 VDELYRVLDHARMSPDVGVVLLTGN   90 (314)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999999999974999758999578


No 71 
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=36.29  E-value=21  Score=15.41  Aligned_cols=25  Identities=8%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      ..++..+++.+.++++|+=|||||.
T Consensus        64 ~~el~~~l~~~~~d~~vrviVltG~   88 (333)
T 3njd_A           64 PLELSALVERADLDPDVHVILVSGR   88 (333)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999999972999459999789


No 72 
>3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium}
Probab=35.34  E-value=21  Score=15.30  Aligned_cols=52  Identities=27%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             7145207537999727430000011223301255556789---899999999997299747999726981
Q gi|254781065|r   88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLS---SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus        88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~---~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      -++....|.|..++-++=               +..+.++   -+++.++++.++++++|+=|||||..+
T Consensus        26 ~v~~~~~d~Va~ItlnrP---------------~~~Nal~~~~~~el~~al~~~~~d~~vr~vvltg~g~   80 (270)
T 3p85_A           26 ILLSNTEERVRTLTLNRP---------------QARNALSAALRDRFFGALADAETDDDVDVVIITGADP   80 (270)
T ss_dssp             CEEEEEETTEEEEEECCG---------------GGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTT
T ss_pred             EEEEEEECCEEEEEECCC---------------CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             599997899999996588---------------8779989999999999999997598916999979986


No 73 
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylation, structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=35.30  E-value=21  Score=15.30  Aligned_cols=107  Identities=25%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHH--------CCHHHH
Q ss_conf             898999999999972997479997269813249899999999986199812898743435634343--------399999
Q gi|254781065|r  126 LSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQR--------INPELI  197 (352)
Q Consensus       126 ~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~R--------it~~L~  197 (352)
                      .+.+.+.+-++.+.++-.++ +|.+|-   +-+.+..+.+.+.|++.+...        .++.|--        ..++.+
T Consensus        53 ~~~~~~~~ql~~l~~d~~~~-aIkiG~---l~s~~~~~~v~~~l~~~~~~~--------~v~dpv~~~~~~~~~~~~~~~  120 (258)
T 1ub0_A           53 LPPEVVYAQIESVAQDFPLH-AAKTGA---LGDAAIVEAVAEAVRRFGVRP--------LVVDPVMVAKSGDPLLAKEAA  120 (258)
T ss_dssp             CCHHHHHHHHHHHHHHSCCS-EEEECC---CCSHHHHHHHHHHHHHTTCCS--------EEECCCC---------CHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCC-EEEECC---CCCCHHHHHHHHHHHHCCCCC--------EEECCCCCCCCCCCCCCHHHH
T ss_conf             89899999999851388852-478845---565139999999999659977--------666563356789857898999


Q ss_pred             HHHHHCCCC-EEEEECCCCHH--H---C-------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHH
Q ss_conf             998625993-89993369958--8---6-------999999999999879898232798623457889
Q gi|254781065|r  198 QCLKEAGKP-VYIAIHANHPY--E---F-------SEEAIAAISRLANAGIILLSQSVLLKGINDDPE  252 (352)
Q Consensus       198 ~~l~~~~~~-~~iv~H~NHp~--E---l-------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~  252 (352)
                      ..+.+.=.| ..+.|    ||  |   |       .+++.+|.+.|.+.|.    +.|+++|.+.+.+
T Consensus       121 ~~~~~~L~p~adiiT----PN~~Ea~~L~g~~~~~~~~~~~aa~~l~~~g~----~~Vlitg~~~~~~  180 (258)
T 1ub0_A          121 AALKERLFPLADLVT----PNRLEAEALLGRPIRTLKEAEEAAKALLALGP----KAVLLKGGHLEGE  180 (258)
T ss_dssp             HHHHHHTGGGCSEEC----CBHHHHHHHHCSCCCSHHHHHHHHHHHHTTSC----SCEEEEEEECC--
T ss_pred             HHHHHHHCCCCEEEC----CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CEEEECCCCCCCC
T ss_conf             999987256745734----99999999858898998999999999997289----6599626643322


No 74 
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=35.01  E-value=20  Score=15.46  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC--CCCCC-------C-------------HHHHHHHHHHHHCCCCCE---------
Q ss_conf             8999999999972997479997269--81324-------9-------------899999999986199812---------
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG--DPLIL-------S-------------HKRLQKVLKTLRYIKHVQ---------  176 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG--DPl~l-------~-------------~~~L~~ll~~L~~i~hv~---------  176 (352)
                      ..++.++++.++++++|+=|||+|.  +-+.-       .             ...+..++..|...|-.-         
T Consensus        36 ~~eL~~al~~~~~d~~v~vvVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~  115 (289)
T 3h0u_A           36 VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRAR  115 (289)
T ss_dssp             HHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             99999999998539895699992789980114015454443201013433456789999999999689989980599524


Q ss_pred             ----------EEEEECC--EEEEEHHH-C--C------HHHHHHHH--------HCCCCEE--------EEECCCCHHHC
Q ss_conf             ----------8987434--35634343-3--9------99999986--------2599389--------99336995886
Q gi|254781065|r  177 ----------ILRFHSR--VPIVDPQR-I--N------PELIQCLK--------EAGKPVY--------IAIHANHPYEF  219 (352)
Q Consensus       177 ----------~IRi~TR--~pv~~P~R-i--t------~~L~~~l~--------~~~~~~~--------iv~H~NHp~El  219 (352)
                                .+||.|+  .-...|+. +  .      .-|.+++.        -.++++-        ++..+--+.|+
T Consensus       116 GgG~~lal~cD~~iaa~e~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l  195 (289)
T 3h0u_A          116 GAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAEL  195 (289)
T ss_dssp             THHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHH
T ss_pred             CCHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHH
T ss_conf             63037877177135635886153664465258886425777765109999999983994769999987997187188799


Q ss_pred             CHHHHHHHHHHHHCC
Q ss_conf             999999999999879
Q gi|254781065|r  220 SEEAIAAISRLANAG  234 (352)
Q Consensus       220 t~~~~~A~~~L~~~G  234 (352)
                      ..++.+-.++|.+..
T Consensus       196 ~~~a~~~a~~la~~~  210 (289)
T 3h0u_A          196 DEFVAGIAARMSGFP  210 (289)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999999998679


No 75 
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis}
Probab=34.64  E-value=22  Score=15.23  Aligned_cols=12  Identities=17%  Similarity=0.457  Sum_probs=5.0

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             998999999999
Q gi|254781065|r   20 IKKEQIDEIKEI   31 (352)
Q Consensus        20 Ls~e~~~~~~~~   31 (352)
                      ++++..+.+...
T Consensus        23 i~~~~~~al~~l   34 (279)
T 3mpo_A           23 LAQATIDAVQAA   34 (279)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
T ss_conf             099999999999


No 76 
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=34.31  E-value=22  Score=15.19  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHH-CCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999998625993899933699588699999999999987989823279862-3457889999999999986982423
Q gi|254781065|r  193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLK-GINDDPEILANLMRTFVELRIKPYY  270 (352)
Q Consensus       193 t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLk-gVND~~~~l~~L~~~L~~~gV~PYY  270 (352)
                      +.++++.+.+.+-. -+|.......-+.+...++++++.+.|++|..-|=-+. +||.+...   --+.|.++||.|-+
T Consensus       317 ~~~~l~~~~~~g~~-GiVl~g~G~G~vp~~~~~~l~~a~~~gi~VV~tSqc~~G~V~~~~Y~---~G~~L~~~GvI~~g  391 (438)
T 1zq1_A          317 SSEIIDFLVDKGYK-GIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYS---TGRKLLKAGVIPCE  391 (438)
T ss_dssp             CTHHHHHHHHTTCS-EEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSH---HHHHHHHTTCEECT
T ss_pred             CHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC---CHHHHHHCCEEECC
T ss_conf             88999999867997-99991627988998999999999978957999577897882776553---45779869989899


No 77 
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=33.92  E-value=22  Score=15.15  Aligned_cols=26  Identities=19%  Similarity=0.228  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      ..++..+++.+..+++|+=|||||+.
T Consensus       196 ~~eL~~al~~~~~D~~VrvVVLtGa~  221 (440)
T 2np9_A          196 VDDMETAVDLALLDPGVRVGLLRGGV  221 (440)
T ss_dssp             HHHHHHHHHHHHHCTTCSEEEEEECB
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             99999999999629996499996888


No 78 
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=33.49  E-value=23  Score=15.10  Aligned_cols=47  Identities=28%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCCCC---H--------HHHHHHHHHHHCCCC
Q ss_conf             899999999997299747999726--------9813249---8--------999999999861998
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLILS---H--------KRLQKVLKTLRYIKH  174 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~l~---~--------~~L~~ll~~L~~i~h  174 (352)
                      -.++..+++.++++++|+=|||+|        +|--.+.   +        .....++..+...+-
T Consensus        53 ~~eL~~al~~~~~d~~i~vvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  118 (263)
T 2j5g_A           53 HREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEV  118 (263)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999997599985999978899752887231334445531014667899999999996699


No 79 
>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp}
Probab=33.34  E-value=23  Score=15.09  Aligned_cols=93  Identities=22%  Similarity=0.263  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC
Q ss_conf             899999999997299747999726-9813249899999999986199812898743435634343399999998625993
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG-GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP  206 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG-GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~  206 (352)
                      ++++.++.+.+.++ +++.|+++| |+..... .....+++++..++ +         -++.|..+...-..   .....
T Consensus        35 ~e~~~~~a~~l~~r-~~~~I~~~G~GsS~~aa-~~a~~~~e~~~~i~-v---------~~~~~~~~~~~~~~---~~~~t   99 (366)
T 3knz_A           35 REDLWRAAQALTER-GVTRIILTGSGTSYHGA-LTARTFMQRWCALP-V---------DVCWPFMLDDETLA---RSGKA   99 (366)
T ss_dssp             CHHHHHHHHHHHHT-TCCEEEEECCHHHHHHH-HHHHHHHHHHHTSC-E---------EEECGGGCCHHHHH---HSCSE
T ss_pred             HHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHH-HHHHHHHHHHHCCC-E---------EEECHHHHCCCCCC---CCCCE
T ss_conf             99999999999867-99989999841799999-99999999985996-7---------99556774077778---99981


Q ss_pred             EEEEECCCCHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf             89993369958869999999999998798982
Q gi|254781065|r  207 VYIAIHANHPYEFSEEAIAAISRLANAGIILL  238 (352)
Q Consensus       207 ~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~  238 (352)
                      ++|.+  -+-. =|+++.+|+++.++.|+.+.
T Consensus       100 lvI~i--SqSG-~T~eti~Al~~ak~~ga~~i  128 (366)
T 3knz_A          100 LVVGI--SQGG-GSLSTLAAMERARNVGHITA  128 (366)
T ss_dssp             EEEEE--ESSS-CCHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEE--ECCC-CCHHHHHHHHHHHHCCCEEE
T ss_conf             89999--2894-98899999999997298378


No 80 
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=32.74  E-value=14  Score=16.62  Aligned_cols=88  Identities=11%  Similarity=0.137  Sum_probs=41.7

Q ss_pred             CHHHHHHHH-HHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE--EEEECCEEEEEHHHC-CHHHHHHHH
Q ss_conf             989999999-99972-9974799972698132498999999999861998128--987434356343433-999999986
Q gi|254781065|r  127 SSKDTEAAL-AYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI--LRFHSRVPIVDPQRI-NPELIQCLK  201 (352)
Q Consensus       127 ~~~~~~~~~-~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~--IRi~TR~pv~~P~Ri-t~~L~~~l~  201 (352)
                      +.+++...+ .++.. -++|..|++|.=-|-  -+..+..++.+...++-+..  .+.+-+.-...|+++ .|.++.++.
T Consensus        38 ~~de~~~~l~~~~~~~~~~i~~v~isSVvp~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~a  115 (249)
T 3bex_A           38 TEDELFSHLHPLLGDAMREIKGIGVASVVPT--QNTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVA  115 (249)
T ss_dssp             CHHHHHHHHHHHHGGGGGGEEEEEEEESCHH--HHHHHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEEEEECCC--HHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCHHHHHHHHHHHHHH
T ss_conf             8799999999985344543220244354260--68999999985358633884366777615058877747999999999


Q ss_pred             ---HCCCCEEEEECCCCHH
Q ss_conf             ---2599389993369958
Q gi|254781065|r  202 ---EAGKPVYIAIHANHPY  217 (352)
Q Consensus       202 ---~~~~~~~iv~H~NHp~  217 (352)
                         .+++++ +|+.+-++-
T Consensus       116 A~~~~~~~~-iVVD~GTA~  133 (249)
T 3bex_A          116 FVKEYGKNG-IIIDMGTAT  133 (249)
T ss_dssp             HHHHTCSCE-EEEEESSEE
T ss_pred             HHHHCCCCE-EEEECCCCE
T ss_conf             997559818-999748731


No 81 
>3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str}
Probab=32.65  E-value=23  Score=15.01  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      -.++.++++.++++++|+=|||||.
T Consensus        52 ~~eL~~al~~~~~d~~v~~vVltg~   76 (282)
T 3ome_A           52 LDELDAAWTRAAEDNEVKVIILRAN   76 (282)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             9999999999986889179998268


No 82 
>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=32.26  E-value=17  Score=16.07  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             89999999999729974799972698
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      -.++..+++.++++ +++=|||||..
T Consensus        53 ~~eL~~al~~~~~d-~~~~vVltg~g   77 (291)
T 2fbm_A           53 IKEIVNALNSAAAD-DSKLVLFSAAG   77 (291)
T ss_dssp             HHHHHHHHHHHHHS-SCSEEEEEECS
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf             99999999998739-98799997889


No 83 
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=32.19  E-value=24  Score=14.96  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             899999999997299747999726981
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDP  154 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP  154 (352)
                      ..++.++++.+.++++|+=|||+||.+
T Consensus        29 ~~~l~~~l~~~~~d~~v~~vVl~g~g~   55 (250)
T 2a7k_A           29 ETSVKDALARANADDSVRAVVVYGGAE   55 (250)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999996399964999982899


No 84 
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=32.10  E-value=24  Score=14.95  Aligned_cols=80  Identities=18%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHH
Q ss_conf             8714520753799972743000001122330125555678989999999999729974799972698-1324-----989
Q gi|254781065|r   87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHK  160 (352)
Q Consensus        87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~  160 (352)
                      .|++.+|  ++.+-+.......|.|++=+. .  +.      .+.++..+.+++.|+|.++-...|+ -+++     +.+
T Consensus        48 ~GiI~~~--~~~id~~~lg~~~~a~i~i~~-~--~~------~~~~~~~~~l~~~p~V~~~~~vtG~~D~i~~v~~~~~~  116 (150)
T 2w25_A           48 RGVVQGY--SARINPEAVGHLLSAFVAITP-L--DP------SQPDDAPARLEHIEEVESCYSVAGEASYVLLVRVASAR  116 (150)
T ss_dssp             TTSEEEE--EEEECTGGGTCCEEEEEEEEE-S--CT------TSCCCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHH
T ss_pred             CCCCCCC--CCCCCCHHCCCEEEEEEEEEE-C--CC------CCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCHH
T ss_conf             8983100--101680114970899999997-1--56------20799999986168472899936998899999989999


Q ss_pred             HHHHHHHHHHCCCCCEE
Q ss_conf             99999999861998128
Q gi|254781065|r  161 RLQKVLKTLRYIKHVQI  177 (352)
Q Consensus       161 ~L~~ll~~L~~i~hv~~  177 (352)
                      .|..++++|.+++.|++
T Consensus       117 ~l~~~~~~i~~~~gV~~  133 (150)
T 2w25_A          117 ALEDLLQRIRTTANVRT  133 (150)
T ss_dssp             HHHHHHHHHHHHHTEEE
T ss_pred             HHHHHHHHHCCCCCEEE
T ss_conf             99999998606898779


No 85 
>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str}
Probab=32.02  E-value=24  Score=14.94  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEE
Q ss_conf             9999999997299747999726981324------989999999-9986199812898
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILR  179 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IR  179 (352)
                      ..++..+-|+++|+|.++-...|+.=.+      +.+.|..++ +.|.++|.|...+
T Consensus        14 ~~~~v~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~v~~~l~~~~gV~~t~   70 (83)
T 2zbc_A           14 GEDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTL   70 (83)
T ss_dssp             CHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999769473488981189989999999999999999999860698992799


No 86 
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=31.42  E-value=15  Score=16.29  Aligned_cols=11  Identities=0%  Similarity=-0.269  Sum_probs=3.7

Q ss_pred             CCHHHHHHHHH
Q ss_conf             99899999999
Q gi|254781065|r   20 IKKEQIDEIKE   30 (352)
Q Consensus        20 Ls~e~~~~~~~   30 (352)
                      ++++..+.++.
T Consensus        27 i~~~~~~ai~~   37 (275)
T 1xvi_A           27 DWQPAAPWLTR   37 (275)
T ss_dssp             SCCTTHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             79999999999


No 87 
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=31.12  E-value=25  Score=14.84  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      ..++..+++.++++++|+=|||||.
T Consensus        45 ~~el~~~l~~~~~d~~v~~vvltg~   69 (257)
T 1szo_A           45 HDELAYCFHDIACDRENKVVILTGT   69 (257)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECB
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999999999974999549999668


No 88 
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=30.50  E-value=25  Score=14.77  Aligned_cols=18  Identities=11%  Similarity=0.379  Sum_probs=10.5

Q ss_pred             HHHHHHHHCCCEEEEEEE
Q ss_conf             999999729974799972
Q gi|254781065|r  133 AALAYIQEKSQIWEVIFT  150 (352)
Q Consensus       133 ~~~~Yi~~~~eI~eVilS  150 (352)
                      +..+|+++||.|..|.--
T Consensus       209 ~lA~~L~~hp~V~~V~yP  226 (331)
T 1pff_A          209 KVAEFLHEHKAVKKVYYP  226 (331)
T ss_dssp             HHHHHHHHCTTCCCEECT
T ss_pred             HHHHHHHHCCCEEECCCC
T ss_conf             999978758984341168


No 89 
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=30.37  E-value=25  Score=14.75  Aligned_cols=18  Identities=39%  Similarity=0.289  Sum_probs=7.1

Q ss_pred             HHHHHHHCCCEEEEEEECC
Q ss_conf             9999972997479997269
Q gi|254781065|r  134 ALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       134 ~~~Yi~~~~eI~eVilSGG  152 (352)
                      ++..++++ .+.=|+.||-
T Consensus        29 ~i~~l~~~-Gi~~~i~TGR   46 (288)
T 1nrw_A           29 ALRQAQRD-GIEVVVSTGR   46 (288)
T ss_dssp             HHHHHHHT-TCEEEEECSS
T ss_pred             HHHHHHHC-CCEEEEECCC
T ss_conf             99999978-9999999799


No 90 
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=30.35  E-value=25  Score=14.75  Aligned_cols=15  Identities=27%  Similarity=0.240  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHCCCEE
Q ss_conf             999999999879898
Q gi|254781065|r  223 AIAAISRLANAGIIL  237 (352)
Q Consensus       223 ~~~A~~~L~~~Gv~v  237 (352)
                      +...+++|++.|+++
T Consensus       118 ~~~i~~~l~~~gi~~  132 (220)
T 1a2z_A          118 VRAITKTLRDNGIPA  132 (220)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCCE
T ss_conf             999999998659983


No 91 
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=30.13  E-value=26  Score=14.73  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             6999999999999879898232798
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVL  243 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVL  243 (352)
                      +|++=.++++.|.+.|+.+..|.|=
T Consensus       122 l~~ee~~~l~~l~~~Gv~v~~q~vP  146 (164)
T 1nrz_A          122 LDPQDIQAFRELDKLGVKLDLRVVA  146 (164)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             2899999999999779879999894


No 92 
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=30.04  E-value=26  Score=14.72  Aligned_cols=50  Identities=12%  Similarity=0.083  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89999999999986982423011345765210118699999999999982
Q gi|254781065|r  251 PEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK  300 (352)
Q Consensus       251 ~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~  300 (352)
                      ......+.+.|...|+-+--+..-|-..=..+=+++-+.-.++++.++..
T Consensus       322 ~~g~~~v~~~l~~~gi~~~~~~l~DGSGLSr~Nrisp~~l~~lL~~~~~~  371 (462)
T 1w5d_A          322 EKGLEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQ  371 (462)
T ss_dssp             HHHHHHHHHHGGGGTCCGGGCBCSCSSSCCTTCBBCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             88999999999972788665277558878755652999999999998859


No 93 
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A
Probab=29.75  E-value=26  Score=14.68  Aligned_cols=50  Identities=12%  Similarity=0.252  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEE
Q ss_conf             9999999997299747999726981324------989999999-9986199812898
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILR  179 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IR  179 (352)
                      .+++..+-+++.|+|.++-...|+.=.+      +.+.|..++ ++|.++|.|...+
T Consensus        14 ~~~~v~~~l~~~peV~~v~~vtG~~Dli~~v~~~d~~~l~~~v~~~l~~~~gV~~t~   70 (83)
T 2cvi_A           14 KEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTS   70 (83)
T ss_dssp             CHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEE
T ss_pred             CHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999779997999992389889999998999999999999863599983799


No 94 
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=29.67  E-value=26  Score=14.67  Aligned_cols=16  Identities=13%  Similarity=0.212  Sum_probs=10.3

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             9998999999999853
Q gi|254781065|r   19 LIKKEQIDEIKEISNH   34 (352)
Q Consensus        19 ~Ls~e~~~~~~~~~~~   34 (352)
                      .++++.++.+.++.+.
T Consensus        22 ~i~~~~~~al~~l~~~   37 (279)
T 3niw_A           22 EISSRNRETLIRIQEQ   37 (279)
T ss_dssp             CCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             3399999999999978


No 95 
>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=29.52  E-value=26  Score=14.66  Aligned_cols=38  Identities=5%  Similarity=-0.065  Sum_probs=23.9

Q ss_pred             HHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             98698242301134576521011869999999999998
Q gi|254781065|r  262 VELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKE  299 (352)
Q Consensus       262 ~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~  299 (352)
                      ...|+.+--+...|-..-...=+++-+.-.++...+..
T Consensus       323 ~~~g~~~~~~~~~dgSGLSr~n~~t~~~~~~~L~~~~~  360 (458)
T 2ex2_A          323 QQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQ  360 (458)
T ss_dssp             HTSCCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             86088865524304788765565599999999999884


No 96 
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=29.33  E-value=26  Score=14.63  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             89999999999729974799972698132
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI  156 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~  156 (352)
                      .+++.++++.+.++++|+=|||+|..+..
T Consensus        39 ~~~l~~~l~~~~~d~~v~~vvl~g~g~~f   67 (263)
T 3moy_A           39 EAEVLDAARDFDADLEIGAIVVTGSERAF   67 (263)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEECCSSEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             99999999987328981699986785454


No 97 
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis}
Probab=29.32  E-value=26  Score=14.63  Aligned_cols=10  Identities=20%  Similarity=0.497  Sum_probs=4.1

Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999861
Q gi|254781065|r  162 LQKVLKTLRY  171 (352)
Q Consensus       162 L~~ll~~L~~  171 (352)
                      ++.+++++.+
T Consensus       118 ~~~i~~~l~~  127 (215)
T 3lac_A          118 MKAIVKKLQE  127 (215)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999885


No 98 
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=29.28  E-value=26  Score=14.63  Aligned_cols=39  Identities=21%  Similarity=0.527  Sum_probs=34.0

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999729974799972698132498999999999861
Q gi|254781065|r  133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       133 ~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      .....|++.+.|...+-+||.|.-+++.-...++....+
T Consensus       148 ~~~~~Ir~t~GV~~fVg~g~~P~pl~~~EI~~il~~~~~  186 (248)
T 1m1h_A          148 KLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKR  186 (248)
T ss_dssp             HHHHHHHTSTTEEEECEETTEECEECHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCEEEEEECCCEEEECCHHHHHHHHHHHHC
T ss_conf             168887367424775206981014599999999987654


No 99 
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=29.27  E-value=26  Score=14.63  Aligned_cols=102  Identities=9%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             EEEECCCCCCCCH---------HHHHHHHHHHHC-----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC
Q ss_conf             9972698132498---------999999999861-----99812898743435634343399999998625993899933
Q gi|254781065|r  147 VIFTGGDPLILSH---------KRLQKVLKTLRY-----IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH  212 (352)
Q Consensus       147 VilSGGDPl~l~~---------~~L~~ll~~L~~-----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H  212 (352)
                      +|++.|+|+....         ..+...+..|..     -..++.+.++...-.    +.-+++...++++-.+      
T Consensus        23 lLF~s~epvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~l~~~~ggy~l----~t~~~~~~~v~~~~~~------   92 (219)
T 2z99_A           23 LLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRM----YTRARFAPYVEKLLLD------   92 (219)
T ss_dssp             HHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEE----EECGGGHHHHHHHHHH------
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEE----EECHHHHHHHHHHHCC------
T ss_conf             999717997999999883898899999999999987426663589996895899----9575661689998246------


Q ss_pred             CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             699588699999999999987989823279862345788999999999
Q gi|254781065|r  213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                       .-+..|+..+.+.+.-+.-.+-.-..+-.-+||||-+ .++..|..+
T Consensus        93 -~~~~~LS~aalETLAIIAY~QPiTr~eIe~IRGV~s~-~~l~~L~er  138 (219)
T 2z99_A           93 -GARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVD-AVMRTLLAR  138 (219)
T ss_dssp             -HHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCCH-HHHHHHHHT
T ss_pred             -CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH-HHHHHHHHC
T ss_conf             -7667678999999999997398479999987397767-899999987


No 100
>1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2
Probab=29.26  E-value=12  Score=17.04  Aligned_cols=83  Identities=20%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             71452075379997274300000112233012555567898999999999972997479997269813249899999999
Q gi|254781065|r   88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK  167 (352)
Q Consensus        88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~  167 (352)
                      .|--|+..-+-+  .-..+..|.||.+.|.... .....+++++.+++. +.        ++-||-|-+....+-.+.++
T Consensus        62 ~Ld~KtKeLI~l--a~s~a~~c~~ci~~H~~~A-~~~G~t~eEI~Eal~-va--------~~~gG~~~~~~~~~A~e~~e  129 (145)
T 1p8c_A           62 KLDVKTKELMGL--VASTVLRCDDCIRYHLVRC-VQEGASDEEIFEALD-IA--------LVVGGSIVIPHLRRAVGFLE  129 (145)
T ss_dssp             SSCHHHHHHHHH--HHHHHTTCHHHHHHHHHHH-HTTSCCHHHHHHHHH-HH--------HHHHCGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH--HHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHH-HH--------HHHCCCHHHHHHHHHHHHHH
T ss_conf             999999999999--9999939999999999999-883999999999999-99--------99855257989999999999


Q ss_pred             HHHCCC-CCEEEEEEC
Q ss_conf             986199-812898743
Q gi|254781065|r  168 TLRYIK-HVQILRFHS  182 (352)
Q Consensus       168 ~L~~i~-hv~~IRi~T  182 (352)
                      .|.+.. .-+++-|||
T Consensus       130 el~e~~k~Ge~v~~g~  145 (145)
T 1p8c_A          130 ELREMEKNGETISLGS  145 (145)
T ss_dssp             HHHTTSTTCCCCC---
T ss_pred             HHHHHHCCCCCCCCCC
T ss_conf             9999872688424779


No 101
>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.49.1.2
Probab=29.21  E-value=27  Score=14.62  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CCEEEEECCCC-----HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC
Q ss_conf             93899933699-----588699999999999987989823279862345
Q gi|254781065|r  205 KPVYIAIHANH-----PYEFSEEAIAAISRLANAGIILLSQSVLLKGIN  248 (352)
Q Consensus       205 ~~~~iv~H~NH-----p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN  248 (352)
                      ..+++|||-+-     .+|+++|.   .+.|.+.|+.|+.+|=+|.|+-
T Consensus        74 ~~lVvVTh~~GF~~pg~~e~~~e~---~~~L~~~Gv~V~t~tH~lSG~e  119 (206)
T 1t57_A           74 GNIVSVTHHAGFREKGQLELEDEA---RDALLERGVNVYAGSHALSGVG  119 (206)
T ss_dssp             SEEEEECCCTTSSSTTCCSSCHHH---HHHHHHHTCEEECCSCTTTTHH
T ss_pred             CCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCH
T ss_conf             979999064688999834279999---9999977988999503034413


No 102
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.108.1.10
Probab=28.88  E-value=26  Score=14.70  Aligned_cols=16  Identities=13%  Similarity=0.430  Sum_probs=9.8

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             9998999999999853
Q gi|254781065|r   19 LIKKEQIDEIKEISNH   34 (352)
Q Consensus        19 ~Ls~e~~~~~~~~~~~   34 (352)
                      .++++..+.++++.+.
T Consensus        20 ~i~~~~~~al~~l~~~   35 (231)
T 1wr8_A           20 MIHEKALEAIRRAESL   35 (231)
T ss_dssp             CBCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             3299999999999977


No 103
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=28.64  E-value=27  Score=14.56  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             799972698132498999999999861
Q gi|254781065|r  145 WEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       145 ~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      +-|+|++|||+..+.  ...++.++.+
T Consensus        85 ~Vv~L~~GDP~i~~t--~~~l~~~~~~  109 (294)
T 1wde_A           85 VVAVVTAGDPMVATT--HSSLAAEALE  109 (294)
T ss_dssp             EEEEEESBCTTSSSS--HHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCC--HHHHHHHHHH
T ss_conf             879996799987671--8999999998


No 104
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=28.34  E-value=27  Score=14.52  Aligned_cols=39  Identities=13%  Similarity=0.124  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             9999999999729974799972698132498999999999861
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
                      ...+...+++++..  +=+++++|||+..+.  ..+++..+.+
T Consensus        84 ~~~~~i~~~~~~g~--~V~~l~~GDP~~~~~--~~~l~~~~~~  122 (259)
T 2e0n_A           84 ANYASMAEEVQAGR--RVAVVSVGDGGFYST--ASAIIERARR  122 (259)
T ss_dssp             GGHHHHHHHHHTTC--EEEEEESBCTTBSCT--HHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCC--CEEEEECCCCCCCCH--HHHHHHHHCC
T ss_conf             99999999986799--489990687544463--9999777426


No 105
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.38  E-value=28  Score=14.41  Aligned_cols=53  Identities=28%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHH-HHHHCCCCCEEEEEE
Q ss_conf             999999999972997479997-26981324-----989999999-998619981289874
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVL-KTLRYIKHVQILRFH  181 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll-~~L~~i~hv~~IRi~  181 (352)
                      ++.++.++.++++|+|.++-. ||..-+++     +.+.+..++ +.+.++|+|..++-.
T Consensus        80 ~~~~~~~~~l~~~~~V~~~~~vtG~~dl~~~v~~~~~~~l~~~~~~~i~~~~gV~~~~t~  139 (152)
T 2cg4_A           80 KDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETL  139 (152)
T ss_dssp             GGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCHHEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             239999999861834316776058976999999899999999999985269998589999


No 106
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CBIE); beta, alpha-beta-alpha sandwich, structural genomics, PSI; HET: SAH; 2.27A {Archaeoglobus fulgidus dsm 4304} SCOP: c.90.1.1
Probab=27.27  E-value=16  Score=16.18  Aligned_cols=29  Identities=10%  Similarity=0.221  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH
Q ss_conf             99999999997299747999726981324989
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHK  160 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~  160 (352)
                      +++.+.++-.+ ..  +=|+|++|||+..+..
T Consensus        77 ~~~~~~~~~~~-g~--~VvvL~sGDP~iyg~~  105 (221)
T 2bb3_A           77 DEIRRIMEEGR-ER--EVAVISTGDPMVAGLG  105 (221)
T ss_dssp             HHHHHHHHHHH-HS--CEEEEESBCTTTTTSH
T ss_pred             HHHHHHHHHCC-CC--CEEEEECCCCCCCCHH
T ss_conf             99999999808-99--5899965896646459


No 107
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=27.09  E-value=29  Score=14.37  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=79.9

Q ss_pred             HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHH--CCCCE
Q ss_conf             9999999972-99747999726981324989999999998619981289874343563434339999999862--59938
Q gi|254781065|r  131 TEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE--AGKPV  207 (352)
Q Consensus       131 ~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~--~~~~~  207 (352)
                      ..++++++.+ .-.+..++=.||||..-.+  ..++|+.+.+-|+.+.|=+---. .-.++|   ++++.+++  ..||+
T Consensus       181 ~~ei~~~~~~~g~G~S~~VsiGnd~~~g~~--~~D~L~~~~~Dp~Tk~Ivly~E~-~g~~e~---~~a~~~k~~~~~KPV  254 (334)
T 3mwd_B          181 SNELNNIISRTTDGVYEGVAIGGDRYPGST--FMDHVLRYQDTPGVKMIVVLGEI-GGTEEY---KICRGIKEGRLTKPI  254 (334)
T ss_dssp             HHHHHHHHHHHSSCEEEEEECCSSSSCSSC--HHHHHHHHHTCTTCCEEEEEEES-SSSHHH---HHHHHHHTTSCCSCE
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCC--HHHHHHHHCCCCCCCEEEEECCC-CCCHHH---HHHHHHHHCCCCCCE
T ss_conf             999999999829987589805888756874--99999986449998499998454-783799---999999855899988


Q ss_pred             EEEE-C-----------CCCHHHCC----HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             9993-3-----------69958869----99999999999879898232798623457889999999999986982
Q gi|254781065|r  208 YIAI-H-----------ANHPYEFS----EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIK  267 (352)
Q Consensus       208 ~iv~-H-----------~NHp~Elt----~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~  267 (352)
                      ++.. -           +-|.--+.    ..+..-...|+++|+.+-      +...|=.+++++++++|+..|+.
T Consensus       255 Va~kaGrsa~~~~~~~~mgHtGAia~~~~gsa~~k~~al~~aGv~vv------~~~~el~~~l~~~~~~l~~~G~i  324 (334)
T 3mwd_B          255 VCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP------RSFDELGEIIQSVYEDLVANGVI  324 (334)
T ss_dssp             EEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCC------SSGGGHHHHHHHHHHHHHHTTSC
T ss_pred             EEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEC------CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99997326777885555535312036898899999999998799687------99999999999999988657865


No 108
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1}
Probab=26.89  E-value=29  Score=14.35  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf             899999999997299747999726-98
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG-GD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD  153 (352)
                      -.++.++++.+.++++|+=|||+| |+
T Consensus        71 ~~~l~~~l~~~~~d~~v~~vVl~g~G~   97 (407)
T 3ju1_A           71 VRAMTVQLNLWKKDPLIACVVLDGSGE   97 (407)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             999999999997498957999980799


No 109
>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=26.72  E-value=9.5  Score=17.76  Aligned_cols=20  Identities=40%  Similarity=0.909  Sum_probs=15.4

Q ss_pred             CCCCEEECCCEEEEEECCCCCCHHHCCCCCC
Q ss_conf             8871452075379997274300000112233
Q gi|254781065|r   86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE  116 (352)
Q Consensus        86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~  116 (352)
                      -.||++||-           -.-||-|||..
T Consensus        23 ~~glIrKYg-----------L~~CRqCFre~   42 (50)
T 3jyv_N           23 HTGLVRKYD-----------LNICRQCFREK   42 (50)
T ss_dssp             CSSCCSSCS-----------CSSSSHHHHHH
T ss_pred             CCCEEEECC-----------CCHHHHHHHHH
T ss_conf             845531227-----------63067799998


No 110
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=26.48  E-value=17  Score=16.04  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8999999999972997479997269
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      -+++..+++.++++ +++=|||||.
T Consensus        35 ~~el~~al~~~~~d-~~~~vVl~g~   58 (261)
T 2gtr_A           35 MREVQSALSTAAAD-DSKLVLLSAV   58 (261)
T ss_dssp             HHHHHHHHHHHHHS-SCSCEEEEES
T ss_pred             HHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf             99999999998629-9769999789


No 111
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=26.47  E-value=25  Score=14.83  Aligned_cols=73  Identities=21%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             CHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEE
Q ss_conf             0000112233012555567898999999999972997479997269813249899999999986199812898743435
Q gi|254781065|r  107 VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP  185 (352)
Q Consensus       107 ~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~p  185 (352)
                      ++|+=|||-.+-+.......+.+++.+.+.-+.....+==-++.-=||-.--+..|.+++.      .-..|=+.+|.=
T Consensus        37 ~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~i~~~~~~Vl~VvD~~d~~~S~~~~l~~~~~------~k~iilV~NK~D  109 (369)
T 3ec1_A           37 VICQRCFRLKHYNEVQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA------DNPILLVGNKAD  109 (369)
T ss_dssp             ----------------------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT------TSCEEEEEECGG
T ss_pred             EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHC------CCCEEEEEECCC
T ss_conf             7856464666448466677998999999997523586699998778877450677999867------998899998832


No 112
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=26.45  E-value=30  Score=14.29  Aligned_cols=15  Identities=13%  Similarity=0.038  Sum_probs=7.2

Q ss_pred             CEEECCCEEEEEECC
Q ss_conf             145207537999727
Q gi|254781065|r   89 IVHRYPDRILLKLLH  103 (352)
Q Consensus        89 l~hkY~~rvLl~~t~  103 (352)
                      ++.+|.=++-|++++
T Consensus        62 ~L~~~~ikATFFv~G   76 (254)
T 2iw0_A           62 ILKQNDVRATFFVNG   76 (254)
T ss_dssp             HHHHHTCCCEEEECS
T ss_pred             HHHHCCCCEEEEEEC
T ss_conf             999779938999968


No 113
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=25.92  E-value=30  Score=14.23  Aligned_cols=53  Identities=21%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHH-HHCCCCCEEEE
Q ss_conf             98999999999972997479997-26981324-----98999999999-86199812898
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKT-LRYIKHVQILR  179 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~-L~~i~hv~~IR  179 (352)
                      +.+...+..++++++|+|.++.. ||+--+++     +...+..++.+ |.+++.|..+.
T Consensus        85 ~~~~~~~~~~~l~~~~~V~~~~~~tG~~dl~~~v~~~~~~~l~~~i~~~l~~~~gv~~~~  144 (163)
T 2gqq_A           85 APDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTR  144 (163)
T ss_dssp             STTHHHHHHHHHSSCTTEEEEEEESSSSSEEEEEECSSHHHHHHHTTTSSTTSSSCSEEE
T ss_pred             CCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             604567777752489777999996489849999998999999999999875389984999


No 114
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157}
Probab=25.71  E-value=30  Score=14.20  Aligned_cols=24  Identities=13%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             699999999999987989823279
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSV  242 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsV  242 (352)
                      +|++=.+|++.|.+.|+.+.-|.|
T Consensus       127 l~~ee~~~lk~l~~~Gv~v~~Q~v  150 (168)
T 3eye_A          127 VDDQDLTDLRFIKQRGVNVFIQDV  150 (168)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             199999999999977987999989


No 115
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=25.71  E-value=30  Score=14.20  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH
Q ss_conf             699999999999987989823279862345788999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT  260 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~  260 (352)
                      ++++=.++++.|.+.|+.+..|.+=    +|....+.++.++
T Consensus       125 l~~ee~~~lk~l~~~Gv~v~~Q~vP----~d~~~~~~~~~kk  162 (165)
T 1vsq_C          125 VDEKDIEAFKKLNARGIELEVRKVS----TDPKLKMMDLISK  162 (165)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH
T ss_conf             0899999999999779879999895----9971579999987


No 116
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=25.62  E-value=16  Score=16.21  Aligned_cols=77  Identities=21%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHCCCEEEECHHHH----HCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             999999999998798982327986----2345788999999999998698242301134576521011869999999999
Q gi|254781065|r  221 EEAIAAISRLANAGIILLSQSVLL----KGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVAS  296 (352)
Q Consensus       221 ~~~~~A~~~L~~~Gv~v~nQsVLL----kgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~  296 (352)
                      ..+.+|++.|+++|..+..=.|++    .|.+++.+.+....+.+-+.||.=|.|+-.+.+-...+=+++.++...|.+.
T Consensus       139 ~S~~eai~~l~~~G~~V~~~~vivDR~e~g~~~~~~~~~a~~~~~~~~gi~v~Sl~~l~~li~~~~~~i~~e~~~~i~~y  218 (226)
T 2ps1_A          139 TAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQTVSKKYGIPVLSIVSLIHIITYLEGRITAEEKSKIEQY  218 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEEECCBBSCTTCSSCCBHHHHHHHHHTCCEEEEEEHHHHHHHHGGGCCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEEEEEEEECHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             45899999999879989999999971120455542210179999986498199973499999998657999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781065|r  297 L  297 (352)
Q Consensus       297 l  297 (352)
                      +
T Consensus       219 ~  219 (226)
T 2ps1_A          219 L  219 (226)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 117
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426}
Probab=24.99  E-value=31  Score=14.11  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             999999999972997479997269
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGG  152 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGG  152 (352)
                      .++.++++.+.++++|+=|||+||
T Consensus        38 ~~l~~~l~~~~~d~~vr~vil~g~   61 (265)
T 2ppy_A           38 KEFNAAIDDIRFDPDIKVVIVMSD   61 (265)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             999999999984999659999617


No 118
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=24.71  E-value=32  Score=14.08  Aligned_cols=34  Identities=12%  Similarity=0.158  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHC--CCCCEEEEEECCEEEEEHHHCCH
Q ss_conf             99999999861--99812898743435634343399
Q gi|254781065|r  161 RLQKVLKTLRY--IKHVQILRFHSRVPIVDPQRINP  194 (352)
Q Consensus       161 ~L~~ll~~L~~--i~hv~~IRi~TR~pv~~P~Rit~  194 (352)
                      .+..++..|.+  -+++..++-+....-+.|..++.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~idi~~~~~sK  199 (282)
T 1rkq_A          164 ILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNK  199 (282)
T ss_dssp             HHHHHHHHSCHHHHHHEEEEEEETTEEEEEETTCSH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCH
T ss_conf             689999999876156548998546078964899626


No 119
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3
Probab=24.43  E-value=32  Score=14.04  Aligned_cols=24  Identities=8%  Similarity=0.208  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             899999999997299747999726
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG  151 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG  151 (352)
                      ..++..+++.+.++++|+=|||||
T Consensus        39 ~~el~~~l~~~~~d~~vr~vvl~g   62 (264)
T 1wz8_A           39 HRGLARVWRDLEAVEGVRAVLLRG   62 (264)
T ss_dssp             HHHHHHHHHHHTTCTTCSEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999999999986689986999978


No 120
>1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} SCOP: c.56.4.1
Probab=24.40  E-value=32  Score=14.04  Aligned_cols=11  Identities=18%  Similarity=0.489  Sum_probs=4.0

Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999998798
Q gi|254781065|r  225 AAISRLANAGI  235 (352)
Q Consensus       225 ~A~~~L~~~Gv  235 (352)
                      +.++++.+.|+
T Consensus       121 ~l~~~l~~~g~  131 (215)
T 1aug_A          121 RIVEEIKKEGI  131 (215)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHCCC
T ss_conf             99998886699


No 121
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=24.32  E-value=13  Score=16.73  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCC--CCEEEEECCCCHHHCCHHHHHHH----HHHHHCCCEEEECHHH
Q ss_conf             61998128987434356343433999999986259--93899933699588699999999----9999879898232798
Q gi|254781065|r  170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAG--KPVYIAIHANHPYEFSEEAIAAI----SRLANAGIILLSQSVL  243 (352)
Q Consensus       170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~--~~~~iv~H~NHp~Elt~~~~~A~----~~L~~~Gv~v~nQsVL  243 (352)
                      .++|.|.++|+..-.--..=+++-+.+.+.....+  ..-+++.-+..-+.++.-+.+++    +.+++.|+.++     
T Consensus        26 ~~~p~v~I~r~~g~L~F~na~~~~~~i~~~~~~~~~~~~k~vVld~~~v~~iD~tg~~~L~~l~~~l~~~gi~l~-----  100 (143)
T 3llo_A           26 KEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVY-----  100 (143)
T ss_dssp             BCCTTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEE-----
T ss_pred             CCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE-----
T ss_conf             256999999848985771228888887666420257982599999668985887999999999999997799999-----


Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             6234578899999999999869824230113457652101186999999
Q gi|254781065|r  244 LKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQK  292 (352)
Q Consensus       244 LkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~  292 (352)
                      +.|++.+.  +    +.|.+.|.       .+...+..+|-.++++|..
T Consensus       101 la~~~~~v--~----~~l~~~g~-------~~~~~~~~~~F~sv~dAV~  136 (143)
T 3llo_A          101 LAGCSAQV--V----NDLTSNRF-------FENPALKELLFHSIHDAVL  136 (143)
T ss_dssp             EESCCHHH--H----HHHHHTTT-------TSSGGGGGGEESSHHHHHH
T ss_pred             EEECCHHH--H----HHHHHCCC-------HHHCCCCCEEECCHHHHHH
T ss_conf             98098799--9----99998799-------1214765535899999999


No 122
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=24.29  E-value=32  Score=14.02  Aligned_cols=102  Identities=18%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH---HHHHHHHHHCCCCCEEEEEEC-CEEEEEHHHCCH-HHHHHHH
Q ss_conf             98999999999972997479997269813249899---999999986199812898743-435634343399-9999986
Q gi|254781065|r  127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR---LQKVLKTLRYIKHVQILRFHS-RVPIVDPQRINP-ELIQCLK  201 (352)
Q Consensus       127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~---L~~ll~~L~~i~hv~~IRi~T-R~pv~~P~Rit~-~L~~~l~  201 (352)
                      ++.+++..+.-..+ -.|++|+.=+|||-.-.+..   =.+++.-++....   ..|+. =.|-..|+.-+. .-++.|+
T Consensus        95 ~~~~l~~~L~~~~~-~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~---~~igva~yPe~hp~~~~~~~d~~~lk  170 (304)
T 3fst_A           95 TPDELRTIARDYWN-NGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVAD---FDISVAAYPEVHPEAKSAQADLLNLK  170 (304)
T ss_dssp             CHHHHHHHHHHHHH-TTCCEEEEECCCCC------CCCHHHHHHHHHHHCC---CEEEEEECTTCCTTCSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999998-397707661688888889876008999999986167---88735117877865215777799999


Q ss_pred             H---CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE
Q ss_conf             2---5993899933699588699999999999987989
Q gi|254781065|r  202 E---AGKPVYIAIHANHPYEFSEEAIAAISRLANAGII  236 (352)
Q Consensus       202 ~---~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~  236 (352)
                      +   .|- -+++|++--=.|   ...+-+++++++|+.
T Consensus       171 ~Kv~aGA-~fiiTQ~~FD~~---~~~~~~~~~~~~Gi~  204 (304)
T 3fst_A          171 RKVDAGA-NRAITQFFFDVE---SYLRFRDRCVSAGID  204 (304)
T ss_dssp             HHHHHTC-CEEEECCCSCHH---HHHHHHHHHHHTTCC
T ss_pred             HHHHCCC-CEEEEHHEECHH---HHHHHHHHHHHCCCC
T ss_conf             9997276-607410100499---999999999976997


No 123
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis}
Probab=24.12  E-value=32  Score=14.00  Aligned_cols=54  Identities=11%  Similarity=0.151  Sum_probs=30.0

Q ss_pred             HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCEEEEEHHHCCH
Q ss_conf             999729974799972698132498999999999861-99812898743435634343399
Q gi|254781065|r  136 AYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY-IKHVQILRFHSRVPIVDPQRINP  194 (352)
Q Consensus       136 ~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~-i~hv~~IRi~TR~pv~~P~Rit~  194 (352)
                      +.+..++....++....++     +.+..+.+.+.+ .+++...+.+....-+.|..++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~ldi~p~~~sK  203 (290)
T 3dnp_A          149 DLLMDEPVSAPVIEVYTEH-----DIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSK  203 (290)
T ss_dssp             HHHHHSCCCCSEEEEECCG-----GGHHHHHHHHHHHCTTEEEEEEETTEEEEEETTCCH
T ss_pred             HHHHCCCCCCEEEEECCCH-----HHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCHH
T ss_conf             8851144331489971737-----799999999998679779999858457861685245


No 124
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=23.84  E-value=33  Score=13.96  Aligned_cols=39  Identities=23%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             6999999999999879898232798623457889999999999
Q gi|254781065|r  219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF  261 (352)
Q Consensus       219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L  261 (352)
                      ++++=.++++.|.+.|+.+.-|.+=    +|....+.++.+++
T Consensus       123 l~~ee~~~l~~l~~~Gv~v~~q~vP----~d~~~~~~~~lkk~  161 (163)
T 1ble_A          123 VTEQDIKAFETLSDKGVKLELRQLP----SDASEDFVQILRNV  161 (163)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHTT
T ss_pred             ECHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHHH
T ss_conf             2899999999999769879999894----99610699999753


No 125
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=23.75  E-value=33  Score=13.95  Aligned_cols=39  Identities=8%  Similarity=0.014  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             899999999997299747999726981324989999999
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVL  166 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll  166 (352)
                      -.++.++++.+.++++++=|||||....--+-..|.++.
T Consensus        41 ~~~l~~~l~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~   79 (258)
T 3lao_A           41 LADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELA   79 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHG
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHC
T ss_conf             999999999997399965999977998661587466525


No 126
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=23.55  E-value=33  Score=13.93  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHC--CHHHHHHHHHHHHCCCEE
Q ss_conf             99999986259938999336995886--999999999999879898
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHPYEF--SEEAIAAISRLANAGIIL  237 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp~El--t~~~~~A~~~L~~~Gv~v  237 (352)
                      ..+...|++.+-++.++.-|+|=-=+  .....+|+..|+++|-.+
T Consensus        80 a~is~~LA~agIsif~iSty~tD~ilV~~~~~~~A~~~L~~~G~~v  125 (134)
T 1zhv_A           80 LSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHSL  125 (134)
T ss_dssp             HHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHCCCEE
T ss_conf             9998999877996599875417479988789999999999889999


No 127
>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N
Probab=23.52  E-value=10  Score=17.51  Aligned_cols=20  Identities=35%  Similarity=0.855  Sum_probs=15.5

Q ss_pred             CCCCEEECCCEEEEEECCCCCCHHHCCCCCC
Q ss_conf             8871452075379997274300000112233
Q gi|254781065|r   86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE  116 (352)
Q Consensus        86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~  116 (352)
                      -.||++||-           -.-||-|||..
T Consensus        27 ~~glIrKYg-----------L~~CRqCFre~   46 (56)
T 2zkq_n           27 RHGLIRKYG-----------LNMCRQCFRQY   46 (56)
T ss_dssp             STTCCTTTC-----------CCSCHHHHHHT
T ss_pred             CCCEEEEEC-----------CCHHHHHHHHH
T ss_conf             743110017-----------32288899988


No 128
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=23.52  E-value=33  Score=13.92  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=24.4

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHC-CHHHHHHHHHHHHCCCEEEE
Q ss_conf             99999986259938999336995886-99999999999987989823
Q gi|254781065|r  194 PELIQCLKEAGKPVYIAIHANHPYEF-SEEAIAAISRLANAGIILLS  239 (352)
Q Consensus       194 ~~L~~~l~~~~~~~~iv~H~NHp~El-t~~~~~A~~~L~~~Gv~v~n  239 (352)
                      .++++.|+++. .|.+.+..-.--.. .++.++++++|.++|+.|.-
T Consensus        99 ~~va~FL~~~~-~v~L~If~sRLY~~~~~~~q~GLr~L~~aG~~v~i  144 (190)
T 2nyt_A           99 DRIIKTLSKTK-NLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI  144 (190)
T ss_dssp             HHHHHHHHHCT-TEEEEEEEEECSSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCC-CEEEEEEHHHHHHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf             99999998789-90799886351352687799999999987996896


No 129
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.51  E-value=33  Score=13.92  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHH---HHCCCCE
Q ss_conf             9999999972997479997269813249899999999986199812898743435634343399999998---6259938
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCL---KEAGKPV  207 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l---~~~~~~~  207 (352)
                      +++++.-.++..+=-|||+|.|     .+   ..+|.+--.|| |-.|.+..           .++++.|   ++++.++
T Consensus        38 l~~~~~iA~~l~~~~DVIISRG-----gT---a~~Ir~~~~iP-VVeI~vs~-----------~Dil~al~~a~~~~~ki   97 (196)
T 2q5c_A           38 LTRASKIAFGLQDEVDAIISRG-----AT---SDYIKKSVSIP-SISIKVTR-----------FDTMRAVYNAKRFGNEL   97 (196)
T ss_dssp             HHHHHHHHHHHTTTCSEEEEEH-----HH---HHHHHTTCSSC-EEEECCCH-----------HHHHHHHHHHGGGCSEE
T ss_pred             HHHHHHHHHHHHCCCCEEEECC-----HH---HHHHHHHCCCC-EEEECCCH-----------HHHHHHHHHHHHHCCCE
T ss_conf             9999999997543987999896-----58---99999828997-79980788-----------79999999999758978


Q ss_pred             EEEECCCCHHHC------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             999336995886------------------99999999999987989823279862345788999999999998698242
Q gi|254781065|r  208 YIAIHANHPYEF------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPY  269 (352)
Q Consensus       208 ~iv~H~NHp~El------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PY  269 (352)
                      .++.+-|-..++                  ..++.++++.+++.|+.+.-=..+.             ++.--+.|+..+
T Consensus        98 avvgf~~~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~-------------~~~A~~~Gl~~i  164 (196)
T 2q5c_A           98 ALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTV-------------TDEAIKQGLYGE  164 (196)
T ss_dssp             EEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHH-------------HHHHHHTTCEEE
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHH-------------HHHHHHCCCCEE
T ss_conf             9996785015899999985995599996688999999999998699899998799-------------999998599789


Q ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             30113457652101186999999999
Q gi|254781065|r  270 YLHHPDLAAGTSHFRLTIEEGQKIVA  295 (352)
Q Consensus       270 Yl~~~d~v~G~~hf~v~~~~~~~i~~  295 (352)
                      -+.-     |..-.+--+++|.++.+
T Consensus       165 li~S-----g~eSI~~Al~eA~~l~~  185 (196)
T 2q5c_A          165 TINS-----GEESLRRAIEEALNLIE  185 (196)
T ss_dssp             ECCC-----CHHHHHHHHHHHHHHHH
T ss_pred             EEEC-----CHHHHHHHHHHHHHHHH
T ss_conf             9965-----49999999999999999


No 130
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=23.44  E-value=33  Score=13.91  Aligned_cols=139  Identities=12%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC--CHHHHHHHHHHHHCC---C
Q ss_conf             99999999861998128987434356343433999999986259938999336995886--999999999999879---8
Q gi|254781065|r  161 RLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF--SEEAIAAISRLANAG---I  235 (352)
Q Consensus       161 ~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El--t~~~~~A~~~L~~~G---v  235 (352)
                      .++..++.-.++. .+.|+++.-.  .-...-..++++..++++.  -+..| ||+...  +.+...++..+.+.+   +
T Consensus        85 ~~~~~l~~A~~lG-a~~v~~~~g~--~~~~~~l~~l~~~a~~~Gv--~l~lE-nh~~~~~~~~~~~~~~~~~~~~~~~~v  158 (264)
T 1yx1_A           85 ELEPTLRRAEACG-AGWLKVSLGL--LPEQPDLAALGRRLARHGL--QLLVE-NDQTPQGGRIEVLERFFRLAERQQLDL  158 (264)
T ss_dssp             THHHHHHHHHHTT-CSEEEEEEEC--CCSSCCHHHHHHHHTTSSC--EEEEE-CCSSHHHHCHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHCC-CCEEEECCCC--CCCHHHHHHHHHHHHHCCC--EEEEE-CCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             9999999999859-7989989888--4101139999999997398--89996-589846687889999999865269854


Q ss_pred             EEEE--CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             9823--2798623457889999999999986982423011345765210118---6999999999999828886541066
Q gi|254781065|r  236 ILLS--QSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVASLKEKISGLCQPFYI  310 (352)
Q Consensus       236 ~v~n--QsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~~l~~~lsG~~~P~~v  310 (352)
                      .+.-  =-....|  .|+...   .+.+   +=+=.|+|..|-..+...-.+   +...++.=+.++-+.+ |+..| +.
T Consensus       159 g~~~D~~h~~~~g--~dp~~~---~~~l---~~~i~~vHvKD~~~~~~~~~~~~g~g~~~~~~~~~~L~~~-~~d~~-~~  228 (264)
T 1yx1_A          159 AMTFDIGNWRWQE--QAADEA---ALRL---GRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHF-PEGVA-RA  228 (264)
T ss_dssp             EEEEETTGGGGGT--CCHHHH---HHHH---GGGEEEEEECEEEECTTSCEEEECCCHHHHHHHHHHHTTS-CTTCE-EE
T ss_pred             EECCCCHHHHHCC--CCHHHH---HHHH---CCCEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHC-CCCCE-EE
T ss_conf             0046738888418--888999---9972---6847999956577788884525899999999999999847-99973-99


Q ss_pred             EECCC
Q ss_conf             31788
Q gi|254781065|r  311 LDLPG  315 (352)
Q Consensus       311 ~d~p~  315 (352)
                      +|.|.
T Consensus       229 lE~p~  233 (264)
T 1yx1_A          229 IEYPL  233 (264)
T ss_dssp             ECSCC
T ss_pred             EEECC
T ss_conf             98258


No 131
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=23.27  E-value=34  Score=13.89  Aligned_cols=42  Identities=21%  Similarity=0.182  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHHHHC
Q ss_conf             99999999972997479997-26981324-----98999999999861
Q gi|254781065|r  130 DTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKTLRY  171 (352)
Q Consensus       130 ~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~L~~  171 (352)
                      ..++..++++++|+|.++-. ||..-+++     +-+.|+.++.++..
T Consensus        77 ~~~~v~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~i~~  124 (144)
T 2cfx_A           77 DYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP  124 (144)
T ss_dssp             CHHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHCCC
T ss_conf             678899999649850268895078989999998999999999996588


No 132
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=22.47  E-value=35  Score=13.78  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHH-HHHHCCCCCEEEEEEC
Q ss_conf             9999999999729974799972698-1324-----989999999-9986199812898743
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVL-KTLRYIKHVQILRFHS  182 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll-~~L~~i~hv~~IRi~T  182 (352)
                      ...++..++|+++|+|.++-..-|+ -+++     +.+.+..++ +.|.++++|..++.+.
T Consensus        83 ~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t~~  143 (162)
T 2p5v_A           83 DAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSF  143 (162)
T ss_dssp             THHHHHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             2399999999848872799995378988899998999999999999974689976999999


No 133
>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ...
Probab=22.41  E-value=35  Score=13.78  Aligned_cols=136  Identities=14%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             CCCCCCHHHHHHHHHHHH----CCCCCEEEEEECCEEEEEHHHCC---HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHH
Q ss_conf             813249899999999986----19981289874343563434339---99999986259938999336995886999999
Q gi|254781065|r  153 DPLILSHKRLQKVLKTLR----YIKHVQILRFHSRVPIVDPQRIN---PELIQCLKEAGKPVYIAIHANHPYEFSEEAIA  225 (352)
Q Consensus       153 DPl~l~~~~L~~ll~~L~----~i~hv~~IRi~TR~pv~~P~Rit---~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~  225 (352)
                      +...+.++.-+++.+.+.    +-...+.+-++.|..-.......   ..-...+.   +.+.+.--+---+.+-+++.+
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~a~~glrvla~A~k~~~~~~~~~~~~~~~~~~~~e---~~l~~lG~~~~~D~lr~~~~~  609 (994)
T 1wpg_A          533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE---TDLTFVGVVGMLDPPRKEVMG  609 (994)
T ss_dssp             EEEECCHHHHHHHHHHHHHHTTSSCCCEEEEEEEESSCCCGGGCCTTCGGGHHHHT---CSEEEEEEEEEECCBCTTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEE---CCCEEEEEEEEECCCCCCHHH
T ss_conf             30138779999999999997640212444210003566102221003566303540---287899999862688700899


Q ss_pred             HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCC------------------CCCCCCC
Q ss_conf             999999879898232798623457889999999999986982423011-345765------------------2101186
Q gi|254781065|r  226 AISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH-PDLAAG------------------TSHFRLT  286 (352)
Q Consensus       226 A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~-~d~v~G------------------~~hf~v~  286 (352)
                      +++.|+++|+.+.    ++.|  |+.+|=....+++   |+.+.---. ...+.|                  .-.-|++
T Consensus       610 ~I~~l~~aGI~v~----mlTG--D~~~TA~~IA~~~---gi~~~~~~~~~~~~~g~e~~~l~~~e~~~~~~~~~VfaR~s  680 (994)
T 1wpg_A          610 SIQLCRDAGIRVI----MITG--DNKGTAIAICRRI---GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVE  680 (994)
T ss_dssp             HHHHHHHTTCEEE----EECS--SCHHHHHHHHHHT---TSSCTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESCC
T ss_pred             HHHHHHHCCCEEE----EECC--CCHHHHHHHHHHC---CCCCCCCCCHHHCCCHHHHHHCCHHHHHHHHHCCEEECCCC
T ss_conf             9999997889599----9589--9848999999984---99887652002026536565399999997552053651678


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999982
Q gi|254781065|r  287 IEEGQKIVASLKEK  300 (352)
Q Consensus       287 ~~~~~~i~~~l~~~  300 (352)
                      -++-.+|++.++.+
T Consensus       681 P~qK~~iV~~lq~~  694 (994)
T 1wpg_A          681 PSHKSKIVEYLQSY  694 (994)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             89999999998518


No 134
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A
Probab=22.07  E-value=35  Score=13.73  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=15.2

Q ss_pred             HHCCCCCEEEEEECCEEEEEHHHCCH
Q ss_conf             86199812898743435634343399
Q gi|254781065|r  169 LRYIKHVQILRFHSRVPIVDPQRINP  194 (352)
Q Consensus       169 L~~i~hv~~IRi~TR~pv~~P~Rit~  194 (352)
                      ++..+.+..++.+....-+.|..++.
T Consensus       159 ~~~~~~~~~~~~~~~~iei~~~~~~K  184 (258)
T 2pq0_A          159 VRNYPEFRFVRWHDVSTDVLPAGGSK  184 (258)
T ss_dssp             HHHCTTEEEEEEETTEEEEEESSCCH
T ss_pred             HHHCCCCEEEEECCCEEEEEECCCCH
T ss_conf             86285422898758369996588507


No 135
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=21.95  E-value=36  Score=13.71  Aligned_cols=46  Identities=13%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHCCCC-EEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH
Q ss_conf             399999998625993-89993369958869999999999998798982327
Q gi|254781065|r  192 INPELIQCLKEAGKP-VYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       192 it~~L~~~l~~~~~~-~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs  241 (352)
                      .|+.++++|++++-+ .++++--    -+.....+.++++.++|..+.|.|
T Consensus       121 ~t~~iL~~L~~~~v~ATFFv~G~----~i~~~~~~~~k~~~~~GheIgnHt  167 (311)
T 2w3z_A          121 MTPKILDVLAQQHVHATFFLVGC----NITDKVKPILQRQITEGHALGIHS  167 (311)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECGG----GCCGGGHHHHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHHHCCCCEEEEECCC----CHHHCHHHHHHHHHHCCCEEEEEC
T ss_conf             18999999998599789982574----343456999999997498898303


No 136
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=21.49  E-value=36  Score=13.65  Aligned_cols=26  Identities=15%  Similarity=0.196  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf             899999999997299747999726-98
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTG-GD  153 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD  153 (352)
                      -.++..+++.+..+++|+=|||+| |+
T Consensus        33 ~~~l~~~l~~~~~d~~v~~vvl~g~g~   59 (260)
T 1sg4_A           33 LTELVISLEKLENDKSFRGVILTSDRP   59 (260)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESST
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999998589955999982899


No 137
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=21.32  E-value=37  Score=13.63  Aligned_cols=28  Identities=7%  Similarity=0.124  Sum_probs=20.8

Q ss_pred             CCCCHHHHHHHC-----CCCHHHHHHHHHHHHH
Q ss_conf             249988998641-----9998999999999853
Q gi|254781065|r    7 TLTSAQDLYNAN-----LIKKEQIDEIKEISNH   34 (352)
Q Consensus         7 ~i~s~~~L~~~l-----~Ls~e~~~~~~~~~~~   34 (352)
                      -.++.+.|++++     .|++++...+..|..+
T Consensus        17 rcss~eTLEkv~e~~~y~L~~~el~~f~~AaDH   49 (72)
T 1jw2_A           17 RCQTIDTLERVIEKNKYELSDNELAVFYSAADH   49 (72)
T ss_dssp             TSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             168587899999971055999999999999999


No 138
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=21.29  E-value=37  Score=13.62  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHH----CCHHHHHHHHHC
Q ss_conf             8999999999972997479997269813249899999999986199812898743435634343----399999998625
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQR----INPELIQCLKEA  203 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~R----it~~L~~~l~~~  203 (352)
                      .+-+++-++-+.++-.+. +|-+|   ++-+.+.++.+.+.|++.+....+=    -|+..+..    .+++.++.+++.
T Consensus        79 ~~~i~~Ql~al~~d~~~~-aIKiG---~l~s~~~i~~v~~~l~~~~~~~~v~----dpv~~~~~g~~~~~~~~~~~~~~~  150 (288)
T 1jxh_A           79 PDFVAAQLDSVFSDVRID-TTKIG---MLAETDIVEAVAERLQRHHVRNVVL----DTVMLAKSGDPLLSPSAIETLRVR  150 (288)
T ss_dssp             HHHHHHHHHHHHTTSCCS-EEEEC---CCCSHHHHHHHHHHHHHTTCCSEEE----ECCCC------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCC-EEEEC---CCCCHHHHHHHHHHHHHCCCCCEEE----CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999999985258888-89997---7475888899999998679987786----567667888603368999999984


Q ss_pred             CCC-EEEEE-CCCCHHHC--------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH
Q ss_conf             993-89993-36995886--------99999999999987989823279862345788
Q gi|254781065|r  204 GKP-VYIAI-HANHPYEF--------SEEAIAAISRLANAGIILLSQSVLLKGINDDP  251 (352)
Q Consensus       204 ~~~-~~iv~-H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~  251 (352)
                      =.| ..++| ...-..+|        .++..+|.++|.+.|.    +.|++||...+.
T Consensus       151 Llp~adlITPN~~Ea~~Ll~~~~~~~~~~~~~aa~~l~~~G~----~~VlikG~~~~~  204 (288)
T 1jxh_A          151 LLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGC----EAVLMKGGHLED  204 (288)
T ss_dssp             TGGGCSEEECBHHHHHHHHTCCCCCSHHHHHHHHHHHHHTTC----SEEEEBC-----
T ss_pred             CCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC----CEEEECCCCCCC
T ss_conf             504151716878999999657833476999999999976679----779977765777


No 139
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=21.13  E-value=29  Score=14.30  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             ECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             32798623457889999999999986982423011345765210118699999999999982888654
Q gi|254781065|r  239 SQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQ  306 (352)
Q Consensus       239 nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~  306 (352)
                      ...|+|.|.+|+                   +++.-||..|....+.+.++-.+.++    ...-.|+
T Consensus       177 ~H~vVl~GYd~~-------------------~v~v~DP~~g~~~~~~~~~~F~~~w~----~~G~~Av  221 (236)
T 3erv_A          177 EHCVVLIGYDQE-------------------SVYIRDPLKDSLDVKVPREKFEQAWV----QMGSQAI  221 (236)
T ss_dssp             EEEEEEEEECSS-------------------EEEEECTTSCCSCCEEEHHHHHHHHH----HTTCCEE
T ss_pred             CEEEEEEEECCC-------------------EEEEECCCCCCCCEEECHHHHHHHHH----HHCCEEE
T ss_conf             829999997599-------------------79998889986127976999999999----8498999


No 140
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=20.98  E-value=37  Score=13.58  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             9999999999729974799972698
Q gi|254781065|r  129 KDTEAALAYIQEKSQIWEVIFTGGD  153 (352)
Q Consensus       129 ~~~~~~~~Yi~~~~eI~eVilSGGD  153 (352)
                      .++..+++.+.++++++=|||+|+.
T Consensus        30 ~~l~~al~~~~~d~~v~~vvl~~~g   54 (254)
T 3gow_A           30 DALYAALKEGEEDREVRALLLTGAG   54 (254)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             9999999999768893899996789


No 141
>1isp_A Lipase; alpha/beta hydrolase fold; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3d2b_A 3d2c_A
Probab=20.87  E-value=37  Score=13.64  Aligned_cols=19  Identities=5%  Similarity=-0.017  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHCCCEEEEEE
Q ss_conf             9999999972997479997
Q gi|254781065|r  131 TEAALAYIQEKSQIWEVIF  149 (352)
Q Consensus       131 ~~~~~~Yi~~~~eI~eVil  149 (352)
                      +.+.++.+.++...+.|.|
T Consensus        55 l~~~i~~~~~~~~~~~v~l   73 (181)
T 1isp_A           55 LSRFVQKVLDETGAKKVDI   73 (181)
T ss_dssp             HHHHHHHHHHHHCCSCEEE
T ss_pred             HHHHHHHHHHHCCCCCEEE
T ss_conf             9999999998719882899


No 142
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=20.18  E-value=39  Score=13.47  Aligned_cols=47  Identities=17%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCC--------CCC---------HHHHHHHHHHHHCCCC
Q ss_conf             8999999999972997479997269813--------249---------8999999999861998
Q gi|254781065|r  128 SKDTEAALAYIQEKSQIWEVIFTGGDPL--------ILS---------HKRLQKVLKTLRYIKH  174 (352)
Q Consensus       128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl--------~l~---------~~~L~~ll~~L~~i~h  174 (352)
                      ..++.++++.+..+++|+=|+++|++..        .+.         ...+..++.++...+-
T Consensus        32 ~~~l~~~l~~~~~d~~v~vvvl~g~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~k   95 (257)
T 2ej5_A           32 NAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEK   95 (257)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999964989089999789988657776798642000135677666789998753699


Done!