Query gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 352 No_of_seqs 148 out of 661 Neff 5.4 Searched_HMMs 23785 Date Wed Jun 1 00:09:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781065.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2a5h_A L-lysine 2,3-aminomutas 100.0 0 0 721.6 28.8 346 2-350 23-368 (416) 2 1tv8_A MOAA, molybdenum cofact 99.5 2.3E-11 9.8E-16 99.8 18.8 189 97-297 16-223 (340) 3 3c8f_A Pyruvate formate-lyase 99.1 7.9E-09 3.3E-13 81.9 15.4 159 102-269 26-196 (245) 4 3iix_A Biotin synthetase, puta 99.0 1.6E-07 6.5E-12 72.8 20.5 198 96-307 54-266 (348) 5 2yx0_A Radical SAM enzyme; pre 98.7 2.2E-07 9.3E-12 71.7 12.1 227 99-346 74-341 (342) 6 2qgq_A Protein TM_1862; alpha- 98.6 3.2E-06 1.3E-10 63.5 13.7 185 95-286 4-205 (304) 7 1r30_A Biotin synthase; SAM ra 98.5 8.8E-05 3.7E-09 53.3 19.1 195 97-306 67-282 (369) 8 2z2u_A UPF0026 protein MJ0257; 98.4 1.3E-06 5.5E-11 66.2 8.0 192 97-306 53-288 (311) 9 1olt_A Oxygen-independent copr 98.2 0.00019 8E-09 51.0 16.3 204 96-303 53-279 (457) 10 3can_A Pyruvate-formate lyase- 97.9 0.00066 2.8E-08 47.1 14.6 109 147-266 7-124 (182) 11 1vp8_A Hypothetical protein AF 90.0 0.21 8.7E-06 29.5 3.3 89 204-319 66-169 (201) 12 1v93_A 5,10-methylenetetrahydr 79.2 3.6 0.00015 20.8 8.7 101 127-236 84-201 (296) 13 3h75_A Periplasmic sugar-bindi 71.5 5.5 0.00023 19.4 7.1 107 145-260 146-253 (350) 14 2f06_A Conserved hypothetical 68.2 2.1 8.7E-05 22.5 1.9 77 219-296 51-130 (144) 15 3fdu_A Putative enoyl-COA hydr 67.6 6.6 0.00028 18.9 4.7 39 128-166 34-72 (266) 16 3lke_A Enoyl-COA hydratase; ny 65.2 4.1 0.00017 20.3 3.0 27 128-154 33-59 (263) 17 1dci_A Dienoyl-COA isomerase; 65.2 3.1 0.00013 21.2 2.3 28 128-155 33-60 (275) 18 1yj5_A 5' polynucleotide kinas 63.6 7.8 0.00033 18.4 4.8 57 224-295 266-322 (383) 19 1e5e_A MGL, methionine gamma-l 63.4 7.9 0.00033 18.3 4.6 97 132-234 272-399 (404) 20 2dky_A RHO-GTPase-activating p 63.0 4.5 0.00019 20.1 2.8 43 221-263 21-75 (91) 21 2ia0_A Putative HTH-type trans 62.8 8.1 0.00034 18.3 6.2 53 128-180 94-152 (171) 22 3myb_A Enoyl-COA hydratase; ss 60.8 5.2 0.00022 19.6 2.8 27 128-154 55-81 (286) 23 1cs1_A CGS, protein (cystathio 57.9 9.7 0.00041 17.7 4.2 14 248-261 305-318 (386) 24 2h80_A STAR-related lipid tran 57.4 3.5 0.00015 20.8 1.5 43 221-263 19-73 (81) 25 3g64_A Putative enoyl-COA hydr 57.1 2.2 9.2E-05 22.3 0.4 25 128-152 46-70 (279) 26 1lva_A Selenocysteine-specific 56.2 10 0.00044 17.5 7.7 185 125-320 28-232 (258) 27 2q35_A CURF; crotonase, lyase; 55.5 11 0.00045 17.4 5.0 41 128-168 32-72 (243) 28 2pju_A Propionate catabolism o 54.3 11 0.00047 17.3 4.9 130 129-297 46-198 (225) 29 2hz5_A Dynein light chain 2A, 53.8 11 0.00048 17.2 5.9 63 127-189 10-92 (106) 30 2pbp_A Enoyl-COA hydratase sub 53.1 12 0.00049 17.2 3.8 32 128-159 34-65 (258) 31 2iex_A Dihydroxynapthoic acid 52.5 8 0.00034 18.3 2.7 25 128-152 41-65 (272) 32 3p5m_A Enoyl-COA hydratase/iso 51.2 12 0.0005 17.1 3.4 106 128-233 35-197 (255) 33 3pea_A Enoyl-COA hydratase/iso 50.9 12 0.0005 17.1 3.4 27 128-154 34-60 (261) 34 1hzd_A AUH, AU-binding protein 50.2 11 0.00045 17.4 3.0 26 128-153 41-67 (272) 35 2fq6_A Cystathionine beta-lyas 49.8 9.9 0.00042 17.6 2.8 17 89-105 192-208 (415) 36 1cbf_A Cobalt-precorrin-4 tran 49.6 13 0.00055 16.8 4.8 152 129-311 81-244 (285) 37 2zf8_A MOTY, component of sodi 48.7 13 0.00057 16.7 3.8 173 143-345 82-273 (278) 38 1wdk_A Fatty oxidation complex 48.1 6.9 0.00029 18.8 1.8 11 207-217 446-456 (715) 39 1w79_A D-alanyl-D-alanine carb 48.0 14 0.00058 16.6 3.9 49 252-300 322-370 (489) 40 3h02_A Naphthoate synthase; ID 47.8 8.4 0.00036 18.1 2.2 25 128-152 56-80 (288) 41 2e1c_A Putative HTH-type trans 47.7 14 0.00059 16.6 6.8 52 129-180 98-155 (171) 42 3eno_A Putative O-sialoglycopr 47.7 11 0.00048 17.2 2.8 25 143-170 249-273 (334) 43 3l7h_A RE64145P, roadblock; LC 46.8 14 0.0006 16.5 4.1 56 129-184 3-76 (97) 44 1mj3_A Enoyl-COA hydratase, mi 46.6 14 0.00061 16.5 3.7 27 129-155 37-63 (260) 45 3en9_A Glycoprotease, O-sialog 45.9 15 0.00062 16.4 3.3 33 141-176 246-278 (540) 46 1t6s_A Conserved hypothetical 45.4 15 0.00063 16.4 4.8 103 147-265 15-133 (162) 47 1byr_A Protein (endonuclease); 45.1 15 0.00064 16.3 7.3 68 194-268 17-84 (155) 48 1pgv_A TMD-1, tropomodulin TMD 45.0 15 0.00064 16.3 8.6 91 130-232 28-123 (197) 49 3i47_A Enoyl COA hydratase/iso 45.0 15 0.00064 16.3 3.3 28 128-155 33-60 (268) 50 1uiy_A Enoyl-COA hydratase; ly 44.9 15 0.00064 16.3 3.8 24 128-151 28-51 (253) 51 2rjo_A Twin-arginine transloca 44.0 16 0.00066 16.2 8.8 116 132-258 123-241 (332) 52 2z6r_A Diphthine synthase; met 42.1 17 0.00071 16.0 3.9 141 130-289 66-223 (265) 53 3gkb_A Putative enoyl-COA hydr 42.1 17 0.00071 16.0 3.4 27 128-154 37-63 (287) 54 1pjq_A CYSG, siroheme synthase 41.6 17 0.00072 16.0 4.4 146 131-311 283-440 (457) 55 3ir2_A DNA DC->DU-editing enzy 41.2 15 0.00064 16.3 2.7 23 162-184 115-137 (207) 56 3hsi_A Phosphatidylserine synt 40.8 18 0.00074 15.9 5.5 44 191-238 258-302 (458) 57 2cyy_A Putative HTH-type trans 40.8 18 0.00074 15.9 7.4 52 130-181 79-136 (151) 58 3h2y_A GTPase family protein; 40.5 14 0.00059 16.6 2.4 73 107-185 35-107 (368) 59 3jxp_A Coenzyme PQQ synthesis 40.4 8.6 0.00036 18.1 1.3 44 194-237 253-296 (321) 60 1i1g_A Transcriptional regulat 40.0 18 0.00076 15.8 5.1 52 130-181 76-134 (141) 61 3a1c_A Probable copper-exporti 40.0 12 0.00051 17.0 2.0 39 217-261 162-200 (287) 62 2j5i_A P-hydroxycinnamoyl COA 39.9 18 0.00076 15.8 4.3 27 128-154 38-64 (276) 63 2djw_A Probable transcriptiona 39.6 16 0.00068 16.1 2.6 51 129-179 13-70 (92) 64 2ivn_A O-sialoglycoprotein end 39.5 16 0.00067 16.2 2.6 31 240-270 247-277 (330) 65 1nzy_A Dehalogenase, 4-chlorob 38.8 19 0.00079 15.7 3.4 26 128-153 32-57 (269) 66 3kqf_A Enoyl-COA hydratase/iso 38.6 19 0.0008 15.6 3.4 27 128-154 38-64 (265) 67 2iye_A Copper-transporting ATP 38.5 17 0.00073 15.9 2.6 23 129-152 139-161 (263) 68 3f9r_A Phosphomannomutase; try 38.0 19 0.0008 15.6 2.8 16 19-34 21-36 (246) 69 3a3d_A PBP4, penicillin-bindin 37.5 20 0.00083 15.5 3.8 51 250-300 306-357 (453) 70 1q52_A MENB; lyase, structural 37.0 20 0.00084 15.5 3.4 25 128-152 66-90 (314) 71 3njd_A Enoyl-COA hydratase; ss 36.3 21 0.00086 15.4 3.4 25 128-152 64-88 (333) 72 3p85_A Enoyl-COA hydratase; ss 35.3 21 0.00089 15.3 3.2 52 88-154 26-80 (270) 73 1ub0_A THID, phosphomethylpyri 35.3 21 0.00089 15.3 5.4 107 126-252 53-180 (258) 74 3h0u_A Putative enoyl-COA hydr 35.0 20 0.00085 15.5 2.5 107 128-234 36-210 (289) 75 3mpo_A Predicted hydrolase of 34.6 22 0.00092 15.2 3.0 12 20-31 23-34 (279) 76 1zq1_A Glutamyl-tRNA(Gln) amid 34.3 22 0.00093 15.2 4.3 74 193-270 317-391 (438) 77 2np9_A DPGC; protein inhibitor 33.9 22 0.00094 15.2 3.2 26 128-153 196-221 (440) 78 2j5g_A ALR4455 protein; enzyme 33.5 23 0.00095 15.1 3.4 47 128-174 53-118 (263) 79 3knz_A Putative sugar binding 33.3 23 0.00096 15.1 9.8 93 128-238 35-128 (366) 80 3bex_A Type III pantothenate k 32.7 14 0.00058 16.6 1.4 88 127-217 38-133 (249) 81 3ome_A Enoyl-COA hydratase; ss 32.6 23 0.00098 15.0 3.4 25 128-152 52-76 (282) 82 2fbm_A Y chromosome chromodoma 32.3 17 0.0007 16.1 1.7 25 128-153 53-77 (291) 83 2a7k_A CARB; crotonase, antibi 32.2 24 0.001 15.0 8.7 27 128-154 29-55 (250) 84 2w25_A Probable transcriptiona 32.1 24 0.001 14.9 3.5 80 87-177 48-133 (150) 85 2zbc_A 83AA long hypothetical 32.0 24 0.001 14.9 6.2 50 130-179 14-70 (83) 86 1xvi_A MPGP, YEDP, putative ma 31.4 15 0.00065 16.3 1.4 11 20-30 27-37 (275) 87 1szo_A 6-oxocamphor hydrolase; 31.1 25 0.001 14.8 3.4 25 128-152 45-69 (257) 88 1pff_A Methionine gamma-lyase; 30.5 25 0.0011 14.8 2.8 18 133-150 209-226 (331) 89 1nrw_A Hypothetical protein, h 30.4 25 0.0011 14.8 2.9 18 134-152 29-46 (288) 90 1a2z_A Pyrrolidone carboxyl pe 30.3 25 0.0011 14.8 3.7 15 223-237 118-132 (220) 91 1nrz_A PTS system, sorbose-spe 30.1 26 0.0011 14.7 2.5 25 219-243 122-146 (164) 92 1w5d_A Penicillin-binding prot 30.0 26 0.0011 14.7 4.1 50 251-300 322-371 (462) 93 2cvi_A 75AA long hypothetical 29.7 26 0.0011 14.7 5.9 50 130-179 14-70 (83) 94 3niw_A Haloacid dehalogenase-l 29.7 26 0.0011 14.7 2.9 16 19-34 22-37 (279) 95 2ex2_A Penicillin-binding prot 29.5 26 0.0011 14.7 4.2 38 262-299 323-360 (458) 96 3moy_A Probable enoyl-COA hydr 29.3 26 0.0011 14.6 3.7 29 128-156 39-67 (263) 97 3lac_A Pyrrolidone-carboxylate 29.3 26 0.0011 14.6 3.1 10 162-171 118-127 (215) 98 1m1h_A Transcription antitermi 29.3 26 0.0011 14.6 4.3 39 133-171 148-186 (248) 99 2z99_A Putative uncharacterize 29.3 26 0.0011 14.6 4.8 102 147-260 23-138 (219) 100 1p8c_A Conserved hypothetical 29.3 12 0.00051 17.0 0.6 83 88-182 62-145 (145) 101 1t57_A Conserved protein MTH16 29.2 27 0.0011 14.6 6.1 41 205-248 74-119 (206) 102 1wr8_A Phosphoglycolate phosph 28.9 26 0.0011 14.7 2.2 16 19-34 20-35 (231) 103 1wde_A Probable diphthine synt 28.6 27 0.0011 14.6 2.4 25 145-171 85-109 (294) 104 2e0n_A Precorrin-2 C20-methylt 28.3 27 0.0012 14.5 5.6 39 129-171 84-122 (259) 105 2cg4_A Regulatory protein ASNC 27.4 28 0.0012 14.4 5.9 53 129-181 80-139 (152) 106 2bb3_A Cobalamin biosynthesis 27.3 16 0.00067 16.2 0.9 29 129-160 77-105 (221) 107 3mwd_B ATP-citrate synthase; A 27.1 29 0.0012 14.4 10.2 125 131-267 181-324 (334) 108 3ju1_A Enoyl-COA hydratase/iso 26.9 29 0.0012 14.3 3.9 26 128-153 71-97 (407) 109 3jyv_N 40S ribosomal protein S 26.7 9.5 0.0004 17.8 -0.3 20 86-116 23-42 (50) 110 2gtr_A CDY-like, chromodomain 26.5 17 0.0007 16.0 0.9 24 128-152 35-58 (261) 111 3ec1_A YQEH GTPase; atnos1, at 26.5 25 0.001 14.8 1.8 73 107-185 37-109 (369) 112 2iw0_A Chitin deacetylase; hyd 26.4 30 0.0012 14.3 3.6 15 89-103 62-76 (254) 113 2gqq_A Leucine-responsive regu 25.9 30 0.0013 14.2 4.2 53 127-179 85-144 (163) 114 3eye_A PTS system N-acetylgala 25.7 30 0.0013 14.2 2.5 24 219-242 127-150 (168) 115 1vsq_C Mannose-specific phosph 25.7 30 0.0013 14.2 2.5 38 219-260 125-162 (165) 116 2ps1_A Orotate phosphoribosylt 25.6 16 0.00066 16.2 0.6 77 221-297 139-219 (226) 117 2ppy_A Enoyl-COA hydratase; be 25.0 31 0.0013 14.1 3.4 24 129-152 38-61 (265) 118 1rkq_A Hypothetical protein YI 24.7 32 0.0013 14.1 2.9 34 161-194 164-199 (282) 119 1wz8_A Enoyl-COA hydratase; ly 24.4 32 0.0013 14.0 2.8 24 128-151 39-62 (264) 120 1aug_A Pyroglutamyl peptidase- 24.4 32 0.0013 14.0 3.1 11 225-235 121-131 (215) 121 3llo_A Prestin; STAS domain, c 24.3 13 0.00056 16.7 0.1 105 170-292 26-136 (143) 122 3fst_A 5,10-methylenetetrahydr 24.3 32 0.0014 14.0 9.5 102 127-236 95-204 (304) 123 3dnp_A Stress response protein 24.1 32 0.0014 14.0 2.9 54 136-194 149-203 (290) 124 1ble_A Fructose permease; phos 23.8 33 0.0014 14.0 2.5 39 219-261 123-161 (163) 125 3lao_A Enoyl-COA hydratase/iso 23.8 33 0.0014 14.0 3.4 39 128-166 41-79 (258) 126 1zhv_A Hypothetical protein AT 23.6 33 0.0014 13.9 3.0 44 194-237 80-125 (134) 127 2zkq_n 40S ribosomal protein S 23.5 10 0.00044 17.5 -0.6 20 86-116 27-46 (56) 128 2nyt_A Probable C->U-editing e 23.5 33 0.0014 13.9 4.2 45 194-239 99-144 (190) 129 2q5c_A NTRC family transcripti 23.5 33 0.0014 13.9 3.3 127 131-295 38-185 (196) 130 1yx1_A Hypothetical protein PA 23.4 33 0.0014 13.9 2.9 139 161-315 85-233 (264) 131 2cfx_A HTH-type transcriptiona 23.3 34 0.0014 13.9 4.6 42 130-171 77-124 (144) 132 2p5v_A Transcriptional regulat 22.5 35 0.0015 13.8 6.2 54 129-182 83-143 (162) 133 1wpg_A Sarcoplasmic/endoplasmi 22.4 35 0.0015 13.8 4.5 136 153-300 533-694 (994) 134 2pq0_A Hypothetical conserved 22.1 35 0.0015 13.7 2.8 26 169-194 159-184 (258) 135 2w3z_A Putative deacetylase; P 21.9 36 0.0015 13.7 4.3 46 192-241 121-167 (311) 136 1sg4_A 3,2-trans-enoyl-COA iso 21.5 36 0.0015 13.7 3.4 26 128-153 33-59 (260) 137 1jw2_A Hemolysin expression mo 21.3 37 0.0015 13.6 1.9 28 7-34 17-49 (72) 138 1jxh_A Phosphomethylpyrimidine 21.3 37 0.0015 13.6 5.8 112 128-251 79-204 (288) 139 3erv_A Putative C39-like pepti 21.1 29 0.0012 14.3 1.3 45 239-306 177-221 (236) 140 3gow_A PAAG, probable enoyl-CO 21.0 37 0.0016 13.6 3.4 25 129-153 30-54 (254) 141 1isp_A Lipase; alpha/beta hydr 20.9 37 0.0015 13.6 1.7 19 131-149 55-73 (181) 142 2ej5_A Enoyl-COA hydratase sub 20.2 39 0.0016 13.5 3.4 47 128-174 32-95 (257) No 1 >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Probab=100.00 E-value=0 Score=721.63 Aligned_cols=346 Identities=36% Similarity=0.703 Sum_probs=336.9 Q ss_pred CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCCCC Q ss_conf 33552249988998641999899999999985348438988995358997445011232699778013813353731000 Q gi|254781065|r 2 QLRHKTLTSAQDLYNANLIKKEQIDEIKEISNHYSIALTPVIANLINPHNPNDPIARQFIPQKEELNILPEEREDPIGDN 81 (352) Q Consensus 2 Qlr~~~i~s~~~L~~~l~Ls~e~~~~~~~~~~~fp~~vtpyyl~LId~~dp~DPi~rQvlP~~~El~~~~~~~~DPl~E~ 81 (352) |+++ +|+++++|.++++|++++.++++.+.+.|||+|||||++||||+||+|||+||++|+.+|+...+++..||++|. T Consensus 23 ql~~-~i~~~~~L~~~l~l~~~~~~~~~~~~~~~p~~vt~yy~~li~~~~p~dPi~rq~~P~~~e~~~~~~~~~Dp~~e~ 101 (416) T 2a5h_A 23 QVRN-RIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHED 101 (416) T ss_dssp HHHT-CBCSHHHHHTTSCCCHHHHHHHHTCTTSCCCCBCHHHHTTSCTTCTTCHHHHHHSCCGGGGCCCTTCBSSTTCTT T ss_pred HHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC T ss_conf 9999-788999999882989999999999985588748999998638999998788662899899678844445873212 Q ss_pred CCCCCCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH Q ss_conf 00768871452075379997274300000112233012555567898999999999972997479997269813249899 Q gi|254781065|r 82 NHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR 161 (352) Q Consensus 82 ~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~ 161 (352) .++|+|||+|||++||||.+|++|++|||||||+++++... ..++.++|+++++||++|++|+||+|||||||+++|++ T Consensus 102 ~~~~~~gl~hkY~~rvll~vT~~Cn~~CrYC~R~~~~~~~~-~~l~~~ei~~~i~yi~~~~~I~~V~lTGGePL~r~d~~ 180 (416) T 2a5h_A 102 TDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSD-DSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDET 180 (416) T ss_dssp TSCSBTTEECCSSSEEEEEEESCCSSCCTTCTTTTTTTSSS-SBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHH T ss_pred CCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH T ss_conf 24888884001587589984575477287989877568643-43468999999999984898269999789734378899 Q ss_pred HHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH Q ss_conf 99999998619981289874343563434339999999862599389993369958869999999999998798982327 Q gi|254781065|r 162 LQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS 241 (352) Q Consensus 162 L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs 241 (352) |.++++.|++|+||++||||||.|+++|+|++++|.+++.++ +++++++|+|||+|+++++.+|+++++++|++|.||+ T Consensus 181 L~~li~~l~~i~~i~~iri~T~~~~~~p~r~~~~L~~~g~~~-~nisldth~~h~~el~~~v~~~i~~l~~~Gi~vk~n~ 259 (416) T 2a5h_A 181 LEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY-HPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQS 259 (416) T ss_dssp HHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG-CSEEEEECCCSGGGCCHHHHHHHHHHHHTTCCEEEEE T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEC T ss_conf 999999998479986478880675447277799999877427-6389997427710055999999999997699487304 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE Q ss_conf 98623457889999999999986982423011345765210118699999999999982888654106631788888235 Q gi|254781065|r 242 VLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKVK 321 (352) Q Consensus 242 VLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~ 321 (352) |||||||||+++|.+|+++|+++||.|||+|++|++.|++||+||+++|++|++++++++||+++|+||+|+|||+||+| T Consensus 260 VllkGvNDd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g~~~f~v~~~~~~eI~~~l~~~l~G~~~p~~v~d~p~g~gK~~ 339 (416) T 2a5h_A 260 VLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTP 339 (416) T ss_dssp ECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEETTTTEEEE T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC T ss_conf 05677438889999999999867976999983478874321567799999999999864888664157763589987635 Q ss_pred ECCHHHEEECCCEEEEECCCCCEEECCCC Q ss_conf 55102123139879998169988718988 Q gi|254781065|r 322 IDTHNIKKVGNGSYCITDHHNIVHDYPPK 350 (352) Q Consensus 322 i~~~~~~~~~~~~~~l~~~~g~~~~yp~~ 350 (352) +.|+|+...+.+.+.+++++|++..|++| T Consensus 340 l~p~~~~~~~~~~~~~~~~~G~ig~y~~p 368 (416) T 2a5h_A 340 VMPNYVISQSHDKVILRNFEGVITTYSEP 368 (416) T ss_dssp CCCCCEEEEETTEEEEECTTCCEEEEECC T ss_pred CCCCCCCCCCCCEEEEECCCCCEEEECCC T ss_conf 77632015788679997799858985578 No 2 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Probab=99.45 E-value=2.3e-11 Score=99.82 Aligned_cols=189 Identities=19% Similarity=0.326 Sum_probs=130.1 Q ss_pred EEEEECCCCCCHHHCCCCCCEECC-----CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 799972743000001122330125-----555678989999999999729974799972698132498999999999861 Q gi|254781065|r 97 ILLKLLHVCPVYCRFCFRREMVGS-----QKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 97 vLl~~t~~C~~~CryCfR~~~~~~-----~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +=+-+|++|+..|.||+.....++ .....++.++|.+.++-+.+. .+..|.+|||+||+-+| +.+++..++. T Consensus 16 lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~eei~~ii~~~~~~-gv~~i~ltGGEPllr~d--~~~~i~~~~~ 92 (340) T 1tv8_A 16 LRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAEL-GVKKIRITGGEPLMRRD--LDVLIAKLNQ 92 (340) T ss_dssp EEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHT-TCCEEEEESSCGGGSTT--HHHHHHHHTT T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCHHCCHH--HHHHHHHHHH T ss_conf 79971552178896889640067777767610348999999999999876-98099963886200700--6999987521 Q ss_pred CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C------CHHHHHHHHHHHHCCCEEEEC Q ss_conf 99812898743435634343399999998625993899933699588-----6------999999999999879898232 Q gi|254781065|r 172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F------SEEAIAAISRLANAGIILLSQ 240 (352) Q Consensus 172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l------t~~~~~A~~~L~~~Gv~v~nQ 240 (352) ...+..+-+.|-. .++++.++.|++.+.. .+.+-+...++ + -..+.++++.++++|+.+.-. T Consensus 93 ~~~~~~~~~Tng~------ll~~~~~~~L~~~gl~-~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~~~~~g~~v~in 165 (340) T 1tv8_A 93 IDGIEDIGLTTNG------LLLKKHGQKLYDAGLR-RINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVN 165 (340) T ss_dssp CTTCCEEEEEECS------TTHHHHHHHHHHHTCC-EEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCCCCEEECCCCC------CCCHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 0221024210786------5342138999984998-88504677658888776510565000037999999879987999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCHHHHHHHHHHH Q ss_conf 79862345788999999999998698242301134576521---0118699999999999 Q gi|254781065|r 241 SVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTS---HFRLTIEEGQKIVASL 297 (352) Q Consensus 241 sVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l 297 (352) +|+++++|++ .+.++.+-....++.-.+......-.+.. ...++.++.....+.. T Consensus 166 ~vv~~~~N~~--~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 223 (340) T 1tv8_A 166 VVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQH 223 (340) T ss_dssp EEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHH T ss_pred EEECCCCCHH--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 8974886256--689999999847981999999843676663312568899999999984 No 3 >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Probab=99.09 E-value=7.9e-09 Score=81.95 Aligned_cols=159 Identities=13% Similarity=0.242 Sum_probs=103.7 Q ss_pred CCCCCCHHHCCCCCCEECCCCCCCCCHHH-HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE Q ss_conf 27430000011223301255556789899-9999999972-997479997269813249899999999986199812898 Q gi|254781065|r 102 LHVCPVYCRFCFRREMVGSQKGTVLSSKD-TEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILR 179 (352) Q Consensus 102 t~~C~~~CryCfR~~~~~~~~~~~~~~~~-~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IR 179 (352) +..|+..|.||+-++..........+.++ ++++..+.+. ...+..|.+|||+|++- .+.+.++++.+++. .+ .+. T Consensus 26 ~~GCN~~C~~C~n~~~~~~~~~~~~~~~e~~~ei~~~~~~~~~~~~~v~~sGGEP~l~-~~~l~~l~~~~k~~-g~-~~~ 102 (245) T 3c8f_A 26 FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ-AEFVRDWFRACKKE-GI-HTC 102 (245) T ss_dssp ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG-HHHHHHHHHHHHTT-TC-CEE T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC-HHHHHHHHHHHHHH-CC-CEE T ss_conf 7874788989997134186799188999999999999997525787585355565346-99999999988864-38-479 Q ss_pred EECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C----CHHHHHHHHHHHHCCCEEEECHHHHHCCCCC Q ss_conf 743435634343399999998625993899933699588-----6----9999999999998798982327986234578 Q gi|254781065|r 180 FHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F----SEEAIAAISRLANAGIILLSQSVLLKGINDD 250 (352) Q Consensus 180 i~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l----t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~ 250 (352) +.|-..... .++.++.+...-. ++..-+..+++ + ...+.++++.+.++|+.+.-.+++++|+||+ T Consensus 103 l~TnG~~~~----~~~~~~~l~~~~d--~v~id~~~~~~~~~~~~~g~~~~~vl~~l~~l~~~g~~v~i~~~~i~g~~d~ 176 (245) T 3c8f_A 103 LDTNGFVRR----YDPVIDELLEVTD--LVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDD 176 (245) T ss_dssp EEECCCCCC----CCHHHHHHHHTCS--EEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTTTCC T ss_pred EECCCCCCC----CHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC T ss_conf 977886555----3456666523575--7998435467889998738650899999999997899899999998994899 Q ss_pred HHHHHHHHHHHHHCC-CEEE Q ss_conf 899999999999869-8242 Q gi|254781065|r 251 PEILANLMRTFVELR-IKPY 269 (352) Q Consensus 251 ~~~l~~L~~~L~~~g-V~PY 269 (352) .+.+.++.+-+..++ +.++ T Consensus 177 ~e~i~~i~~~i~~l~~~~~v 196 (245) T 3c8f_A 177 DDSAHRLGEFTRDMGNVEKI 196 (245) T ss_dssp HHHHHHHHHHHHHHCCEEEE T ss_pred HHHHHHHHHHHHHCCCCCEE T ss_conf 99999999999857997558 No 4 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=99.05 E-value=1.6e-07 Score=72.78 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=137.7 Q ss_pred EEEEEECCCCCCHHHCC-CCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999727430000011-22330125555678989999999999729974799972698132498999999999861998 Q gi|254781065|r 96 RILLKLLHVCPVYCRFC-FRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKH 174 (352) Q Consensus 96 rvLl~~t~~C~~~CryC-fR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~h 174 (352) ++.+..|+.|+..|.|| |++. .+......++.+++.+.+..+.+ ..+++|+++||+........+..++..+.+..- T Consensus 54 ~~~I~~Sn~C~~~C~fC~~~~~-~~~~~~~~ls~eeI~~~~~~~~~-~G~~~i~l~~g~~~~~~~~~~~~~i~~i~~~~~ 131 (348) T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRD-NKNLKRYRMTPEEIVERARLAVQ-FGAKTIVLQSGEDPYXMPDVISDIVKEIKKMGV 131 (348) T ss_dssp EEEEEEECCCSCCCTTCTTCTT-CCSSCCCBCCHHHHHHHHHHHHH-TTCSEEEEEESCCGGGTTHHHHHHHHHHHTTSC T ss_pred EEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCE T ss_conf 9988865888998914998836-99976615899999999999998-199289982588876648999999874033321 Q ss_pred CEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C----C-HHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 12898743435634343399999998625993899933699588-----6----9-999999999998798982327986 Q gi|254781065|r 175 VQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F----S-EEAIAAISRLANAGIILLSQSVLL 244 (352) Q Consensus 175 v~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l----t-~~~~~A~~~L~~~Gv~v~nQsVLL 244 (352) .-.+. ...++++.++.|++.+..- +..-....++ + + .+..++++.++++|+.+..- ++ T Consensus 132 ~i~~~---------~g~~~~e~l~~L~~aG~~~-~~~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~--~i 199 (348) T 3iix_A 132 AVTLS---------LGEWPREYYEKWKEAGADR-YLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG--SM 199 (348) T ss_dssp EEEEE---------CCCCCHHHHHHHHHHTCCE-EECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEEC--BE T ss_pred EEEEC---------CCCCHHHHHHHHHHHCCCE-EEECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEE--EE T ss_conf 23202---------4543089999999828967-985634434021220114777312467766776249727888--99 Q ss_pred HCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 234-5788999999999998698242301134576521---01186999999999999828886541 Q gi|254781065|r 245 KGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTS---HFRLTIEEGQKIVASLKEKISGLCQP 307 (352) Q Consensus 245 kgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l~~~lsG~~~P 307 (352) =|. +.+.+.+.+....|.++++.-..++...|.+|+. +-.++..+.++++.-+|=.++.-.++ T Consensus 200 ~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~~~~~~~~~l~~ia~~Rl~lp~~~i~ 266 (348) T 3iix_A 200 VGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIP 266 (348) T ss_dssp ESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCB T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE T ss_conf 9459999999999999997279988989866751999765689959999999999999968987736 No 5 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Probab=98.73 E-value=2.2e-07 Score=71.71 Aligned_cols=227 Identities=14% Similarity=0.158 Sum_probs=130.3 Q ss_pred EEEC-CCCCCHHHCCCCCC--EECCCCC-CCCC-HHHHHHHHH----HHHHC--------------CCEEEEEEEC-CCC Q ss_conf 9972-74300000112233--0125555-6789-899999999----99729--------------9747999726-981 Q gi|254781065|r 99 LKLL-HVCPVYCRFCFRRE--MVGSQKG-TVLS-SKDTEAALA----YIQEK--------------SQIWEVIFTG-GDP 154 (352) Q Consensus 99 l~~t-~~C~~~CryCfR~~--~~~~~~~-~~~~-~~~~~~~~~----Yi~~~--------------~eI~eVilSG-GDP 154 (352) +.++ ..|+..|.||+|-+ ..+.... ..-. ..-++.+++ .|..- -.++.|.+|| |+| T Consensus 74 ~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~~Ea~~~~hvais~~GEP 153 (342) T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342) T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCC T ss_conf 43041520258988899877777766544447989999999999999887642676302566665248767999578775 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C--------CH Q ss_conf 3249899999999986199812898743435634343399999998625993899933699588-----6--------99 Q gi|254781065|r 155 LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F--------SE 221 (352) Q Consensus 155 l~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l--------t~ 221 (352) ++.++ |.++++.+.+-. + .+.+-|.. ++|.+ +..........-.+.+-++.+++ + -+ T Consensus 154 ll~p~--l~eli~~~~~~g-i-~~~l~TNG--tl~~~----~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e 223 (342) T 2yx0_A 154 MLYPY--MGDLVEEFHKRG-F-TTFIVTNG--TIPER----LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWE 223 (342) T ss_dssp GGSTT--HHHHHHHHHHTT-C-EEEEEECS--CCHHH----HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH T ss_pred CCCHH--HHHHHHHHHHCC-C-EEEEECCC--CCHHH----HHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH T ss_conf 34555--999999998639-6-49996588--66117----999998747886799835789989999873766767799 Q ss_pred HHHHHHHHHHHCCCEEEECHHHHHCCC-CCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHH Q ss_conf 999999999987989823279862345-788999999999998--6982423011345765210118-699999999999 Q gi|254781065|r 222 EAIAAISRLANAGIILLSQSVLLKGIN-DDPEILANLMRTFVE--LRIKPYYLHHPDLAAGTSHFRL-TIEEGQKIVASL 297 (352) Q Consensus 222 ~~~~A~~~L~~~Gv~v~nQsVLLkgVN-D~~~~l~~L~~~L~~--~gV~PYYl~~~d~v~G~~hf~v-~~~~~~~i~~~l 297 (352) .+.++++.|++.|+.+.-.++|++|+| |+.+.+++|.++.-- .-+++ |+|...-......-.+ .-++-.+..++| T Consensus 224 rvl~~L~~L~~~g~~~vir~tlv~g~N~~ei~~~a~li~~~~pdfie~k~-y~~~G~s~~~L~~~~mP~~eEv~~fa~~l 302 (342) T 2yx0_A 224 RILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKA-YMFVGYSRNRLTINNMPSHQDIREFAEAL 302 (342) T ss_dssp HHHHHHHHHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEE-CC------CCCCGGGSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE-EEEECCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999996699889999996898766699999999865999899960-38705786546401399889999999999 Q ss_pred HHHCCCCCCCEEEEECCCCCCCEEECCHHHEEECCCEEEEECCCCCEEE Q ss_conf 9828886541066317888882355510212313987999816998871 Q gi|254781065|r 298 KEKISGLCQPFYILDLPGGYGKVKIDTHNIKKVGNGSYCITDHHNIVHD 346 (352) Q Consensus 298 ~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~~~~~~~~l~~~~g~~~~ 346 (352) -..++||.+-. +-+ .+-+.+ .++.+-.-..++.+|+.++ T Consensus 303 ~~~l~gy~i~~---e~~--~SrvvL-----L~~~~~~~k~~~~~g~~~~ 341 (342) T 2yx0_A 303 VKHLPGYHIED---EYE--PSRVVL-----IMRDDVDPQGTGVEGRFIK 341 (342) T ss_dssp HTTCTTEEEEE---EEG--GGTEEE-----EEETTSEEEEEGGGEEECC T ss_pred HHHCCCCEEEC---CCC--CCEEEE-----EEECCCCCCCCEECCEEEC T ss_conf 98635977640---568--743899-----9840326554420646735 No 6 >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Probab=98.55 E-value=3.2e-06 Score=63.55 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=131.2 Q ss_pred CEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-----HHHHHHHHHH Q ss_conf 53799972743000001122330125555678989999999999729974799972698132498-----9999999998 Q gi|254781065|r 95 DRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSH-----KRLQKVLKTL 169 (352) Q Consensus 95 ~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~-----~~L~~ll~~L 169 (352) -+|.+.++..|+..|.||.=..+-|.. ...+.+++-+-++++.+. .++|++|+|.|-..... ..+..++..+ T Consensus 4 ~~A~i~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Ii~Ei~~l~~~-G~kei~l~~~d~~~~~~~~~~~~~~~~L~~~~ 80 (304) T 2qgq_A 4 PYAYVKISDGCDRGCTFCSIPSFKGSL--RSRSIEDITREVEDLLKE-GKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304) T ss_dssp SEEEEESBCCC-------------CCC--CBCCHHHHHHHHHHHHHT-TCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH T ss_pred CEEEEEECCCCCCCCEECEEEEEECCE--EEECHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH T ss_conf 619989776989987755562014983--771999999999999986-99099998564665554244511489999987 Q ss_pred HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC-EEEEECCCCHHH--C--------CHHHHHHHHHHHHCCCEEE Q ss_conf 6199812898743435634343399999998625993-899933699588--6--------9999999999998798982 Q gi|254781065|r 170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP-VYIAIHANHPYE--F--------SEEAIAAISRLANAGIILL 238 (352) Q Consensus 170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~-~~iv~H~NHp~E--l--------t~~~~~A~~~L~~~Gv~v~ 238 (352) ..+....++|+.+ ..|..+++++++.+.+.++- .++..-+.|..+ | .++..+++.++++.+.-+. T Consensus 81 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~ 156 (304) T 2qgq_A 81 NSLNGEFWIRVMY----LHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAV 156 (304) T ss_dssp HTSSSSCEEEECC----CCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCE T ss_pred HCCCCCEEEEEEC----CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 2368835899403----584367788777676448464677406432787999875047645554458876766489955 Q ss_pred ECHHHHHC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC Q ss_conf 32798623-4578899999999999869824230113457652101186 Q gi|254781065|r 239 SQSVLLKG-INDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLT 286 (352) Q Consensus 239 nQsVLLkg-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~ 286 (352) -.+=++=| =.++.+++.++.+-+.+++.-=-.+|..-|-+||.-|..+ T Consensus 157 i~t~fIvGfPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~ 205 (304) T 2qgq_A 157 LRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLK 205 (304) T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC---------- T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCC T ss_conf 7635756789876899999999998569783300242566997666636 No 7 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Probab=98.46 E-value=8.8e-05 Score=53.35 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=124.1 Q ss_pred EEEEE-CCCCCCHHHCC-CCCCEECC-CCCCCCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-CHHHHHHHHHHHHC Q ss_conf 79997-27430000011-22330125-55567898999999999972997479997-26981324-98999999999861 Q gi|254781065|r 97 ILLKL-LHVCPVYCRFC-FRREMVGS-QKGTVLSSKDTEAALAYIQEKSQIWEVIF-TGGDPLIL-SHKRLQKVLKTLRY 171 (352) Q Consensus 97 vLl~~-t~~C~~~CryC-fR~~~~~~-~~~~~~~~~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-~~~~L~~ll~~L~~ 171 (352) .++.+ |+.|...|+|| |+++.-.+ ......+.+++.+.+..+.+. ..+++.+ +|++|..- .-+.+..++..+.+ T Consensus 67 ~iin~~Tn~C~~~C~FCafs~~~~~~~~~~~l~s~eeI~e~a~~~~~~-G~~~i~l~~g~~~~~~~~~~~~~~~i~~i~~ 145 (369) T 1r30_A 67 TLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA-GSTRFCMGAAWKNPHERDMPYLEQMVQGVKA 145 (369) T ss_dssp EEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT-TCSEEEEEECCSSCCTTTHHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 687755899998892299734189998754668879999999989875-9979999957888870279999999998520 Q ss_pred CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC---------CHHHHHHHHHHHHCCCEEEECHH Q ss_conf 998128987434356343433999999986259938999336995886---------99999999999987989823279 Q gi|254781065|r 172 IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF---------SEEAIAAISRLANAGIILLSQSV 242 (352) Q Consensus 172 i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El---------t~~~~~A~~~L~~~Gv~v~nQsV 242 (352) .. +.++ .-+..++.+.+..|++.+..- +..-+...+|. .++-.++++.++++|+.+..- T Consensus 146 ~~----~~i~-----~~~~~l~~e~l~~Lk~aG~~~-~~~~lEt~~~~~~~~~~~~~~~~rl~~l~~a~~~Gi~~~~g-- 213 (369) T 1r30_A 146 MG----LEAC-----MTLGTLSESQAQRLANAGLDY-YNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG-- 213 (369) T ss_dssp TT----SEEE-----EECSSCCHHHHHHHHHHCCCE-EECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECC-- T ss_pred CC----CEEE-----EECCCCCHHHHHHHHHHCCCE-ECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-- T ss_conf 47----5476-----512679899999998518788-83434245554213434587999999999999828973588-- Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 8623457889999999999986982----42301134576521---0118699999999999982888654 Q gi|254781065|r 243 LLKGINDDPEILANLMRTFVELRIK----PYYLHHPDLAAGTS---HFRLTIEEGQKIVASLKEKISGLCQ 306 (352) Q Consensus 243 LLkgVND~~~~l~~L~~~L~~~gV~----PYYl~~~d~v~G~~---hf~v~~~~~~~i~~~l~~~lsG~~~ 306 (352) +|=|..++.+.+.++...|.++++. |...|. |.+|+. +-.++..+.++++.-.|=.+|.-.+ T Consensus 214 ~i~G~gEt~ed~i~~l~~Lr~L~~~~~~v~~~~f~--P~~gT~l~~~~~~~~~e~lr~iAi~Rl~lP~~~i 282 (369) T 1r30_A 214 GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLV--KVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYV 282 (369) T ss_dssp EEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECC--CCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEE T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE T ss_conf 89788999999999999998668998665550046--6899976667899999999999999997788643 No 8 >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Probab=98.37 E-value=1.3e-06 Score=66.23 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=107.2 Q ss_pred EEEEEC-CCCCCHHHCCCCCCE--ECCCCC-----CCCC-HHHHHHHHH----HHHH---------------CCCEEEEE Q ss_conf 799972-743000001122330--125555-----6789-899999999----9972---------------99747999 Q gi|254781065|r 97 ILLKLL-HVCPVYCRFCFRREM--VGSQKG-----TVLS-SKDTEAALA----YIQE---------------KSQIWEVI 148 (352) Q Consensus 97 vLl~~t-~~C~~~CryCfR~~~--~~~~~~-----~~~~-~~~~~~~~~----Yi~~---------------~~eI~eVi 148 (352) +=+.++ ..|+..|.||+|.+. ++.... ..-. ..-.+.+++ .|.. --.++-+. T Consensus 53 ~~~tPs~~~CN~rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~~~~ia 132 (311) T 2z2u_A 53 IQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVA 132 (311) T ss_dssp EEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEE T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE T ss_conf 65335730020879477698878777773101344548999999999999999976532677540156666523763798 Q ss_pred EE-CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----CC-- Q ss_conf 72-69813249899999999986199812898743435634343399999998625993899933699588-----69-- Q gi|254781065|r 149 FT-GGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----FS-- 220 (352) Q Consensus 149 lS-GGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----lt-- 220 (352) +| ||+|++-++ |.++++.+.+.. + .+-+-|.. .+|+ .|++.+. -.+.+-++.+++ ++ T Consensus 133 is~~GEP~l~p~--l~eli~~~~~~g-i-~~~l~TNG--~~~d--------~l~~l~~-~~l~vSlDa~~~e~~~~i~r~ 197 (311) T 2z2u_A 133 ISLSGEPTLYPY--LDELIKIFHKNG-F-TTFVVSNG--ILTD--------VIEKIEP-TQLYISLDAYDLDSYRRICGG 197 (311) T ss_dssp ECSSSCGGGSTT--HHHHHHHHHHTT-C-EEEEEECS--CCHH--------HHHHCCC-SEEEEECCCSSTTTC----CC T ss_pred ECCCCCCCHHHH--HHHHHHHHHHCC-C-EEEEEECC--CCHH--------HHHHHCC-CEEEEEECCCCHHHHHHHHCC T ss_conf 626887304789--999999998759-7-27754154--3447--------8987055-158863047999999998675 Q ss_pred -----HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCC-HHHHHH Q ss_conf -----9999999999987989823279862345788999999999998698--24230113457652101186-999999 Q gi|254781065|r 221 -----EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRI--KPYYLHHPDLAAGTSHFRLT-IEEGQK 292 (352) Q Consensus 221 -----~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV--~PYYl~~~d~v~G~~hf~v~-~~~~~~ 292 (352) +.+.++++.|++.|..+.+ .++++|+||+.+.+++|.+.+---.| +| |+|...-...-....+| .++-++ T Consensus 198 ~~~~~e~vl~~l~~l~~~~~~vir-~tlv~g~Nddi~~~a~l~~~~~~~fIEvk~-~~~~G~s~~~l~~~~~p~~eEv~e 275 (311) T 2z2u_A 198 KKEYWESILNTLDILKEKKRTCIR-TTLIRGYNDDILKFVELYERADVHFIELKS-YMHVGYSQKRLKKEDMLQHDEILK 275 (311) T ss_dssp CHHHHHHHHHHHHHHTTSSSEEEE-EEECTTTTCCGGGTHHHHHHHTCSEEEEEE-CC------------CCCCHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCEEEE-EEEECCCCCCHHHHHHHHHHCCCCEEEEEC-EEECCCCCCCCCCCCCCCHHHHHH T ss_conf 623799999999999866987999-984367764899999999753998899964-085146645254025999999999 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99999982888654 Q gi|254781065|r 293 IVASLKEKISGLCQ 306 (352) Q Consensus 293 i~~~l~~~lsG~~~ 306 (352) +.+.+. ..+||.+ T Consensus 276 ~~~~l~-~~~~y~i 288 (311) T 2z2u_A 276 LAKMLD-ENSSYKL 288 (311) T ss_dssp HHHHHH-TSSSEEE T ss_pred HHHHHH-HCCCCEE T ss_conf 999986-5249646 No 9 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Probab=98.22 E-value=0.00019 Score=50.97 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=130.7 Q ss_pred EEEEEECCCCCCHHHCCCCCCEECCCCCCCCC--HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 37999727430000011223301255556789--8999999999972---997479997269813249899999999986 Q gi|254781065|r 96 RILLKLLHVCPVYCRFCFRREMVGSQKGTVLS--SKDTEAALAYIQE---KSQIWEVIFTGGDPLILSHKRLQKVLKTLR 170 (352) Q Consensus 96 rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~--~~~~~~~~~Yi~~---~~eI~eVilSGGDPl~l~~~~L~~ll~~L~ 170 (352) ..|.+=-..|...|.||--...++..... .. -+.+.+-++..+. ...|..+-+-||-|-.|+.+.|..+++.|+ T Consensus 53 lsLYiHIPFC~~~C~yC~~~~~~~~~~~~-~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~~~~l~~l~~~l~ 131 (457) T 1olt_A 53 LSLYVHIPFCHKLCYFCGCNKIVTRQQHK-ADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLR 131 (457) T ss_dssp EEEEEEECEESSCCTTCCSSCEECSCTHH-HHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCCEECCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 49999708989889999982455888661-99999999999999655638997459998287504489999999999999 Q ss_pred CCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC-CEEEEECCCCHHHC--------CHHHHHHHHHHHHCCCEEEECH Q ss_conf 19981289874343563434339999999862599-38999336995886--------9999999999998798982327 Q gi|254781065|r 171 YIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK-PVYIAIHANHPYEF--------SEEAIAAISRLANAGIILLSQS 241 (352) Q Consensus 171 ~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~-~~~iv~H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQs 241 (352) +.-.+ -....-..-..|..+|.+.++.+++.|. .+.+-++-=.+..+ ..++.+++..++++|+.-.|= T Consensus 132 ~~f~~--~~~~e~tiE~~P~~~~~~~l~~l~~~G~nRiSlGvQsfd~~vlk~i~R~~~~e~~~~~i~~~r~~g~~~i~~- 208 (457) T 1olt_A 132 ENFQF--NADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNI- 208 (457) T ss_dssp HHSCE--EEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEE- T ss_pred HHCCC--CCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEC- T ss_conf 86477--877079998259987176799997379987996078697798856214673888999999999840543723- Q ss_pred HHHHCC-CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------CCHHHHHHHHHHHHHHCCC Q ss_conf 986234-5788999999999998698242301134576521011--------8699999999999982888 Q gi|254781065|r 242 VLLKGI-NDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFR--------LTIEEGQKIVASLKEKISG 303 (352) Q Consensus 242 VLLkgV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~--------v~~~~~~~i~~~l~~~lsG 303 (352) -|+=|. +.+.+.+.+-.+.+.+++.-=--+|.....+++.... .+.++..++++.....+.. T Consensus 209 DLI~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~a~~~L~~ 279 (457) T 1olt_A 209 DLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ 279 (457) T ss_dssp EEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 31577998337788889988884089811343110078427766322223542027999999999999997 No 10 >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Probab=97.95 E-value=0.00066 Score=47.15 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=78.9 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH-----C-- Q ss_conf 997269813249899999999986199812898743435634343399999998625993899933699588-----6-- Q gi|254781065|r 147 VIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE-----F-- 219 (352) Q Consensus 147 VilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E-----l-- 219 (352) |-+|||+|++-++ .|.+++..+++. .+. +.+-|.... .+ +..+.+......+ ..-+.++++ + T Consensus 7 Vt~sGGEP~l~~~-~l~ei~~~~k~~-g~~-~~l~TNG~l-~~-----e~~~~~~~~~d~~--~~sl~~~~~e~~~~i~g 75 (182) T 3can_A 7 VTFCGGEPLLHPE-FLIDILKRCGQQ-GIH-RAVDTTLLA-RK-----ETVDEVMRNCELL--LIDLKSMDSTVHQTFCD 75 (182) T ss_dssp EEECSSTGGGSHH-HHHHHHHHHHHT-TCC-EEEECTTCC-CH-----HHHHHHHHTCSEE--EEECCCSCHHHHHHHHS T ss_pred EEEEECCHHCCHH-HHHHHHHHHHHC-CCC-EEEECCCCC-CH-----HHHHHHHHHHHHE--ECCCCCCCHHHHHHHHC T ss_conf 8998303509887-999999999887-991-999817752-48-----9999854322325--41423368999998849 Q ss_pred --CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCC Q ss_conf --99999999999987989823279862345788999999999998698 Q gi|254781065|r 220 --SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRI 266 (352) Q Consensus 220 --t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV 266 (352) ...+.+.++.+.++|..+.-..++++|+||+.+.+.+|.+-+.+++. T Consensus 76 ~~~~~v~~~i~~l~~~~~~v~~~~~vi~~~~~~~~~i~~l~~~i~~~~~ 124 (182) T 3can_A 76 VPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR 124 (182) T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC T ss_conf 9889999889999971985057898878865999999999999985699 No 11 >1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2 Probab=90.02 E-value=0.21 Score=29.51 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=59.1 Q ss_pred CCCEEEEEC---CCCH--HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC----------CCHHHHHHHHHHHHHCCCEE Q ss_conf 993899933---6995--88699999999999987989823279862345----------78899999999999869824 Q gi|254781065|r 204 GKPVYIAIH---ANHP--YEFSEEAIAAISRLANAGIILLSQSVLLKGIN----------DDPEILANLMRTFVELRIKP 268 (352) Q Consensus 204 ~~~~~iv~H---~NHp--~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN----------D~~~~l~~L~~~L~~~gV~P 268 (352) +.++++|+| |.-| +|+++|. .+.|++.|+.|+.+|=+|.|+- --+|.+++-.+.||..|++ T Consensus 66 g~~lVvVth~~GF~~pg~~e~~~e~---~~~L~~~G~~V~t~tH~lsG~eR~is~kfgG~~p~EiiA~tLR~lfgqG~K- 141 (201) T 1vp8_A 66 GLEVVVVTYHTGFVREGENTMPPEV---EEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLK- 141 (201) T ss_dssp TCEEEEEECCTTSSSTTCCSSCHHH---HHHHHHTTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHH- T ss_pred CCCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE- T ss_conf 9829999563687899957489999---999997798899951433430466422147979899999999998478747- Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC Q ss_conf 230113457652101186999999999999828886541066317888882 Q gi|254781065|r 269 YYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLPGGYGK 319 (352) Q Consensus 269 YYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GK 319 (352) +.--..+|.-=.|.+|+ -. |+-+ ||.|| T Consensus 142 ------------------VavEi~lMAaDaGlIp~--ee--VIAi-GGT~~ 169 (201) T 1vp8_A 142 ------------------VCVEITIMAADSGAIPI--EE--VVAV-GGRSR 169 (201) T ss_dssp ------------------HHHHHHHHHHHTTSSCS--SC--EEEE-ECSSS T ss_pred ------------------EEEEEEEEEECCCCCCC--CC--EEEE-CCCCC T ss_conf ------------------99998654305799870--00--8997-55667 No 12 >1v93_A 5,10-methylenetetrahydrofolate reductase; flavoprotein, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 1.90A {Thermus thermophilus HB8} SCOP: c.1.23.1 Probab=79.22 E-value=3.6 Score=20.79 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=48.4 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------------CHHHHHHHHHHHHCCCCCEEEEEEC-CEEEEEHHHCC Q ss_conf 9899999999997299747999726981324------------9899999999986199812898743-43563434339 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLIL------------SHKRLQKVLKTLRYIKHVQILRFHS-RVPIVDPQRIN 193 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l------------~~~~L~~ll~~L~~i~hv~~IRi~T-R~pv~~P~Rit 193 (352) ++.+++..+....+. .|++|+.=+|||-.- ....|-..+..... ..+.+|. -.|-..|+--+ T Consensus 84 n~~~l~~~l~~~~~~-GI~niLal~GD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~----~~~~igva~~Peghp~~~~ 158 (296) T 1v93_A 84 SRKEVAEVLHRFVES-GVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYG----DRVSVGGAAYPEGHPESES 158 (296) T ss_dssp CHHHHHHHHHHHHHT-TCCEEEECCCCCCTTCSSCCCCTTSCSSHHHHHHHHHHHHG----GGSEEEEEECTTCCTTCSS T ss_pred CHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCH T ss_conf 788899999999981-98867661488766576778874212679999999997256----5545555568877864133 Q ss_pred -HHHHHHHH---HCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE Q ss_conf -99999986---25993899933699588699999999999987989 Q gi|254781065|r 194 -PELIQCLK---EAGKPVYIAIHANHPYEFSEEAIAAISRLANAGII 236 (352) Q Consensus 194 -~~L~~~l~---~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~ 236 (352) +..++.|+ +.+ --+++|++-==.| ...+-+.+++++|+. T Consensus 159 ~~~di~~l~~K~~aG-A~f~iTQ~~fd~~---~~~~~~~~~r~~gi~ 201 (296) T 1v93_A 159 LEADLRHFKAKVEAG-LDFAITQLFFNNA---HYFGFLERARRAGIG 201 (296) T ss_dssp HHHHHHHHHHHHHTT-CSEEEEEECSSHH---HHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEEECHH---HHHHHHHHHHHCCCC T ss_conf 999999999999818-8706621166289---999999999975999 No 13 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=71.51 E-value=5.5 Score=19.43 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=69.0 Q ss_pred EEEEEECCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHHH Q ss_conf 7999726981324-989999999998619981289874343563434339999999862599389993369958869999 Q gi|254781065|r 145 WEVIFTGGDPLIL-SHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEA 223 (352) Q Consensus 145 ~eVilSGGDPl~l-~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~ 223 (352) ..|++-.|+|-.. +..+..-+.+.|.+-+.++.+.+..= -+.++......-++|+++...-.+.+. | +.-+ T Consensus 146 ~~i~~i~G~~~~~~~~~R~~G~~~al~~~~~~~i~~~~~~--~~~~~~a~~~~~~lL~~~pdi~ai~~~-n-----D~~A 217 (350) T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYG--EWNRERAYRQAQQLLKRYPKTQLVWSA-N-----DEMA 217 (350) T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCTTEEEEEES-S-----HHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEEC-C-----HHHH T ss_conf 4799995886772788988899999997799740255543--256899999999998359998099987-8-----5999 Q ss_pred HHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999999987989823279862345788999999999 Q gi|254781065|r 224 IAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 224 ~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) .-|++.++++|..+... +.+-|++++++++..+-.. T Consensus 218 ~Ga~~Al~~~G~~~~~d-i~vvG~D~~~~~l~~i~~G 253 (350) T 3h75_A 218 LGAMQAARELGRKPGTD-LLFSGVNSSPEALQALIDG 253 (350) T ss_dssp HHHHHHHHHTTCCBTTT-BEEEEESCCHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCCC-EEEEEECCCHHHHHHHHCC T ss_conf 99999999759999999-5999989859999998679 No 14 >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein structure initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.58.18.11 d.58.18.11 Probab=68.17 E-value=2.1 Score=22.47 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=54.6 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHH Q ss_conf 6999999999999879898232798623457889999999999986982423011345765210118---6999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVA 295 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~ 295 (352) +.....++...+.+.|..+--.+|...|..|.+-.+.++++.|...||.=-|+++... .+...|-+ ..+++.++.+ T Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~vvg~~m~~~~G~~a~i~~~L~~~~INI~~i~~~~s-~~~~~~vi~~~D~~~a~~~L~ 129 (144) T 2f06_A 51 IVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN-NNVANVVIRPSNMDKCIEVLK 129 (144) T ss_dssp EESCHHHHHHHHHHTTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC-CCCEEEEEECCCHHHHHHHHH T ss_conf 3221123344444047625589877247667850899999999868998798752337-783699997365999999999 Q ss_pred H Q ss_conf 9 Q gi|254781065|r 296 S 296 (352) Q Consensus 296 ~ 296 (352) + T Consensus 130 ~ 130 (144) T 2f06_A 130 E 130 (144) T ss_dssp H T ss_pred H T ss_conf 8 No 15 >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} Probab=67.61 E-value=6.6 Score=18.88 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH Q ss_conf 899999999997299747999726981324989999999 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVL 166 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll 166 (352) -+++.++++.+.++++++=|||||..+---+-..|.++. T Consensus 34 ~~~l~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~ 72 (266) T 3fdu_A 34 YLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFM 72 (266) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHH T ss_conf 999999999997589946999978984251573166654 No 16 >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Probab=65.22 E-value=4.1 Score=20.32 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -.++..+++.+..+++|+=|||+|..+ T Consensus 33 ~~el~~~l~~~~~d~~v~~vVl~g~g~ 59 (263) T 3lke_A 33 GTSLLEAIRAGNNETSIHSIILQSKHR 59 (263) T ss_dssp HHHHHHHHHHHHHCSSCCEEEEEESCT T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 999999999985099957999963898 No 17 >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Probab=65.16 E-value=3.1 Score=21.24 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 8999999999972997479997269813 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL 155 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl 155 (352) ..++.++++.+.++++++=|||||+++- T Consensus 33 ~~~l~~~l~~~~~d~~v~~vVltg~g~~ 60 (275) T 1dci_A 33 WRELVECFQKISKDSDCRAVVVSGAGKM 60 (275) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEESTTC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999999975899679999678987 No 18 >1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1 Probab=63.60 E-value=7.8 Score=18.36 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=27.7 Q ss_pred HHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 999999998798982327986234578899999999999869824230113457652101186999999999 Q gi|254781065|r 224 IAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVA 295 (352) Q Consensus 224 ~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~ 295 (352) .+++....++| ++|.+-.-|-+...-..+.......|+..+ ++ +|.+|.+.+++-.. T Consensus 266 ~~~~~~~L~~g-----~sVViD~Tn~~~~~R~~~i~lA~~~g~~v~-~v---------~~~~~~e~~~~rn~ 322 (383) T 1yj5_A 266 VSSCQAALRQG-----KRVVIDNTNPDVPSRARYIQCAKDAGVPCR-CF---------NFCATIEQARHNNR 322 (383) T ss_dssp HHHHHHHHHTT-----CCEEEESCCCSHHHHHHHHHHHHHHTCCEE-EE---------EECCCHHHHHHHHH T ss_pred HHHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHCCCEEE-EE---------EECCCHHHHHHHHH T ss_conf 99999999779-----909997999999999999999998698499-99---------97799999999999 No 19 >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Probab=63.39 E-value=7.9 Score=18.34 Aligned_cols=97 Identities=11% Similarity=0.235 Sum_probs=56.2 Q ss_pred HHHHHHHHHCCCEEEEEEEC-----------------CCCCCC--CH--HHHHHHHHHHHCCCCCEEEEEE-----CCEE Q ss_conf 99999997299747999726-----------------981324--98--9999999998619981289874-----3435 Q gi|254781065|r 132 EAALAYIQEKSQIWEVIFTG-----------------GDPLIL--SH--KRLQKVLKTLRYIKHVQILRFH-----SRVP 185 (352) Q Consensus 132 ~~~~~Yi~~~~eI~eVilSG-----------------GDPl~l--~~--~~L~~ll~~L~~i~hv~~IRi~-----TR~p 185 (352) .+..+|+++||.|..|.--| |--++. .. +....++ +.++.++++ ++.+ T Consensus 272 ~~lA~~L~~hp~V~~V~yPgl~s~~~~~l~~~~~~~~g~~~sf~l~~~~~~a~~f~------~~l~l~~~a~SlGg~~SL 345 (404) T 1e5e_A 272 MKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLL------DNLKLITLAVSLGGCESL 345 (404) T ss_dssp HHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHH------HTCSSSEESSCCCSSSCE T ss_pred HHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH------HHCCCCEEEECCCCCCCE T ss_conf 99999986089951742677778525999997452588555788629899999999------828836153247876505 Q ss_pred EEEHHHC-----CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCC Q ss_conf 6343433-----999999986259938999336995886999999999999879 Q gi|254781065|r 186 IVDPQRI-----NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAG 234 (352) Q Consensus 186 v~~P~Ri-----t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~G 234 (352) +..|... +++-.+...-...-+-+.+-+.++..|-.+..+|++++.++- T Consensus 346 i~~pas~th~~~~~e~~~~~Gi~~~liRlSvGlEd~~DLi~Dl~~AL~a~~~~~ 399 (404) T 1e5e_A 346 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLRSH 399 (404) T ss_dssp EECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHCC- T ss_pred EECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC T ss_conf 678500252229999999669893979999620999999999999999998520 No 20 >2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A Probab=63.01 E-value=4.5 Score=20.08 Aligned_cols=43 Identities=23% Similarity=0.108 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999998798982327------------9862345788999999999998 Q gi|254781065|r 221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE 263 (352) Q Consensus 221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~ 263 (352) -|+.+||.=|+.+|.+-+.|. |=-..=.=+.+.|..|+++|-. T Consensus 21 iEA~eAC~WLRaaGFpqYAqlyEd~~FPIdi~~Vk~Dh~fLd~D~l~sL~RRL~t 75 (91) T 2dky_A 21 IEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNT 75 (91) T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 9899999999982884899986504688251442357764047789999999999 No 21 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Probab=62.85 E-value=8.1 Score=18.27 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----CHHHHHHHH-HHHHCCCCCEEEEE Q ss_conf 899999999997299747999726981324-----989999999-99861998128987 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLIL-----SHKRLQKVL-KTLRYIKHVQILRF 180 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l-----~~~~L~~ll-~~L~~i~hv~~IRi 180 (352) .+..+...++++++|+|..+..||+.-+++ +.+.+..++ +.|..+|.|..++- T Consensus 94 ~~~~~~v~~~l~~~peV~~~~~tG~~D~i~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t 152 (171) T 2ia0_A 94 ERYISYISSTLSALPGVLFVAKSGEDKIIALVGKNNKDELVKFIEENITSIPNLKHIQI 152 (171) T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTEEEEEEEESSTTHHHHHHHHHTTTSTTEEEEEE T ss_pred CCCCHHHHHHHHHHHEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 11002367788652308788864888699999979999999999997325989647999 No 22 >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Probab=60.77 E-value=5.2 Score=19.63 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) ..++.++++.++++++|+=|||+|+.. T Consensus 55 ~~eL~~al~~~~~d~~vrvvvl~g~g~ 81 (286) T 3myb_A 55 LAALGEAFGTLAEDESVRAVVLAASGK 81 (286) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEECSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999997489956999956999 No 23 >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Probab=57.93 E-value=9.7 Score=17.70 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.1 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 57889999999999 Q gi|254781065|r 248 NDDPEILANLMRTF 261 (352) Q Consensus 248 ND~~~~l~~L~~~L 261 (352) +.+.+...+++.+| T Consensus 305 ~~~~~~a~~f~~~l 318 (386) T 1cs1_A 305 DGDEQTLRRFLGGL 318 (386) T ss_dssp SSCHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHC T ss_conf 69899999999708 No 24 >2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A Probab=57.44 E-value=3.5 Score=20.83 Aligned_cols=43 Identities=23% Similarity=0.113 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHCCCEEEECH------------HHHHCCCCCHHHHHHHHHHHHH Q ss_conf 999999999998798982327------------9862345788999999999998 Q gi|254781065|r 221 EEAIAAISRLANAGIILLSQS------------VLLKGINDDPEILANLMRTFVE 263 (352) Q Consensus 221 ~~~~~A~~~L~~~Gv~v~nQs------------VLLkgVND~~~~l~~L~~~L~~ 263 (352) -|+.+||+=|+.+|.+-+.|. |=-..-.=|.+.+..|+++|-. T Consensus 19 iEA~eAC~WLRaaGFpqYAqlyEd~~FPIdI~~VkkDh~fLd~Dsl~sL~RRL~t 73 (81) T 2h80_A 19 IEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNT 73 (81) T ss_dssp HHHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 9899999999983884899986603788403877137663167789999999999 No 25 >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} Probab=57.14 E-value=2.2 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) -.++.++++.+.++++++=|||||. T Consensus 46 ~~el~~al~~~~~d~~v~~vVitg~ 70 (279) T 3g64_A 46 YADLRDLLAELSRRRAVRALVLAGE 70 (279) T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999999960999579999479 No 26 >1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A Probab=56.15 E-value=10 Score=17.50 Aligned_cols=185 Identities=17% Similarity=0.142 Sum_probs=113.9 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC--------CC---CCEEEEEECCEEEEEHHHCC Q ss_conf 78989999999999729974799972698132498999999999861--------99---81289874343563434339 Q gi|254781065|r 125 VLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY--------IK---HVQILRFHSRVPIVDPQRIN 193 (352) Q Consensus 125 ~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~--------i~---hv~~IRi~TR~pv~~P~Rit 193 (352) .++.++.++.++-+.+...|. ++-.|++-..++...++.+...+.+ -| -+..-.+-+|.+-.+|.++- T Consensus 28 ~l~~~~~~~~L~~l~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~H~~~P~~~G~~~~eL~~~l~~~~~~~~~ 106 (258) T 1lva_A 28 SLSLEETRKLLQSMAAAGQVT-LLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVY 106 (258) T ss_dssp TCCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEE-EEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHH T ss_conf 989999999999988579779-9955894599879999999999999999999968776798999999762312789999 Q ss_pred HHHHHHHHHCCCCEE----EEECCCCHHHCCHHHHHHHH----HHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC Q ss_conf 999999862599389----99336995886999999999----9998798982327986234578899999999999869 Q gi|254781065|r 194 PELIQCLKEAGKPVY----IAIHANHPYEFSEEAIAAIS----RLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR 265 (352) Q Consensus 194 ~~L~~~l~~~~~~~~----iv~H~NHp~Elt~~~~~A~~----~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g 265 (352) +.+++.|.+.+. +. ++...+|-..++++..+... .+.++|...-.=.=+.+..|=+...+.++.+.|.+.| T Consensus 107 ~~lL~~L~~~g~-l~~~~~~v~l~~~~~~l~~~~~~~~~~i~~~l~~~g~~pp~~~el~~~l~~~~~~~~~~l~~l~~~g 185 (258) T 1lva_A 107 QALLEEWSREGR-LQLAANTVALAGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREG 185 (258) T ss_dssp HHHHHHHHHTTS-EEEETTEEEETTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCC-EEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 999999986898-7986999975787777899999999999999997699999889999894989899999999999689 Q ss_pred CEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCE Q ss_conf 82423011345765210118-69999999999998288865410663178888823 Q gi|254781065|r 266 IKPYYLHHPDLAAGTSHFRL-TIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKV 320 (352) Q Consensus 266 V~PYYl~~~d~v~G~~hf~v-~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv 320 (352) ..= .+.+.-+|.. .++++.++++.+.. -.++.+ .-..|+-|-+=|. T Consensus 186 ~lv-------~i~~~~~~~~~~~~~~~~~l~~l~~-~~~itv-~~~rd~~g~SRK~ 232 (258) T 1lva_A 186 VLV-------KINDEFYWHRQALGEAREVIKNLAS-TGPFGL-AEARDALGSSRKY 232 (258) T ss_dssp SEE-------ESSSSBEEEHHHHHHHHHHHHHHHT-TSCBCH-HHHHHHHTCCHHH T ss_pred CEE-------EECCCEEECHHHHHHHHHHHHHHHH-CCCCCH-HHHHHHHCCCHHH T ss_conf 769-------8279889979999999999997887-498749-9999887987999 No 27 >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A Probab=55.47 E-value=11 Score=17.42 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 89999999999729974799972698132498999999999 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKT 168 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~ 168 (352) -+++.++++.+.++++++=|||||..+.--+-..|+++... T Consensus 32 ~~el~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~ 72 (243) T 2q35_A 32 VEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRK 72 (243) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCC T ss_conf 99999999999769896799997889844798844544202 No 28 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=54.35 E-value=11 Score=17.30 Aligned_cols=130 Identities=17% Similarity=0.237 Sum_probs=68.4 Q ss_pred HHHHHHHHHHHHC--CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHH---HC Q ss_conf 9999999999729--974799972698132498999999999861998128987434356343433999999986---25 Q gi|254781065|r 129 KDTEAALAYIQEK--SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLK---EA 203 (352) Q Consensus 129 ~~~~~~~~Yi~~~--~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~---~~ 203 (352) ..+++++..+++. .+=-|||+|.| ++ ..+|.+--.+| |-.|.+.. -++++.|. ++ T Consensus 46 ~~~edav~~~~~~~~~~~~DviISRG-----~t---a~~Ir~~~~iP-VVeI~vs~-----------~Dil~aL~~a~~~ 105 (225) T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAG-----SN---GAYLKSRLSVP-VILIKPSG-----------YDVLQFLAKAGKL 105 (225) T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEH-----HH---HHHHHTTCSSC-EEEECCCH-----------HHHHHHHHHTTCT T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECC-----HH---HHHHHHHCCCC-EEEEECCH-----------HHHHHHHHHHHHH T ss_conf 74789999999998649986999685-----68---99999858998-89970787-----------6899999999975 Q ss_pred CCCEEEEECCCCHHHC------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC Q ss_conf 9938999336995886------------------9999999999998798982327986234578899999999999869 Q gi|254781065|r 204 GKPVYIAIHANHPYEF------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR 265 (352) Q Consensus 204 ~~~~~iv~H~NHp~El------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g 265 (352) +.++.++.+-|-..++ ..++.++++.+++.|+.+.-=..+ ..++ --++| T Consensus 106 ~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG~~~----------~~~~---A~~~G 172 (225) T 2pju_A 106 TSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL----------ITDL---AEEAG 172 (225) T ss_dssp TSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHH----------HHHH---HHHTT T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHH----------HHHH---HHHCC T ss_conf 8988999376403699999999699449999668899999999999869979998858----------9999---99849 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 82423011345765210118699999999999 Q gi|254781065|r 266 IKPYYLHHPDLAAGTSHFRLTIEEGQKIVASL 297 (352) Q Consensus 266 V~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l 297 (352) +....++- | .--+--+++|+++.+.. T Consensus 173 l~~vli~S-----g-eSI~~Ai~~Al~~ar~~ 198 (225) T 2pju_A 173 MTGIFIYS-----A-ATVRQAFSDALDMTRMS 198 (225) T ss_dssp SEEEESSC-----H-HHHHHHHHHHHHHHHHC T ss_pred CCEEEECC-----H-HHHHHHHHHHHHHHHHH T ss_conf 97899758-----8-99999999999999999 No 29 >2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A Probab=53.79 E-value=11 Score=17.24 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=41.6 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCC--CHHH--------------HHHHHHHHHCCCCCEEEEEECCE--EE Q ss_conf 9899999999997299747999726--981324--9899--------------99999998619981289874343--56 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTG--GDPLIL--SHKR--------------LQKVLKTLRYIKHVQILRFHSRV--PI 186 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSG--GDPl~l--~~~~--------------L~~ll~~L~~i~hv~~IRi~TR~--pv 186 (352) +..++++.+..|.+|+.|..+|+-. |-|+-- .++. -...+..|..-+.+..+|+.||- .+ T Consensus 10 ~msevEetl~RI~~~kgV~G~iIln~~G~pirst~d~~~a~~yA~~~~~l~~~Ar~~vrdlDp~deL~~LRiRTkk~Ei~ 89 (106) T 2hz5_A 10 SMAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIM 89 (106) T ss_dssp -----CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEE T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE T ss_conf 39999999999855999469999979999888817818899999999999999999998379877679999861884899 Q ss_pred EEH Q ss_conf 343 Q gi|254781065|r 187 VDP 189 (352) Q Consensus 187 ~~P 189 (352) +.| T Consensus 90 IaP 92 (106) T 2hz5_A 90 VAP 92 (106) T ss_dssp EEC T ss_pred EEC T ss_conf 975 No 30 >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A Probab=53.06 E-value=12 Score=17.16 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH Q ss_conf 89999999999729974799972698132498 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSH 159 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~ 159 (352) -.++.++++.+.++++++=|||||+.+...+. T Consensus 34 ~~~l~~~l~~~~~d~~~~~vvl~~~~~~f~~g 65 (258) T 2pbp_A 34 VAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG 65 (258) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESTTEEECC T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCEECC T ss_conf 99999999998609985899990798640127 No 31 >2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* Probab=52.53 E-value=8 Score=18.31 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) ..++.++++.++++++++=|||+|. T Consensus 41 ~~~l~~al~~~~~d~~v~~vvl~g~ 65 (272) T 2iex_A 41 VNEMIDAFTKARDDSNIGVIILTGA 65 (272) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999999861999559998437 No 32 >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Probab=51.24 E-value=12 Score=17.10 Aligned_cols=106 Identities=8% Similarity=0.074 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCC------------HHHHHHHHHHHHCCCCC-------------------E Q ss_conf 8999999999972997479997269813249------------89999999998619981-------------------2 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILS------------HKRLQKVLKTLRYIKHV-------------------Q 176 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~------------~~~L~~ll~~L~~i~hv-------------------~ 176 (352) ..++..+++.++++++|+=|||+|++.-..+ ......+...+...+-. - T Consensus 35 ~~~l~~~l~~~~~d~~v~~vVl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~ 114 (255) T 3p5m_A 35 LEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALAC 114 (255) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHC T ss_conf 99999999999749992799996667653357743012223431257799999981999899997898873778998737 Q ss_pred EEEEEC-CEEEEEHH-----------------HCCHHHHHHHHHCCCC--------EEEEECCCCHHHCCHHHHHHHHHH Q ss_conf 898743-43563434-----------------3399999998625993--------899933699588699999999999 Q gi|254781065|r 177 ILRFHS-RVPIVDPQ-----------------RINPELIQCLKEAGKP--------VYIAIHANHPYEFSEEAIAAISRL 230 (352) Q Consensus 177 ~IRi~T-R~pv~~P~-----------------Rit~~L~~~l~~~~~~--------~~iv~H~NHp~Elt~~~~~A~~~L 230 (352) .+||.| ..-..+|+ ++.......+--.++. .-++.++--+.|+.+++.+..+++ T Consensus 115 D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~vv~~~~l~~~a~~~a~~i 194 (255) T 3p5m_A 115 DLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSV 194 (255) T ss_dssp SEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHH T ss_pred CEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHH T ss_conf 88997899889677204064655576324554454310021111378788999987699348818279999999999999 Q ss_pred HHC Q ss_conf 987 Q gi|254781065|r 231 ANA 233 (352) Q Consensus 231 ~~~ 233 (352) .+. T Consensus 195 a~~ 197 (255) T 3p5m_A 195 SGG 197 (255) T ss_dssp HTS T ss_pred HCC T ss_conf 669 No 33 >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Probab=50.91 E-value=12 Score=17.07 Aligned_cols=27 Identities=15% Similarity=0.296 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) .+++.++++.+.++++|+=|||||+.+ T Consensus 34 ~~~l~~~l~~~~~d~~vr~vvl~g~g~ 60 (261) T 3pea_A 34 MHDVTELIDQVEKDDNIRVVVIHGEGR 60 (261) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESTT T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 999999999998688928999948999 No 34 >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Probab=50.18 E-value=11 Score=17.44 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CC Q ss_conf 899999999997299747999726-98 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG-GD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD 153 (352) -+++..+++.+.++++++=|||+| |+ T Consensus 41 ~~el~~~l~~~~~d~~~~~vVl~g~g~ 67 (272) T 1hzd_A 41 IKMLSKAVDALKSDKKVRTIIIRSEVP 67 (272) T ss_dssp HHHHHHHHHHHHHCSSCSEEEEEESBT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999998599964999962788 No 35 >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to P3F inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Probab=49.83 E-value=9.9 Score=17.65 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=7.9 Q ss_pred CEEECCCEEEEEECCCC Q ss_conf 14520753799972743 Q gi|254781065|r 89 IVHRYPDRILLKLLHVC 105 (352) Q Consensus 89 l~hkY~~rvLl~~t~~C 105 (352) +.|++..-+++.+.++. T Consensus 192 ~a~~~~~g~~~vVDnT~ 208 (415) T 2fq6_A 192 AVRSVVPDAIIMIDNTW 208 (415) T ss_dssp HHHHHCTTCEEEEECTT T ss_pred HHHHCCCCCEEEEECCC T ss_conf 98751579779997786 No 36 >1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Probab=49.65 E-value=13 Score=16.80 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCC--- Q ss_conf 99999999997299747999726981324989999999998619981289874343563434339999999862599--- Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGK--- 205 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~--- 205 (352) +..+..+++.++... =++|++|||++.+. ..+++..+.+.. +. ++ +.|- |+. ........+. T Consensus 81 e~~~~~~~~~~~G~~--V~~L~~GDP~~y~~--~~~l~~~~~~~~-i~-ve-------vVPG-ISS-~~aaaa~~g~plt 145 (285) T 1cbf_A 81 EMVGTMLDRMREGKM--VVRVHTGDPAMYGA--IMEQMVLLKREG-VD-IE-------IVPG-VTS-VFAAAAAAEAELT 145 (285) T ss_dssp HHHHHHHHHHTTTCC--EEEEESBCTTTTCC--CHHHHHHHHHTT-CE-EE-------EECC-CCH-HHHHHHHTTCCSC T ss_pred HHHHHHHHHHHCCCE--EEEEECCCCCCCCC--HHHHHHHHHHCC-CE-EE-------ECCC-CCH-HHHHCCCCCCCCC T ss_conf 999999999978997--99993888663165--899999999779-75-99-------8388-404-5442013477434 Q ss_pred ------CEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-EECCC--C Q ss_conf ------38999336995886999999999999879898232798623457889999999999986982423-01134--5 Q gi|254781065|r 206 ------PVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYY-LHHPD--L 276 (352) Q Consensus 206 ------~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYY-l~~~d--~ 276 (352) .+.+.+. |..+-.++ .+.+..+.+.+-++ |++++.+. +.++.+.|.+.|..|.. +..+. - T Consensus 146 ~~~~~~~~~~~~~--~g~~~~~~-~~~l~~l~~~~~tl----vi~~~~~~----~~~i~~~L~~~g~~~dtpv~vv~~~~ 214 (285) T 1cbf_A 146 IPDLTQTVILTRA--EGRTPVPE-FEKLTDLAKHKCTI----ALFLSSTL----TKKVMKEFINAGWSEDTPVVVVYKAT 214 (285) T ss_dssp BTTTBCCEEEEEC--CSSSCCCG-GGCHHHHHTTCSEE----EEESCTTC----HHHHHHHHHHTTCCTTCEEEEEESTT T ss_pred CCCCCCEEEEEEC--CCCCCCCH-HHHHHHHHCCCCEE----EEEECCCC----HHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 4532416999815--78766611-77899985369889----99976655----79999999964999998899999599 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 76521011869999999999998288865410663 Q gi|254781065|r 277 AAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYIL 311 (352) Q Consensus 277 v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~ 311 (352) .+...-++.++++--+.++. .|+..|..++ T Consensus 215 ~~~E~i~~~TL~el~e~~~~-----~~~~~p~liv 244 (285) T 1cbf_A 215 WPDEKIVRTTVKDLDDAMRT-----NGIRKQAMIL 244 (285) T ss_dssp STTCEEEEEEGGGHHHHHHH-----TTCCSSEEEE T ss_pred CCCCEEEEEEHHHHHHHHHH-----CCCCCCEEEE T ss_conf 58828999899999999997-----5999988999 No 37 >2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} Probab=48.73 E-value=13 Score=16.70 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=85.5 Q ss_pred CEEEEEEE-CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-----CCEEEEEHH-HC---CHHHHHHHHHCC----CCE- Q ss_conf 74799972-6981324989999999998619981289874-----343563434-33---999999986259----938- Q gi|254781065|r 143 QIWEVIFT-GGDPLILSHKRLQKVLKTLRYIKHVQILRFH-----SRVPIVDPQ-RI---NPELIQCLKEAG----KPV- 207 (352) Q Consensus 143 eI~eVilS-GGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~-----TR~pv~~P~-Ri---t~~L~~~l~~~~----~~~- 207 (352) ++.++=+. ++|+. ++...-..+|..|..=-....-+-. -++-|.++. +| -.++.+++.+.- .++ T Consensus 82 ~~~~~~~~~~~~~~-~~~~~a~~ll~~L~~G~~~t~~~~~~~~~~~~v~v~ls~v~f~~~y~~f~~C~~~Llp~~f~~i~ 160 (278) T 2zf8_A 82 RITNLKFFKQFDGY-VGGQTAWGILSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQNKYNAFSDCISNLLKYSFEDIA 160 (278) T ss_dssp TCCEEEEEEEECSE-EESHHHHHHHHHHHHTCCCEEEBCCSSSSCCEEEEBCCCSSHHHHHHHHHHHHHTSCSCSSTTSE T ss_pred CCCEEEEECCCCCC-CCCCCHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCC T ss_conf 54144431467732-23644899999997899016723044577861799737300577778899999746798978812 Q ss_pred EEEECCCCH-HHCCHHHHHHHHHHHHCCCEEEE-CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC Q ss_conf 999336995-88699999999999987989823-2798623457889999999999986982423011345765210118 Q gi|254781065|r 208 YIAIHANHP-YEFSEEAIAAISRLANAGIILLS-QSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL 285 (352) Q Consensus 208 ~iv~H~NHp-~Elt~~~~~A~~~L~~~Gv~v~n-QsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v 285 (352) ..+++|.-= .+|+++.++.+.++.+.=-.--+ ..|++.|--|+... -.....+ T Consensus 161 ~t~v~F~~gs~~L~~~~~~~L~~ia~~Lk~~p~~~~I~I~GhTD~~G~-------------------------~~~N~~L 215 (278) T 2zf8_A 161 FTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDG-------------------------KSASQSL 215 (278) T ss_dssp EEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC--------------------------------CCCHHH T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC-------------------------HHHHHHH T ss_conf 277984899732799999999999999986899657999988289997-------------------------6888999 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEECCHHHEE--ECCCEEEEECCCCCEE Q ss_conf 69999999999998288865410663178888823555102123--1398799981699887 Q gi|254781065|r 286 TIEEGQKIVASLKEKISGLCQPFYILDLPGGYGKVKIDTHNIKK--VGNGSYCITDHHNIVH 345 (352) Q Consensus 286 ~~~~~~~i~~~l~~~lsG~~~P~~v~d~p~~~GKv~i~~~~~~~--~~~~~~~l~~~~g~~~ 345 (352) +.++|..+.+.|... |+..-+.. +-|-|..-|+.++.... ..+.++.++-...+++ T Consensus 216 S~~RA~~V~~~L~~~--GI~~~rI~--v~g~Ge~~Pi~~n~t~~~r~~NRRVeI~l~r~ev~ 273 (278) T 2zf8_A 216 SERRAESLRDYFQSL--GLPEDRIQ--VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQVH 273 (278) T ss_dssp HHHHHHHHHHHHHHH--SCCTTSEE--CCEEC------------------CEEEECCCCC-- T ss_pred HHHHHHHHHHHHHHC--CCCHHHEE--EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEEE T ss_conf 999999999999985--99979999--99975657779994978997349799999736973 No 38 >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Probab=48.06 E-value=6.9 Score=18.76 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=6.6 Q ss_pred EEEEECCCCHH Q ss_conf 89993369958 Q gi|254781065|r 207 VYIAIHANHPY 217 (352) Q Consensus 207 ~~iv~H~NHp~ 217 (352) =++.+||-.|- T Consensus 446 r~~g~HffnP~ 456 (715) T 1wdk_A 446 NFVGMHFFNPV 456 (715) T ss_dssp GEEEEECCSST T ss_pred EEEEEECCCCH T ss_conf 05885114861 No 39 >1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A* Probab=48.00 E-value=14 Score=16.63 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999999999986982423011345765210118699999999999982 Q gi|254781065|r 252 EILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 (352) Q Consensus 252 ~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~ 300 (352) .....+.+.|...|+.+=-+..-|-..=..+=+++-..-.++...+... T Consensus 322 ~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~nriSp~~l~~lL~~~~~~ 370 (489) T 1w79_A 322 AGLVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAGSA 370 (489) T ss_dssp HHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTCBBCHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 9999999999865898567477058878866665999999999998859 No 40 >3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} Probab=47.77 E-value=8.4 Score=18.13 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) -.++.++++.++++++++=|||+|+ T Consensus 56 ~~eL~~~l~~~~~d~~v~~vVl~g~ 80 (288) T 3h02_A 56 VKEMIQALADARYDDNVGVIILTGE 80 (288) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999999999973999668999879 No 41 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=47.67 E-value=14 Score=16.59 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 999999999972997479997-26981324-----98999999999861998128987 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKTLRYIKHVQILRF 180 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~L~~i~hv~~IRi 180 (352) +.+++..++++++|+|.++-. ||+.-+.+ +.+.+..++++|.+++.|..++- T Consensus 98 ~~~~~~~~~l~~~p~V~~~~~vtG~~dl~~~v~~~~~~~l~~~i~~l~~~~gV~~~~t 155 (171) T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHT 155 (171) T ss_dssp TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEE T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 4058999999759987899994178878999998999999999999836899749999 No 42 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Probab=47.67 E-value=11 Score=17.23 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=10.5 Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 7479997269813249899999999986 Q gi|254781065|r 143 QIWEVIFTGGDPLILSHKRLQKVLKTLR 170 (352) Q Consensus 143 eI~eVilSGGDPl~l~~~~L~~ll~~L~ 170 (352) .+++++++|| +.+|..|++.+..+. T Consensus 249 ~~k~lvvsGG---VAaN~~LR~~l~~~~ 273 (334) T 3eno_A 249 GKDEILMAGG---VALNRRLRDMVTNMA 273 (334) T ss_dssp TCSEEEEESS---GGGCHHHHHHHHHHH T ss_pred CCCEEEECCC---HHHHHHHHHHHHHHH T ss_conf 8880541485---778899999999999 No 43 >3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A Probab=46.81 E-value=14 Score=16.50 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCC--HH---HHH-----------HHHHHHHCCCCCEEEEEECCE Q ss_conf 99999999997299747999726--9813249--89---999-----------999998619981289874343 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTG--GDPLILS--HK---RLQ-----------KVLKTLRYIKHVQILRFHSRV 184 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSG--GDPl~l~--~~---~L~-----------~ll~~L~~i~hv~~IRi~TR~ 184 (352) .++++.+..|.+|+.+..+++.. |.|+--+ +. +.. ..+..|..-+.+..+|+.||- T Consensus 3 ~evEetl~ri~~~kgV~G~iI~n~~G~pirst~d~~~~~~yA~~~~~l~~~A~~~vr~lDp~del~~lRiRTkk 76 (97) T 3l7h_A 3 QEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKK 76 (97) T ss_dssp ------CHHHHTSTTEEEEEEEETTSCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESS T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 79999999985599944999997999876883785789999999999999999999707986766999986187 No 44 >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Probab=46.63 E-value=14 Score=16.48 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 999999999972997479997269813 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPL 155 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl 155 (352) .++.++++-+.++++|+=|||||++.. T Consensus 37 ~~L~~~l~~~~~d~~v~~vvl~g~g~~ 63 (260) T 1mj3_A 37 EELNQALETFEEDPAVGAIVLTGGEKA 63 (260) T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCSSE T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf 999999999985899079999779995 No 45 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Probab=45.91 E-value=15 Score=16.41 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=27.1 Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE Q ss_conf 997479997269813249899999999986199812 Q gi|254781065|r 141 KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQ 176 (352) Q Consensus 141 ~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~ 176 (352) ...++++++||| +.+|..|.+.++.+.+-..++ T Consensus 246 ~~~~~~lvvsGG---VaaN~~LR~~l~~~~~~~~~~ 278 (540) T 3en9_A 246 HTNKGEVMLVGG---VAANNRLREMLKAMCEGQNVD 278 (540) T ss_dssp HHTCSEEEEESG---GGGCHHHHHHHHHHHHHTTCE T ss_pred HHCCCEEEEECC---HHHHHHHHHHHHHHHHHCCCE T ss_conf 709297999854---999899999999999876999 No 46 >1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60 Probab=45.42 E-value=15 Score=16.36 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=63.7 Q ss_pred EEEECCCCCCC-----------CHHHHHHHHHHHHC-----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEE Q ss_conf 99726981324-----------98999999999861-----998128987434356343433999999986259938999 Q gi|254781065|r 147 VIFTGGDPLIL-----------SHKRLQKVLKTLRY-----IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIA 210 (352) Q Consensus 147 VilSGGDPl~l-----------~~~~L~~ll~~L~~-----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv 210 (352) +|+++|+|+.. +...+..+++.|.+ =..++.+.++... =.+..+++.+.+++.-.+ T Consensus 15 lLFas~~pls~~~la~~~~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~g~----~l~tk~e~~~~v~~l~~~---- 86 (162) T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGY----RFLTEPEFADLVRQLLAP---- 86 (162) T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEE----EEEECGGGHHHHHHHHSC---- T ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEE----EEEECHHHHHHHHHHCCC---- T ss_conf 997638988999999986658999999999999999987179856999968988----999778888999985266---- Q ss_pred ECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCC Q ss_conf 3369958869999999999998798982327986234578899999999999869 Q gi|254781065|r 211 IHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELR 265 (352) Q Consensus 211 ~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~g 265 (352) .-+.+|+..+.+.+.-+.-.+-.-..+-.-++|||-+.. +.+ |++.| T Consensus 87 ---~~~~~LS~aalEtLAiIAy~QPitr~eI~~iRGv~s~~~-l~~----L~~~g 133 (162) T 1t6s_A 87 ---VIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDYS-IDR----LLARG 133 (162) T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCCCSH-HHH----HHHTT T ss_pred ---CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH-HHH----HHHCC T ss_conf ---444656999999999999629958999999978883669-999----99869 No 47 >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Probab=45.11 E-value=15 Score=16.33 Aligned_cols=68 Identities=7% Similarity=0.116 Sum_probs=27.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 999999862599389993369958869999999999998798982327986234578899999999999869824 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP 268 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P 268 (352) +.+++.+.+..+.+++.+ +... .++..+|+....+.||.|. +|+.+-.+....-....+.|...||.- T Consensus 17 ~~i~~~I~~A~~~I~i~~-y~~~---~~~i~~aL~~a~~rGV~Vr---vl~d~~~~~~~~~~~~~~~l~~~gi~v 84 (155) T 1byr_A 17 VLVLSAIDSAKTSIRMMA-YSFT---APDIMKALVAAKKRGVDVK---IVIDERGNTGRASIAAMNYIANSGIPL 84 (155) T ss_dssp HHHHHHHHHCSSEEEEEE-SSBC---CHHHHHHHHHHHHTTCEEE---EEEESTTCCSHHHHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCEEEEEE-EECC---CHHHHHHHHHHHHCCCEEE---EEEEECCCCCCCCHHHHHHHHHCCCCC T ss_conf 999999996072999999-8427---8899999999998599399---999723753203399999998458874 No 48 >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Probab=45.00 E-value=15 Score=16.32 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=45.6 Q ss_pred HHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCH----HHHHHHHHCC Q ss_conf 99999999972-997479997269813249899999999986199812898743435634343399----9999986259 Q gi|254781065|r 130 DTEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP----ELIQCLKEAG 204 (352) Q Consensus 130 ~~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~----~L~~~l~~~~ 204 (352) ++++.++.+++ ++.++++=|++-+. ++++.+..+.+.|..-.+++.+.+.-- ++++ .|+++|+... T Consensus 28 ~~~e~l~~l~~n~~~L~~LnLnn~~~--i~~~~~~~l~~aL~~N~~L~~L~Ls~n-------~l~d~~~~~La~~L~~n~ 98 (197) T 1pgv_A 28 DVESCINRLREDDTDLKEVNINNMKR--VSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSP 98 (197) T ss_dssp CHHHHHHHHHTTCSSCCEEECTTCCS--SCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCS T ss_pred CHHHHHHHHHHCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHCCCCCEEEECCC-------CCCHHHHHHHHHHHHHCC T ss_conf 59999999995899873997759999--899999999999954894067870699-------884399999999998473 Q ss_pred CCEEEEECCCCHHHCCHHHHHHHHHHHH Q ss_conf 9389993369958869999999999998 Q gi|254781065|r 205 KPVYIAIHANHPYEFSEEAIAAISRLAN 232 (352) Q Consensus 205 ~~~~iv~H~NHp~Elt~~~~~A~~~L~~ 232 (352) .=-.+....| .++++...++..... T Consensus 99 ~L~~L~L~~n---~i~~~g~~~L~~aL~ 123 (197) T 1pgv_A 99 SLRVLNVESN---FLTPELLARLLRSTL 123 (197) T ss_dssp SCCEEECCSS---BCCHHHHHHHHHHTT T ss_pred HHHEEECCCC---CCCCHHHHHHHHHHH T ss_conf 5351220678---776689999999997 No 49 >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} Probab=45.00 E-value=15 Score=16.32 Aligned_cols=28 Identities=4% Similarity=0.100 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 8999999999972997479997269813 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL 155 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl 155 (352) -.++.++++.++++++|+=|||||+++. T Consensus 33 ~~~l~~~l~~~~~d~~v~~vVl~g~~~~ 60 (268) T 3i47_A 33 LTEMRIRLDSAINDTNVRVIVLKANGKH 60 (268) T ss_dssp HHHHHHHHHHHHHCTTCSEEEEEECSSC T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999999974999069999167776 No 50 >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Probab=44.89 E-value=15 Score=16.30 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 899999999997299747999726 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG 151 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG 151 (352) -.++.++++.+.++++|+=||||| T Consensus 28 ~~el~~~l~~~~~d~~v~~vvi~g 51 (253) T 1uiy_A 28 ALSLLQALDDLEADPGVRAVVLTG 51 (253) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 999999999997399965999978 No 51 >2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} Probab=43.96 E-value=16 Score=16.21 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=67.8 Q ss_pred HHHHHHHHH-C-CCEEEEEEECCCCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEE Q ss_conf 999999972-9-974799972698132-4989999999998619981289874343563434339999999862599389 Q gi|254781065|r 132 EAALAYIQE-K-SQIWEVIFTGGDPLI-LSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVY 208 (352) Q Consensus 132 ~~~~~Yi~~-~-~eI~eVilSGGDPl~-l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~ 208 (352) ..+.+|+.+ . ...+ |++-+|.+-. ....+.+.+.+.+++-+.++.+-..+.. ..++.....+.++|.+++..+- T Consensus 123 ~~~a~~l~~~~~~~~~-v~~~~g~~~~~~~~~R~~g~~~~l~~~~~~~i~~~~~~~--~~~~~a~~~~~~~L~~~~p~i~ 199 (332) T 2rjo_A 123 EETATQLFKSMGGKGG-VVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIK 199 (332) T ss_dssp HHHHHHHHHHTTTCEE-EEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEE T ss_pred HHHHHHHHHHCCCCEE-EEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHHHCCCCCE T ss_conf 9999988874499528-995788876447999999999999878997367666223--2106899999999973776651 Q ss_pred EEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHH Q ss_conf 99336995886999999999999879898232798623457889999999 Q gi|254781065|r 209 IAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM 258 (352) Q Consensus 209 iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~ 258 (352) .+.-.| +..+..+++.++++|.. .-+.+-|++++.+.+..+- T Consensus 200 ~I~~~n-----d~~a~g~~~al~~~g~~---~~i~vvG~D~~~~~~~~i~ 241 (332) T 2rjo_A 200 GVWAAN-----DDMALGAIEALRAEGLA---GQIPVTGMDGTQPGLVAIK 241 (332) T ss_dssp EEEESS-----HHHHHHHHHHHHHTTCB---TTBCEECSBCCHHHHHHHH T ss_pred EEEECC-----CHHHHHHHHHHHHCCCC---CCCEEEEECCCHHHHHHHH T ss_conf 999679-----78999999999976999---9928999899799999997 No 52 >2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Probab=42.11 E-value=17 Score=16.02 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=63.2 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCEEEEEHHHCCHHHHHHHHH------ Q ss_conf 99999999972997479997269813249899999999986199-81289874343563434339999999862------ Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK-HVQILRFHSRVPIVDPQRINPELIQCLKE------ 202 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~------ 202 (352) .....+...++.. +=|++++|||++.+. ..++++.+++.. .++ +.|- ++. ...... T Consensus 66 ~~~~~~~~~~~~~--~V~~l~~GDP~~~~~--~~~l~~~~~~~~i~v~----------vvPG-iS~--~~Aaaa~~~~~~ 128 (265) T 2z6r_A 66 NFENIVLPLAKEN--DVAFLTPGDPLVATT--HAELRIRAKRAGVESY----------VIHA-PSI--YSAVGITGLHIY 128 (265) T ss_dssp HHHHHTHHHHTTS--CEEEEESBCTTSSSS--THHHHHHHHHTTCCEE----------EECC-CCH--HHHGGGGTCCGG T ss_pred HHHHHHHHHHCCC--CEEEEECCCCCCCCC--HHHHHHHHHHCCCCEE----------EECC-CHH--HHHHHHHCCCCC T ss_conf 9999999996699--889995799888880--9999999998699679----------8047-319--999998379766 Q ss_pred -CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE--EEEC----HHHHHCCCCCHHHHHHHHHHHHHCCCEE---EEEE Q ss_conf -5993899933699588699999999999987989--8232----7986234578899999999999869824---2301 Q gi|254781065|r 203 -AGKPVYIAIHANHPYEFSEEAIAAISRLANAGII--LLSQ----SVLLKGINDDPEILANLMRTFVELRIKP---YYLH 272 (352) Q Consensus 203 -~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~--v~nQ----sVLLkgVND~~~~l~~L~~~L~~~gV~P---YYl~ 272 (352) .+..+.+. +-...-......+.+......|.. ++.. .+.--.++.-...|.++.+.+...|.-| -.+- T Consensus 129 ~~~~~~s~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ei~~~l~~~g~~~dtpv~v~ 206 (265) T 2z6r_A 129 KFGKSATVA--YPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVL 206 (265) T ss_dssp GBCCCEEEC--CCBTTBCCCHHHHHHHHHHHTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEE T ss_pred CCCCEEEEE--EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 667438999--863686788615568889875986676553057633774099999999999999973699999908988 Q ss_pred CCCCCCCCCCCCCCHHH Q ss_conf 13457652101186999 Q gi|254781065|r 273 HPDLAAGTSHFRLTIEE 289 (352) Q Consensus 273 ~~d~v~G~~hf~v~~~~ 289 (352) .---.....-+..++++ T Consensus 207 ~~~g~~dE~i~~gtL~e 223 (265) T 2z6r_A 207 ARAGSLNPTIRAGYVKD 223 (265) T ss_dssp ESTTSSSCEEEEEEHHH T ss_pred EECCCCCCEEEEEEHHH T ss_conf 88896983899989999 No 53 >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} Probab=42.09 E-value=17 Score=16.01 Aligned_cols=27 Identities=19% Similarity=0.522 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -+++.++++.++++++|+=|||+|+++ T Consensus 37 ~~~L~~al~~~~~d~~vr~vVl~g~g~ 63 (287) T 3gkb_A 37 MRELRTVLTTLADDSSVRVIVFSSADP 63 (287) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEESSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999998689945999967898 No 54 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Probab=41.59 E-value=17 Score=15.96 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=68.9 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCE-- Q ss_conf 9999999972997479997269813249899999999986199-8128987434356343433999999986259938-- Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIK-HVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV-- 207 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~-hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~-- 207 (352) -+.+++..++...| |+|++|||+..+. ..+++..+.+-. .++ +.|-- + .+...-...+.++ T Consensus 283 ~~~l~~~~~~G~~V--a~l~~GDP~~ys~--~~~~~~~~~~~~i~ve----------VVPGI-S-S~~aaaA~~g~pl~~ 346 (457) T 1pjq_A 283 NQILLREAQKGKRV--VRLKGGDPFIFGR--GGEELETLCHAGIPFS----------VVPGI-T-AASGCSAYSGIPLTH 346 (457) T ss_dssp HHHHHHHHHTTCEE--EEEESBCTTTSSS--HHHHHTTTTTTTCCEE----------EECCC-C-HHHHHHHHTTCCSCC T ss_pred HHHHHHHHHCCCEE--EEEECCCCCCCHH--HHHHHHHHHHCCEEEE----------ECCCC-C-HHHHHHHHCCCCCCC T ss_conf 99999999749859--9990688644166--9999998763783699----------74886-5-688999974997401 Q ss_pred -----EEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEE----EEEECCCCCC Q ss_conf -----9993369958869999999999998798982327986234578899999999999869824----2301134576 Q gi|254781065|r 208 -----YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKP----YYLHHPDLAA 278 (352) Q Consensus 208 -----~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~P----YYl~~~d~v~ 278 (352) .+..-..|....... -...|.+.+-++ |++++.+. +.++.+.|.+.|..+ .++..+- -+ T Consensus 347 ~~~~~~~~~~~~~~~~~~~~---~~~~la~~~~tl----Vi~~~~~~----~~~i~~~L~~~G~~~~tpv~vv~~~s-~~ 414 (457) T 1pjq_A 347 RDYAQSVRLVTGHLKTGGEL---DWENLAAEKQTL----VFYMGLNQ----AATIQEKLIAFGMQADMPVALVENGT-SV 414 (457) T ss_dssp TTTCSEEEEECC------CC---CHHHHHSSSEEE----EESSCSSS----HHHHHHHHHHTTCCTTCEEEEEESTT-ST T ss_pred CCCEEEEEEECCCCCCCCCC---CHHHHHCCCCEE----EEECCHHH----HHHHHHHHHHCCCCCCCEEEEEEECC-CC T ss_conf 56137999966988885412---899871899889----99897758----99999999956989998799998589-58 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 521011869999999999998288865410663 Q gi|254781065|r 279 GTSHFRLTIEEGQKIVASLKEKISGLCQPFYIL 311 (352) Q Consensus 279 G~~hf~v~~~~~~~i~~~l~~~lsG~~~P~~v~ 311 (352) +..-++..+++--+ ...++..|..++ T Consensus 415 ~E~i~~~tL~~l~~-------~~~~~~~~slIi 440 (457) T 1pjq_A 415 KQRVVHGVLTQLGE-------LAQQVESPALII 440 (457) T ss_dssp TCEEEEEEGGGHHH-------HTTSCCSSEEEE T ss_pred CCEEEEEEHHHHHH-------HHHCCCCCEEEE T ss_conf 85899989999899-------872799988999 No 55 >3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, zinc, alternative splicing, cytoplasm; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Probab=41.17 E-value=15 Score=16.34 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=11.0 Q ss_pred HHHHHHHHHCCCCCEEEEEECCE Q ss_conf 99999998619981289874343 Q gi|254781065|r 162 LQKVLKTLRYIKHVQILRFHSRV 184 (352) Q Consensus 162 L~~ll~~L~~i~hv~~IRi~TR~ 184 (352) -.++.+-|++-+||...=+.+|. T Consensus 115 A~~va~FL~~~~~v~L~If~sRL 137 (207) T 3ir2_A 115 AQEMAKFISKNKHVSLCIKTARI 137 (207) T ss_dssp HHHHHHHHHHCTTEEEEEEEEEC T ss_pred HHHHHHHHHHCCCEEEEEEHHHH T ss_conf 99999999768991798777652 No 56 >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structural genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Probab=40.83 E-value=18 Score=15.88 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=33.4 Q ss_pred HCCHHHHHHHHHCCCCEEEEEC-CCCHHHCCHHHHHHHHHHHHCCCEEE Q ss_conf 3399999998625993899933-69958869999999999998798982 Q gi|254781065|r 191 RINPELIQCLKEAGKPVYIAIH-ANHPYEFSEEAIAAISRLANAGIILL 238 (352) Q Consensus 191 Rit~~L~~~l~~~~~~~~iv~H-~NHp~Elt~~~~~A~~~L~~~Gv~v~ 238 (352) .+...+.+.+.+..+.++|.+- |+ .++...+|+.++.+.|+.|. T Consensus 258 ~~~~~l~~~i~~A~~~I~I~tpYf~----p~~~~~~aL~~a~~rgv~V~ 302 (458) T 3hsi_A 258 ELNQVIEDLFLQVQKKLVICTPYFN----FPRTLQHKIATLLENGKRVE 302 (458) T ss_dssp HHHHHHHHHHHTCSSEEEEECSSSC----CCHHHHHHHHHHHTTTCEEE T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEC----CCHHHHHHHHHHHHCCCCEE T ss_conf 8999999999845545999985406----99899999999986799889 No 57 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=40.83 E-value=18 Score=15.88 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 9999999997299747999726981324------989999999998619981289874 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVLKTLRYIKHVQILRFH 181 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll~~L~~i~hv~~IRi~ 181 (352) .+++..++++++|+|.++-..-|+--.+ +.+.+..++++|.+++.|..+.-. T Consensus 79 ~~~~~~~~l~~~p~V~~~~~~tG~~dl~~~v~~~~~~~l~~~~~~l~~~~gv~~~~t~ 136 (151) T 2cyy_A 79 KYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTM 136 (151) T ss_dssp CHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEE T ss_pred CHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 0589999997699930999820688789999989999999999998459997599999 No 58 >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Probab=40.50 E-value=14 Score=16.59 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=36.8 Q ss_pred CHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEE Q ss_conf 0000112233012555567898999999999972997479997269813249899999999986199812898743435 Q gi|254781065|r 107 VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP 185 (352) Q Consensus 107 ~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~p 185 (352) .+|+=|||-.+-+.......+.+++.+.+.-+..+..+==.++.--||..--+..|.+++ ..-..|=+.+|.= T Consensus 35 ~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~~~~~~~~Vv~VvD~~d~~~S~~~~l~~~~------~~k~~ilVlNK~D 107 (368) T 3h2y_A 35 VICQRCFRLKHYNEIQDVSLTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV------GNNKVLLVGNKAD 107 (368) T ss_dssp ---------------------CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS------SSSCEEEEEECGG T ss_pred EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHH------CCCCEEEEEECCC T ss_conf 786224156536846567699899999999863248779999847888646387599986------7998899997823 No 59 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Probab=40.40 E-value=8.6 Score=18.09 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=26.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEE Q ss_conf 99999986259938999336995886999999999999879898 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v 237 (352) ++.++.+++.+.+-.+-|||+|-++...+..+..+.+...|+.+ T Consensus 253 ~eal~~~~~~~~k~lvLtH~sh~~p~~~~~~~~~~~~~~~gv~v 296 (321) T 3jxp_A 253 GGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV 296 (321) T ss_dssp TCHHHHHTTCSSSEEEEESBCTTCGGGSTTCHHHHHHHHTTEEE T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE T ss_conf 99999998589984999967999846574979999776379498 No 60 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=40.00 E-value=18 Score=15.80 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHHH-HHHCCCCCEEEEEE Q ss_conf 999999999729974799972698-1324-----9899999999-98619981289874 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVLK-TLRYIKHVQILRFH 181 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll~-~L~~i~hv~~IRi~ 181 (352) ..++..+++++.|+|.++-...|| -+++ +.+.|..++. .|.++|.|..+.-+ T Consensus 76 ~~~~v~~~l~~~p~V~~v~~vtG~~Dl~~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t~ 134 (141) T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPA 134 (141) T ss_dssp GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEE T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 49999999727981999999956788999999899999999999997359997189999 No 61 >3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Probab=39.96 E-value=12 Score=17.04 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=23.5 Q ss_pred HHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH Q ss_conf 886999999999999879898232798623457889999999999 Q gi|254781065|r 217 YEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF 261 (352) Q Consensus 217 ~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L 261 (352) +++-|++.++++.|+++|+.+ .+|.| |+..+-..+.++| T Consensus 162 D~~R~~a~~~i~~L~~~Gi~v----~mlTG--D~~~~a~~ia~~l 200 (287) T 3a1c_A 162 DTLKESAKPAVQELKRMGIKV----GMITG--DNWRSAEAISREL 200 (287) T ss_dssp CCBCTTHHHHHHHHHHTTCEE----EEECS--SCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHCCCCE----EEECC--CCHHHHHHHHHHC T ss_conf 888613999999999859958----99869--9679999999982 No 62 >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Probab=39.90 E-value=18 Score=15.79 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -.++.++++.++++++|+=|||||... T Consensus 38 ~~~l~~al~~~~~d~~v~vvvl~g~g~ 64 (276) T 2j5i_A 38 NREMIDVLETLEQDPAAGVLVLTGAGE 64 (276) T ss_dssp HHHHHHHHHHHHTCTTEEEEEEEESTT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999997399917999978988 No 63 >2djw_A Probable transcriptional regulator, ASNC family; structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8} Probab=39.56 E-value=16 Score=16.12 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHH-HHHHCCCCCEEEE Q ss_conf 9999999999729974799972698132------4989999999-9986199812898 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLI------LSHKRLQKVL-KTLRYIKHVQILR 179 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~------l~~~~L~~ll-~~L~~i~hv~~IR 179 (352) ...++..+.+++.|+|.++-..-|+.=. -+.+.|..++ +.+.++|.|..++ T Consensus 13 ~~~~~v~~~l~~~peV~~~~~vtG~~Dli~~v~~~d~~~l~~~l~~~i~~~~gV~~t~ 70 (92) T 2djw_A 13 NRVQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTE 70 (92) T ss_dssp GGHHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEE T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 8799999999749888564262388889999998999999999999851599994699 No 64 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=39.54 E-value=16 Score=16.17 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=17.2 Q ss_pred CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 2798623457889999999999986982423 Q gi|254781065|r 240 QSVLLKGINDDPEILANLMRTFVELRIKPYY 270 (352) Q Consensus 240 QsVLLkgVND~~~~l~~L~~~L~~~gV~PYY 270 (352) +-|+-=||--|...-..|.+.+...|+.-|+ T Consensus 247 ~lvv~GGVAAN~~LR~~L~~~~~~~g~~~~~ 277 (330) T 2ivn_A 247 EVVLVGGVAANNRLREMLRIMTEDRGIKFFV 277 (330) T ss_dssp EEEEESGGGGCHHHHHHHHHHHHHHTCEEEC T ss_pred CEEECCHHHHHHHHHHHHHHHHHHCCCEEEC T ss_conf 5232215776699999999999975998985 No 65 >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Probab=38.82 E-value=19 Score=15.67 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) -.++.++++.+.++++|+=|||||.. T Consensus 32 ~~el~~~l~~~~~d~~v~vvvltg~g 57 (269) T 1nzy_A 32 MQEVTDALNRAEEDDSVGAVMITGAE 57 (269) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEST T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 99999999999858891699997999 No 66 >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Probab=38.58 E-value=19 Score=15.65 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) ..++.++++.+.++++++=|||||+.+ T Consensus 38 ~~~L~~~l~~~~~d~~v~~vvl~g~g~ 64 (265) T 3kqf_A 38 LEELQNILTQINEEANTRVVILTGAGE 64 (265) T ss_dssp HHHHHHHHHHHHTCTTCCEEEEEESSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999986489956999965899 No 67 >2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} Probab=38.52 E-value=17 Score=15.93 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 999999999972997479997269 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) .+..++++++++. .|+=++|||- T Consensus 139 ~~a~~~I~~L~~~-gi~v~mlTGD 161 (263) T 2iye_A 139 PNLKDYLEKLKNE-GLKIIILSGD 161 (263) T ss_dssp SCCHHHHHHHHGG-GCEEEEECSS T ss_pred CHHHHHHHHHHHC-CCEEEEECCC T ss_conf 3099999999986-9969994587 No 68 >3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* Probab=37.96 E-value=19 Score=15.64 Aligned_cols=16 Identities=19% Similarity=0.013 Sum_probs=8.7 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 9998999999999853 Q gi|254781065|r 19 LIKKEQIDEIKEISNH 34 (352) Q Consensus 19 ~Ls~e~~~~~~~~~~~ 34 (352) .++++.++.+.++.+. T Consensus 21 ~i~~~~~~ai~~l~~~ 36 (246) T 3f9r_A 21 CQTDEMRALIKRARGA 36 (246) T ss_dssp CCCHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHC T ss_conf 8899999999999968 No 69 >3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A* Probab=37.53 E-value=20 Score=15.54 Aligned_cols=51 Identities=6% Similarity=-0.046 Sum_probs=35.2 Q ss_pred CHHHHHHHHHH-HHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 88999999999-9986982423011345765210118699999999999982 Q gi|254781065|r 250 DPEILANLMRT-FVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 (352) Q Consensus 250 ~~~~l~~L~~~-L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~ 300 (352) +.+......+. +-.+|+.+.-+..-|-..-..+=+++-+.-.++.+.+.+. T Consensus 306 ~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGLSr~N~it~~~l~~lL~~~~~~ 357 (453) T 3a3d_A 306 SFQLGTLAVKSILQKQGIRFGNSILADGSGLSRHNLVAPKTMLSVLEYIAKN 357 (453) T ss_dssp CHHHHHHHHHHHHHHTTCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 0778898888899972999765255277777734431899999999998759 No 70 >1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.14.1.3 PDB: 1q51_A 1rjm_A* 1rjn_A* Probab=36.99 E-value=20 Score=15.48 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) .+++.++++-++++++|+=|||||. T Consensus 66 ~~eL~~al~~~~~d~~vrvvVltG~ 90 (314) T 1q52_A 66 VDELYRVLDHARMSPDVGVVLLTGN 90 (314) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999999999974999758999578 No 71 >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Probab=36.29 E-value=21 Score=15.41 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) ..++..+++.+.++++|+=|||||. T Consensus 64 ~~el~~~l~~~~~d~~vrviVltG~ 88 (333) T 3njd_A 64 PLELSALVERADLDPDVHVILVSGR 88 (333) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999999972999459999789 No 72 >3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium} Probab=35.34 E-value=21 Score=15.30 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=32.9 Q ss_pred CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 7145207537999727430000011223301255556789---899999999997299747999726981 Q gi|254781065|r 88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLS---SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~---~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) -++....|.|..++-++= +..+.++ -+++.++++.++++++|+=|||||..+ T Consensus 26 ~v~~~~~d~Va~ItlnrP---------------~~~Nal~~~~~~el~~al~~~~~d~~vr~vvltg~g~ 80 (270) T 3p85_A 26 ILLSNTEERVRTLTLNRP---------------QARNALSAALRDRFFGALADAETDDDVDVVIITGADP 80 (270) T ss_dssp CEEEEEETTEEEEEECCG---------------GGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTT T ss_pred EEEEEEECCEEEEEECCC---------------CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 599997899999996588---------------8779989999999999999997598916999979986 No 73 >1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylation, structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Probab=35.30 E-value=21 Score=15.30 Aligned_cols=107 Identities=25% Similarity=0.265 Sum_probs=58.7 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHH--------CCHHHH Q ss_conf 898999999999972997479997269813249899999999986199812898743435634343--------399999 Q gi|254781065|r 126 LSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQR--------INPELI 197 (352) Q Consensus 126 ~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~R--------it~~L~ 197 (352) .+.+.+.+-++.+.++-.++ +|.+|- +-+.+..+.+.+.|++.+... .++.|-- ..++.+ T Consensus 53 ~~~~~~~~ql~~l~~d~~~~-aIkiG~---l~s~~~~~~v~~~l~~~~~~~--------~v~dpv~~~~~~~~~~~~~~~ 120 (258) T 1ub0_A 53 LPPEVVYAQIESVAQDFPLH-AAKTGA---LGDAAIVEAVAEAVRRFGVRP--------LVVDPVMVAKSGDPLLAKEAA 120 (258) T ss_dssp CCHHHHHHHHHHHHHHSCCS-EEEECC---CCSHHHHHHHHHHHHHTTCCS--------EEECCCC---------CHHHH T ss_pred CCHHHHHHHHHHHCCCCCCC-EEEECC---CCCCHHHHHHHHHHHHCCCCC--------EEECCCCCCCCCCCCCCHHHH T ss_conf 89899999999851388852-478845---565139999999999659977--------666563356789857898999 Q ss_pred HHHHHCCCC-EEEEECCCCHH--H---C-------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHH Q ss_conf 998625993-89993369958--8---6-------999999999999879898232798623457889 Q gi|254781065|r 198 QCLKEAGKP-VYIAIHANHPY--E---F-------SEEAIAAISRLANAGIILLSQSVLLKGINDDPE 252 (352) Q Consensus 198 ~~l~~~~~~-~~iv~H~NHp~--E---l-------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~ 252 (352) ..+.+.=.| ..+.| || | | .+++.+|.+.|.+.|. +.|+++|.+.+.+ T Consensus 121 ~~~~~~L~p~adiiT----PN~~Ea~~L~g~~~~~~~~~~~aa~~l~~~g~----~~Vlitg~~~~~~ 180 (258) T 1ub0_A 121 AALKERLFPLADLVT----PNRLEAEALLGRPIRTLKEAEEAAKALLALGP----KAVLLKGGHLEGE 180 (258) T ss_dssp HHHHHHTGGGCSEEC----CBHHHHHHHHCSCCCSHHHHHHHHHHHHTTSC----SCEEEEEEECC-- T ss_pred HHHHHHHCCCCEEEC----CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CEEEECCCCCCCC T ss_conf 999987256745734----99999999858898998999999999997289----6599626643322 No 74 >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Probab=35.01 E-value=20 Score=15.46 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC--CCCCC-------C-------------HHHHHHHHHHHHCCCCCE--------- Q ss_conf 8999999999972997479997269--81324-------9-------------899999999986199812--------- Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG--DPLIL-------S-------------HKRLQKVLKTLRYIKHVQ--------- 176 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG--DPl~l-------~-------------~~~L~~ll~~L~~i~hv~--------- 176 (352) ..++.++++.++++++|+=|||+|. +-+.- . ...+..++..|...|-.- T Consensus 36 ~~eL~~al~~~~~d~~v~vvVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 115 (289) T 3h0u_A 36 VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRAR 115 (289) T ss_dssp HHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEE T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 99999999998539895699992789980114015454443201013433456789999999999689989980599524 Q ss_pred ----------EEEEECC--EEEEEHHH-C--C------HHHHHHHH--------HCCCCEE--------EEECCCCHHHC Q ss_conf ----------8987434--35634343-3--9------99999986--------2599389--------99336995886 Q gi|254781065|r 177 ----------ILRFHSR--VPIVDPQR-I--N------PELIQCLK--------EAGKPVY--------IAIHANHPYEF 219 (352) Q Consensus 177 ----------~IRi~TR--~pv~~P~R-i--t------~~L~~~l~--------~~~~~~~--------iv~H~NHp~El 219 (352) .+||.|+ .-...|+. + . .-|.+++. -.++++- ++..+--+.|+ T Consensus 116 GgG~~lal~cD~~iaa~e~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l 195 (289) T 3h0u_A 116 GAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAEL 195 (289) T ss_dssp THHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHH T ss_pred CCHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHH T ss_conf 63037877177135635886153664465258886425777765109999999983994769999987997187188799 Q ss_pred CHHHHHHHHHHHHCC Q ss_conf 999999999999879 Q gi|254781065|r 220 SEEAIAAISRLANAG 234 (352) Q Consensus 220 t~~~~~A~~~L~~~G 234 (352) ..++.+-.++|.+.. T Consensus 196 ~~~a~~~a~~la~~~ 210 (289) T 3h0u_A 196 DEFVAGIAARMSGFP 210 (289) T ss_dssp HHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999998679 No 75 >3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} Probab=34.64 E-value=22 Score=15.23 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=5.0 Q ss_pred CCHHHHHHHHHH Q ss_conf 998999999999 Q gi|254781065|r 20 IKKEQIDEIKEI 31 (352) Q Consensus 20 Ls~e~~~~~~~~ 31 (352) ++++..+.+... T Consensus 23 i~~~~~~al~~l 34 (279) T 3mpo_A 23 LAQATIDAVQAA 34 (279) T ss_dssp -CHHHHHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 099999999999 No 76 >1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1 Probab=34.31 E-value=22 Score=15.19 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=46.2 Q ss_pred CHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHH-CCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 99999998625993899933699588699999999999987989823279862-3457889999999999986982423 Q gi|254781065|r 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLK-GINDDPEILANLMRTFVELRIKPYY 270 (352) Q Consensus 193 t~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLk-gVND~~~~l~~L~~~L~~~gV~PYY 270 (352) +.++++.+.+.+-. -+|.......-+.+...++++++.+.|++|..-|=-+. +||.+... --+.|.++||.|-+ T Consensus 317 ~~~~l~~~~~~g~~-GiVl~g~G~G~vp~~~~~~l~~a~~~gi~VV~tSqc~~G~V~~~~Y~---~G~~L~~~GvI~~g 391 (438) T 1zq1_A 317 SSEIIDFLVDKGYK-GIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYS---TGRKLLKAGVIPCE 391 (438) T ss_dssp CTHHHHHHHHTTCS-EEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSH---HHHHHHHTTCEECT T ss_pred CHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC---CHHHHHHCCEEECC T ss_conf 88999999867997-99991627988998999999999978957999577897882776553---45779869989899 No 77 >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Probab=33.92 E-value=22 Score=15.15 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) ..++..+++.+..+++|+=|||||+. T Consensus 196 ~~eL~~al~~~~~D~~VrvVVLtGa~ 221 (440) T 2np9_A 196 VDDMETAVDLALLDPGVRVGLLRGGV 221 (440) T ss_dssp HHHHHHHHHHHHHCTTCSEEEEEECB T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999999999629996499996888 No 78 >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Probab=33.49 E-value=23 Score=15.10 Aligned_cols=47 Identities=28% Similarity=0.188 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC--------CCCCCCC---H--------HHHHHHHHHHHCCCC Q ss_conf 899999999997299747999726--------9813249---8--------999999999861998 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG--------GDPLILS---H--------KRLQKVLKTLRYIKH 174 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG--------GDPl~l~---~--------~~L~~ll~~L~~i~h 174 (352) -.++..+++.++++++|+=|||+| +|--.+. + .....++..+...+- T Consensus 53 ~~eL~~al~~~~~d~~i~vvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (263) T 2j5g_A 53 HREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEV 118 (263) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCS T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999997599985999978899752887231334445531014667899999999996699 No 79 >3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} Probab=33.34 E-value=23 Score=15.09 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC Q ss_conf 899999999997299747999726-9813249899999999986199812898743435634343399999998625993 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG-GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP 206 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG-GDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~ 206 (352) ++++.++.+.+.++ +++.|+++| |+..... .....+++++..++ + -++.|..+...-.. ..... T Consensus 35 ~e~~~~~a~~l~~r-~~~~I~~~G~GsS~~aa-~~a~~~~e~~~~i~-v---------~~~~~~~~~~~~~~---~~~~t 99 (366) T 3knz_A 35 REDLWRAAQALTER-GVTRIILTGSGTSYHGA-LTARTFMQRWCALP-V---------DVCWPFMLDDETLA---RSGKA 99 (366) T ss_dssp CHHHHHHHHHHHHT-TCCEEEEECCHHHHHHH-HHHHHHHHHHHTSC-E---------EEECGGGCCHHHHH---HSCSE T ss_pred HHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHH-HHHHHHHHHHHCCC-E---------EEECHHHHCCCCCC---CCCCE T ss_conf 99999999999867-99989999841799999-99999999985996-7---------99556774077778---99981 Q ss_pred EEEEECCCCHHHCCHHHHHHHHHHHHCCCEEE Q ss_conf 89993369958869999999999998798982 Q gi|254781065|r 207 VYIAIHANHPYEFSEEAIAAISRLANAGIILL 238 (352) Q Consensus 207 ~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~ 238 (352) ++|.+ -+-. =|+++.+|+++.++.|+.+. T Consensus 100 lvI~i--SqSG-~T~eti~Al~~ak~~ga~~i 128 (366) T 3knz_A 100 LVVGI--SQGG-GSLSTLAAMERARNVGHITA 128 (366) T ss_dssp EEEEE--ESSS-CCHHHHHHHHHHHHTTCEEE T ss_pred EEEEE--ECCC-CCHHHHHHHHHHHHCCCEEE T ss_conf 89999--2894-98899999999997298378 No 80 >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Probab=32.74 E-value=14 Score=16.62 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=41.7 Q ss_pred CHHHHHHHH-HHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE--EEEECCEEEEEHHHC-CHHHHHHHH Q ss_conf 989999999-99972-9974799972698132498999999999861998128--987434356343433-999999986 Q gi|254781065|r 127 SSKDTEAAL-AYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI--LRFHSRVPIVDPQRI-NPELIQCLK 201 (352) Q Consensus 127 ~~~~~~~~~-~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~--IRi~TR~pv~~P~Ri-t~~L~~~l~ 201 (352) +.+++...+ .++.. -++|..|++|.=-|- -+..+..++.+...++-+.. .+.+-+.-...|+++ .|.++.++. T Consensus 38 ~~de~~~~l~~~~~~~~~~i~~v~isSVvp~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~a 115 (249) T 3bex_A 38 TEDELFSHLHPLLGDAMREIKGIGVASVVPT--QNTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVA 115 (249) T ss_dssp CHHHHHHHHHHHHGGGGGGEEEEEEEESCHH--HHHHHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEEECCC--HHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCHHHHHHHHHHHHHH T ss_conf 8799999999985344543220244354260--68999999985358633884366777615058877747999999999 Q ss_pred ---HCCCCEEEEECCCCHH Q ss_conf ---2599389993369958 Q gi|254781065|r 202 ---EAGKPVYIAIHANHPY 217 (352) Q Consensus 202 ---~~~~~~~iv~H~NHp~ 217 (352) .+++++ +|+.+-++- T Consensus 116 A~~~~~~~~-iVVD~GTA~ 133 (249) T 3bex_A 116 FVKEYGKNG-IIIDMGTAT 133 (249) T ss_dssp HHHHTCSCE-EEEEESSEE T ss_pred HHHHCCCCE-EEEECCCCE T ss_conf 997559818-999748731 No 81 >3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str} Probab=32.65 E-value=23 Score=15.01 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) -.++.++++.++++++|+=|||||. T Consensus 52 ~~eL~~al~~~~~d~~v~~vVltg~ 76 (282) T 3ome_A 52 LDELDAAWTRAAEDNEVKVIILRAN 76 (282) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 9999999999986889179998268 No 82 >2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3 Probab=32.26 E-value=17 Score=16.07 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 89999999999729974799972698 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) -.++..+++.++++ +++=|||||.. T Consensus 53 ~~eL~~al~~~~~d-~~~~vVltg~g 77 (291) T 2fbm_A 53 IKEIVNALNSAAAD-DSKLVLFSAAG 77 (291) T ss_dssp HHHHHHHHHHHHHS-SCSEEEEEECS T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCC T ss_conf 99999999998739-98799997889 No 83 >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Probab=32.19 E-value=24 Score=14.96 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 899999999997299747999726981 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDP 154 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDP 154 (352) ..++.++++.+.++++|+=|||+||.+ T Consensus 29 ~~~l~~~l~~~~~d~~v~~vVl~g~g~ 55 (250) T 2a7k_A 29 ETSVKDALARANADDSVRAVVVYGGAE 55 (250) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTT T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999996399964999982899 No 84 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=32.10 E-value=24 Score=14.95 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=46.6 Q ss_pred CCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHH Q ss_conf 8714520753799972743000001122330125555678989999999999729974799972698-1324-----989 Q gi|254781065|r 87 KGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHK 160 (352) Q Consensus 87 pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~ 160 (352) .|++.+| ++.+-+.......|.|++=+. . +. .+.++..+.+++.|+|.++-...|+ -+++ +.+ T Consensus 48 ~GiI~~~--~~~id~~~lg~~~~a~i~i~~-~--~~------~~~~~~~~~l~~~p~V~~~~~vtG~~D~i~~v~~~~~~ 116 (150) T 2w25_A 48 RGVVQGY--SARINPEAVGHLLSAFVAITP-L--DP------SQPDDAPARLEHIEEVESCYSVAGEASYVLLVRVASAR 116 (150) T ss_dssp TTSEEEE--EEEECTGGGTCCEEEEEEEEE-S--CT------TSCCCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHH T ss_pred CCCCCCC--CCCCCCHHCCCEEEEEEEEEE-C--CC------CCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCHH T ss_conf 8983100--101680114970899999997-1--56------20799999986168472899936998899999989999 Q ss_pred HHHHHHHHHHCCCCCEE Q ss_conf 99999999861998128 Q gi|254781065|r 161 RLQKVLKTLRYIKHVQI 177 (352) Q Consensus 161 ~L~~ll~~L~~i~hv~~ 177 (352) .|..++++|.+++.|++ T Consensus 117 ~l~~~~~~i~~~~gV~~ 133 (150) T 2w25_A 117 ALEDLLQRIRTTANVRT 133 (150) T ss_dssp HHHHHHHHHHHHHTEEE T ss_pred HHHHHHHHHCCCCCEEE T ss_conf 99999998606898779 No 85 >2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str} Probab=32.02 E-value=24 Score=14.94 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEE Q ss_conf 9999999997299747999726981324------989999999-9986199812898 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILR 179 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IR 179 (352) ..++..+-|+++|+|.++-...|+.=.+ +.+.|..++ +.|.++|.|...+ T Consensus 14 ~~~~v~~~l~~~peV~~~~~vtG~~D~~~~v~~~d~~~l~~~v~~~l~~~~gV~~t~ 70 (83) T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTL 70 (83) T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEE T ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999999769473488981189989999999999999999999860698992799 No 86 >1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10 Probab=31.42 E-value=15 Score=16.29 Aligned_cols=11 Identities=0% Similarity=-0.269 Sum_probs=3.7 Q ss_pred CCHHHHHHHHH Q ss_conf 99899999999 Q gi|254781065|r 20 IKKEQIDEIKE 30 (352) Q Consensus 20 Ls~e~~~~~~~ 30 (352) ++++..+.++. T Consensus 27 i~~~~~~ai~~ 37 (275) T 1xvi_A 27 DWQPAAPWLTR 37 (275) T ss_dssp SCCTTHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 79999999999 No 87 >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Probab=31.12 E-value=25 Score=14.84 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) ..++..+++.++++++|+=|||||. T Consensus 45 ~~el~~~l~~~~~d~~v~~vvltg~ 69 (257) T 1szo_A 45 HDELAYCFHDIACDRENKVVILTGT 69 (257) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECB T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999999974999549999668 No 88 >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Probab=30.50 E-value=25 Score=14.77 Aligned_cols=18 Identities=11% Similarity=0.379 Sum_probs=10.5 Q ss_pred HHHHHHHHCCCEEEEEEE Q ss_conf 999999729974799972 Q gi|254781065|r 133 AALAYIQEKSQIWEVIFT 150 (352) Q Consensus 133 ~~~~Yi~~~~eI~eVilS 150 (352) +..+|+++||.|..|.-- T Consensus 209 ~lA~~L~~hp~V~~V~yP 226 (331) T 1pff_A 209 KVAEFLHEHKAVKKVYYP 226 (331) T ss_dssp HHHHHHHHCTTCCCEECT T ss_pred HHHHHHHHCCCEEECCCC T ss_conf 999978758984341168 No 89 >1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10 Probab=30.37 E-value=25 Score=14.75 Aligned_cols=18 Identities=39% Similarity=0.289 Sum_probs=7.1 Q ss_pred HHHHHHHCCCEEEEEEECC Q ss_conf 9999972997479997269 Q gi|254781065|r 134 ALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 134 ~~~Yi~~~~eI~eVilSGG 152 (352) ++..++++ .+.=|+.||- T Consensus 29 ~i~~l~~~-Gi~~~i~TGR 46 (288) T 1nrw_A 29 ALRQAQRD-GIEVVVSTGR 46 (288) T ss_dssp HHHHHHHT-TCEEEEECSS T ss_pred HHHHHHHC-CCEEEEECCC T ss_conf 99999978-9999999799 No 90 >1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Probab=30.35 E-value=25 Score=14.75 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=8.1 Q ss_pred HHHHHHHHHHCCCEE Q ss_conf 999999999879898 Q gi|254781065|r 223 AIAAISRLANAGIIL 237 (352) Q Consensus 223 ~~~A~~~L~~~Gv~v 237 (352) +...+++|++.|+++ T Consensus 118 ~~~i~~~l~~~gi~~ 132 (220) T 1a2z_A 118 VRAITKTLRDNGIPA 132 (220) T ss_dssp HHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCCE T ss_conf 999999998659983 No 91 >1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1 Probab=30.13 E-value=26 Score=14.73 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.1 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHH Q ss_conf 6999999999999879898232798 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVL 243 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVL 243 (352) +|++=.++++.|.+.|+.+..|.|= T Consensus 122 l~~ee~~~l~~l~~~Gv~v~~q~vP 146 (164) T 1nrz_A 122 LDPQDIQAFRELDKLGVKLDLRVVA 146 (164) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST T ss_pred ECHHHHHHHHHHHHCCCEEEEEECC T ss_conf 2899999999999779879999894 No 92 >1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A* Probab=30.04 E-value=26 Score=14.72 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 89999999999986982423011345765210118699999999999982 Q gi|254781065|r 251 PEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 (352) Q Consensus 251 ~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~ 300 (352) ......+.+.|...|+-+--+..-|-..=..+=+++-+.-.++++.++.. T Consensus 322 ~~g~~~v~~~l~~~gi~~~~~~l~DGSGLSr~Nrisp~~l~~lL~~~~~~ 371 (462) T 1w5d_A 322 EKGLEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQ 371 (462) T ss_dssp HHHHHHHHHHGGGGTCCGGGCBCSCSSSCCTTCBBCHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 88999999999972788665277558878755652999999999998859 No 93 >2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A Probab=29.75 E-value=26 Score=14.68 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=38.4 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC------CHHHHHHHH-HHHHCCCCCEEEE Q ss_conf 9999999997299747999726981324------989999999-9986199812898 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIFTGGDPLIL------SHKRLQKVL-KTLRYIKHVQILR 179 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVilSGGDPl~l------~~~~L~~ll-~~L~~i~hv~~IR 179 (352) .+++..+-+++.|+|.++-...|+.=.+ +.+.|..++ ++|.++|.|...+ T Consensus 14 ~~~~v~~~l~~~peV~~v~~vtG~~Dli~~v~~~d~~~l~~~v~~~l~~~~gV~~t~ 70 (83) T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTS 70 (83) T ss_dssp CHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEE T ss_pred CHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999999779997999992389889999998999999999999863599983799 No 94 >3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron} Probab=29.67 E-value=26 Score=14.67 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=10.3 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 9998999999999853 Q gi|254781065|r 19 LIKKEQIDEIKEISNH 34 (352) Q Consensus 19 ~Ls~e~~~~~~~~~~~ 34 (352) .++++.++.+.++.+. T Consensus 22 ~i~~~~~~al~~l~~~ 37 (279) T 3niw_A 22 EISSRNRETLIRIQEQ 37 (279) T ss_dssp CCCHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHC T ss_conf 3399999999999978 No 95 >2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A* Probab=29.52 E-value=26 Score=14.66 Aligned_cols=38 Identities=5% Similarity=-0.065 Sum_probs=23.9 Q ss_pred HHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 98698242301134576521011869999999999998 Q gi|254781065|r 262 VELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKE 299 (352) Q Consensus 262 ~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~ 299 (352) ...|+.+--+...|-..-...=+++-+.-.++...+.. T Consensus 323 ~~~g~~~~~~~~~dgSGLSr~n~~t~~~~~~~L~~~~~ 360 (458) T 2ex2_A 323 QQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQ 360 (458) T ss_dssp HTSCCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHH T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 86088865524304788765565599999999999884 No 96 >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Probab=29.33 E-value=26 Score=14.63 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 89999999999729974799972698132 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLI 156 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~ 156 (352) .+++.++++.+.++++|+=|||+|..+.. T Consensus 39 ~~~l~~~l~~~~~d~~v~~vvl~g~g~~f 67 (263) T 3moy_A 39 EAEVLDAARDFDADLEIGAIVVTGSERAF 67 (263) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCSSEE T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCC T ss_conf 99999999987328981699986785454 No 97 >3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, csgid, cytoplasm, hydrolase, protease, thiol protease; 2.00A {Bacillus anthracis} Probab=29.32 E-value=26 Score=14.63 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=4.1 Q ss_pred HHHHHHHHHC Q ss_conf 9999999861 Q gi|254781065|r 162 LQKVLKTLRY 171 (352) Q Consensus 162 L~~ll~~L~~ 171 (352) ++.+++++.+ T Consensus 118 ~~~i~~~l~~ 127 (215) T 3lac_A 118 MKAIVKKLQE 127 (215) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999885 No 98 >1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Probab=29.28 E-value=26 Score=14.63 Aligned_cols=39 Identities=21% Similarity=0.527 Sum_probs=34.0 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 999999729974799972698132498999999999861 Q gi|254781065|r 133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 133 ~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) .....|++.+.|...+-+||.|.-+++.-...++....+ T Consensus 148 ~~~~~Ir~t~GV~~fVg~g~~P~pl~~~EI~~il~~~~~ 186 (248) T 1m1h_A 148 KLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKR 186 (248) T ss_dssp HHHHHHHTSTTEEEECEETTEECEECHHHHHHHHHHTTC T ss_pred HHHHHHHCCCCEEEEEECCCEEEECCHHHHHHHHHHHHC T ss_conf 168887367424775206981014599999999987654 No 99 >2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} Probab=29.27 E-value=26 Score=14.63 Aligned_cols=102 Identities=9% Similarity=0.148 Sum_probs=56.1 Q ss_pred EEEECCCCCCCCH---------HHHHHHHHHHHC-----CCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEEC Q ss_conf 9972698132498---------999999999861-----99812898743435634343399999998625993899933 Q gi|254781065|r 147 VIFTGGDPLILSH---------KRLQKVLKTLRY-----IKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIH 212 (352) Q Consensus 147 VilSGGDPl~l~~---------~~L~~ll~~L~~-----i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H 212 (352) +|++.|+|+.... ..+...+..|.. -..++.+.++...-. +.-+++...++++-.+ T Consensus 23 lLF~s~epvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~l~~~~ggy~l----~t~~~~~~~v~~~~~~------ 92 (219) T 2z99_A 23 LLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRM----YTRARFAPYVEKLLLD------ 92 (219) T ss_dssp HHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEE----EECGGGHHHHHHHHHH------ T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEE----EECHHHHHHHHHHHCC------ T ss_conf 999717997999999883898899999999999987426663589996895899----9575661689998246------ Q ss_pred CCCHHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 699588699999999999987989823279862345788999999999 Q gi|254781065|r 213 ANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 213 ~NHp~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) .-+..|+..+.+.+.-+.-.+-.-..+-.-+||||-+ .++..|..+ T Consensus 93 -~~~~~LS~aalETLAIIAY~QPiTr~eIe~IRGV~s~-~~l~~L~er 138 (219) T 2z99_A 93 -GARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNVD-AVMRTLLAR 138 (219) T ss_dssp -HHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCCH-HHHHHHHHT T ss_pred -CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH-HHHHHHHHC T ss_conf -7667678999999999997398479999987397767-899999987 No 100 >1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2 Probab=29.26 E-value=12 Score=17.04 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=48.1 Q ss_pred CCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 71452075379997274300000112233012555567898999999999972997479997269813249899999999 Q gi|254781065|r 88 GIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK 167 (352) Q Consensus 88 gl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~ 167 (352) .|--|+..-+-+ .-..+..|.||.+.|.... .....+++++.+++. +. ++-||-|-+....+-.+.++ T Consensus 62 ~Ld~KtKeLI~l--a~s~a~~c~~ci~~H~~~A-~~~G~t~eEI~Eal~-va--------~~~gG~~~~~~~~~A~e~~e 129 (145) T 1p8c_A 62 KLDVKTKELMGL--VASTVLRCDDCIRYHLVRC-VQEGASDEEIFEALD-IA--------LVVGGSIVIPHLRRAVGFLE 129 (145) T ss_dssp SSCHHHHHHHHH--HHHHHTTCHHHHHHHHHHH-HTTSCCHHHHHHHHH-HH--------HHHHCGGGHHHHHHHHHHHH T ss_pred CCCHHHHHHHHH--HHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHH-HH--------HHHCCCHHHHHHHHHHHHHH T ss_conf 999999999999--9999939999999999999-883999999999999-99--------99855257989999999999 Q ss_pred HHHCCC-CCEEEEEEC Q ss_conf 986199-812898743 Q gi|254781065|r 168 TLRYIK-HVQILRFHS 182 (352) Q Consensus 168 ~L~~i~-hv~~IRi~T 182 (352) .|.+.. .-+++-||| T Consensus 130 el~e~~k~Ge~v~~g~ 145 (145) T 1p8c_A 130 ELREMEKNGETISLGS 145 (145) T ss_dssp HHHTTSTTCCCCC--- T ss_pred HHHHHHCCCCCCCCCC T ss_conf 9999872688424779 No 101 >1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.49.1.2 Probab=29.21 E-value=27 Score=14.62 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=31.8 Q ss_pred CCEEEEECCCC-----HHHCCHHHHHHHHHHHHCCCEEEECHHHHHCCC Q ss_conf 93899933699-----588699999999999987989823279862345 Q gi|254781065|r 205 KPVYIAIHANH-----PYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248 (352) Q Consensus 205 ~~~~iv~H~NH-----p~Elt~~~~~A~~~L~~~Gv~v~nQsVLLkgVN 248 (352) ..+++|||-+- .+|+++|. .+.|.+.|+.|+.+|=+|.|+- T Consensus 74 ~~lVvVTh~~GF~~pg~~e~~~e~---~~~L~~~Gv~V~t~tH~lSG~e 119 (206) T 1t57_A 74 GNIVSVTHHAGFREKGQLELEDEA---RDALLERGVNVYAGSHALSGVG 119 (206) T ss_dssp SEEEEECCCTTSSSTTCCSSCHHH---HHHHHHHTCEEECCSCTTTTHH T ss_pred CCEEEEECCCCCCCCCCCCCCHHH---HHHHHHCCCEEEEECCCCCCCH T ss_conf 979999064688999834279999---9999977988999503034413 No 102 >1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.108.1.10 Probab=28.88 E-value=26 Score=14.70 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=9.8 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 9998999999999853 Q gi|254781065|r 19 LIKKEQIDEIKEISNH 34 (352) Q Consensus 19 ~Ls~e~~~~~~~~~~~ 34 (352) .++++..+.++++.+. T Consensus 20 ~i~~~~~~al~~l~~~ 35 (231) T 1wr8_A 20 MIHEKALEAIRRAESL 35 (231) T ss_dssp CBCHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHC T ss_conf 3299999999999977 No 103 >1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Probab=28.64 E-value=27 Score=14.56 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.9 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 799972698132498999999999861 Q gi|254781065|r 145 WEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 145 ~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) +-|+|++|||+..+. ...++.++.+ T Consensus 85 ~Vv~L~~GDP~i~~t--~~~l~~~~~~ 109 (294) T 1wde_A 85 VVAVVTAGDPMVATT--HSSLAAEALE 109 (294) T ss_dssp EEEEEESBCTTSSSS--HHHHHHHHHH T ss_pred CEEEEECCCCCCCCC--HHHHHHHHHH T ss_conf 879996799987671--8999999998 No 104 >2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Probab=28.34 E-value=27 Score=14.52 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC Q ss_conf 9999999999729974799972698132498999999999861 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY 171 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~ 171 (352) ...+...+++++.. +=+++++|||+..+. ..+++..+.+ T Consensus 84 ~~~~~i~~~~~~g~--~V~~l~~GDP~~~~~--~~~l~~~~~~ 122 (259) T 2e0n_A 84 ANYASMAEEVQAGR--RVAVVSVGDGGFYST--ASAIIERARR 122 (259) T ss_dssp GGHHHHHHHHHTTC--EEEEEESBCTTBSCT--HHHHHHHHHT T ss_pred HHHHHHHHHHHCCC--CEEEEECCCCCCCCH--HHHHHHHHCC T ss_conf 99999999986799--489990687544463--9999777426 No 105 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=27.38 E-value=28 Score=14.41 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHH-HHHHCCCCCEEEEEE Q ss_conf 999999999972997479997-26981324-----989999999-998619981289874 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVL-KTLRYIKHVQILRFH 181 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll-~~L~~i~hv~~IRi~ 181 (352) ++.++.++.++++|+|.++-. ||..-+++ +.+.+..++ +.+.++|+|..++-. T Consensus 80 ~~~~~~~~~l~~~~~V~~~~~vtG~~dl~~~v~~~~~~~l~~~~~~~i~~~~gV~~~~t~ 139 (152) T 2cg4_A 80 KDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETL 139 (152) T ss_dssp GGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEEE T ss_pred HHHHHHHHHHHCCCHHEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 239999999861834316776058976999999899999999999985269998589999 No 106 >2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CBIE); beta, alpha-beta-alpha sandwich, structural genomics, PSI; HET: SAH; 2.27A {Archaeoglobus fulgidus dsm 4304} SCOP: c.90.1.1 Probab=27.27 E-value=16 Score=16.18 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH Q ss_conf 99999999997299747999726981324989 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGDPLILSHK 160 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~ 160 (352) +++.+.++-.+ .. +=|+|++|||+..+.. T Consensus 77 ~~~~~~~~~~~-g~--~VvvL~sGDP~iyg~~ 105 (221) T 2bb3_A 77 DEIRRIMEEGR-ER--EVAVISTGDPMVAGLG 105 (221) T ss_dssp HHHHHHHHHHH-HS--CEEEEESBCTTTTTSH T ss_pred HHHHHHHHHCC-CC--CEEEEECCCCCCCCHH T ss_conf 99999999808-99--5899965896646459 No 107 >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Probab=27.09 E-value=29 Score=14.37 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=79.9 Q ss_pred HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHH--CCCCE Q ss_conf 9999999972-99747999726981324989999999998619981289874343563434339999999862--59938 Q gi|254781065|r 131 TEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE--AGKPV 207 (352) Q Consensus 131 ~~~~~~Yi~~-~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~--~~~~~ 207 (352) ..++++++.+ .-.+..++=.||||..-.+ ..++|+.+.+-|+.+.|=+---. .-.++| ++++.+++ ..||+ T Consensus 181 ~~ei~~~~~~~g~G~S~~VsiGnd~~~g~~--~~D~L~~~~~Dp~Tk~Ivly~E~-~g~~e~---~~a~~~k~~~~~KPV 254 (334) T 3mwd_B 181 SNELNNIISRTTDGVYEGVAIGGDRYPGST--FMDHVLRYQDTPGVKMIVVLGEI-GGTEEY---KICRGIKEGRLTKPI 254 (334) T ss_dssp HHHHHHHHHHHSSCEEEEEECCSSSSCSSC--HHHHHHHHHTCTTCCEEEEEEES-SSSHHH---HHHHHHHTTSCCSCE T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCC--HHHHHHHHCCCCCCCEEEEECCC-CCCHHH---HHHHHHHHCCCCCCE T ss_conf 999999999829987589805888756874--99999986449998499998454-783799---999999855899988 Q ss_pred EEEE-C-----------CCCHHHCC----HHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCE Q ss_conf 9993-3-----------69958869----99999999999879898232798623457889999999999986982 Q gi|254781065|r 208 YIAI-H-----------ANHPYEFS----EEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIK 267 (352) Q Consensus 208 ~iv~-H-----------~NHp~Elt----~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~ 267 (352) ++.. - +-|.--+. ..+..-...|+++|+.+- +...|=.+++++++++|+..|+. T Consensus 255 Va~kaGrsa~~~~~~~~mgHtGAia~~~~gsa~~k~~al~~aGv~vv------~~~~el~~~l~~~~~~l~~~G~i 324 (334) T 3mwd_B 255 VCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP------RSFDELGEIIQSVYEDLVANGVI 324 (334) T ss_dssp EEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCC------SSGGGHHHHHHHHHHHHHHTTSC T ss_pred EEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEC------CCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99997326777885555535312036898899999999998799687------99999999999999988657865 No 108 >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} Probab=26.89 E-value=29 Score=14.35 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CC Q ss_conf 899999999997299747999726-98 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG-GD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD 153 (352) -.++.++++.+.++++|+=|||+| |+ T Consensus 71 ~~~l~~~l~~~~~d~~v~~vVl~g~G~ 97 (407) T 3ju1_A 71 VRAMTVQLNLWKKDPLIACVVLDGSGE 97 (407) T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEESSS T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 999999999997498957999980799 No 109 >3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Probab=26.72 E-value=9.5 Score=17.76 Aligned_cols=20 Identities=40% Similarity=0.909 Sum_probs=15.4 Q ss_pred CCCCEEECCCEEEEEECCCCCCHHHCCCCCC Q ss_conf 8871452075379997274300000112233 Q gi|254781065|r 86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE 116 (352) Q Consensus 86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~ 116 (352) -.||++||- -.-||-|||.. T Consensus 23 ~~glIrKYg-----------L~~CRqCFre~ 42 (50) T 3jyv_N 23 HTGLVRKYD-----------LNICRQCFREK 42 (50) T ss_dssp CSSCCSSCS-----------CSSSSHHHHHH T ss_pred CCCEEEECC-----------CCHHHHHHHHH T ss_conf 845531227-----------63067799998 No 110 >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Probab=26.48 E-value=17 Score=16.04 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 8999999999972997479997269 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) -+++..+++.++++ +++=|||||. T Consensus 35 ~~el~~al~~~~~d-~~~~vVl~g~ 58 (261) T 2gtr_A 35 MREVQSALSTAAAD-DSKLVLLSAV 58 (261) T ss_dssp HHHHHHHHHHHHHS-SCSCEEEEES T ss_pred HHHHHHHHHHHHCC-CCEEEEEECC T ss_conf 99999999998629-9769999789 No 111 >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Probab=26.47 E-value=25 Score=14.83 Aligned_cols=73 Identities=21% Similarity=0.141 Sum_probs=34.8 Q ss_pred CHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEE Q ss_conf 0000112233012555567898999999999972997479997269813249899999999986199812898743435 Q gi|254781065|r 107 VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP 185 (352) Q Consensus 107 ~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~p 185 (352) ++|+=|||-.+-+.......+.+++.+.+.-+.....+==-++.-=||-.--+..|.+++. .-..|=+.+|.= T Consensus 37 ~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~i~~~~~~Vl~VvD~~d~~~S~~~~l~~~~~------~k~iilV~NK~D 109 (369) T 3ec1_A 37 VICQRCFRLKHYNEVQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA------DNPILLVGNKAD 109 (369) T ss_dssp ----------------------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT------TSCEEEEEECGG T ss_pred EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHC------CCCEEEEEECCC T ss_conf 7856464666448466677998999999997523586699998778877450677999867------998899998832 No 112 >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Probab=26.45 E-value=30 Score=14.29 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.2 Q ss_pred CEEECCCEEEEEECC Q ss_conf 145207537999727 Q gi|254781065|r 89 IVHRYPDRILLKLLH 103 (352) Q Consensus 89 l~hkY~~rvLl~~t~ 103 (352) ++.+|.=++-|++++ T Consensus 62 ~L~~~~ikATFFv~G 76 (254) T 2iw0_A 62 ILKQNDVRATFFVNG 76 (254) T ss_dssp HHHHHTCCCEEEECS T ss_pred HHHHCCCCEEEEEEC T ss_conf 999779938999968 No 113 >2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} Probab=25.92 E-value=30 Score=14.23 Aligned_cols=53 Identities=21% Similarity=0.173 Sum_probs=36.7 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHH-HHCCCCCEEEE Q ss_conf 98999999999972997479997-26981324-----98999999999-86199812898 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKT-LRYIKHVQILR 179 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~-L~~i~hv~~IR 179 (352) +.+...+..++++++|+|.++.. ||+--+++ +...+..++.+ |.+++.|..+. T Consensus 85 ~~~~~~~~~~~l~~~~~V~~~~~~tG~~dl~~~v~~~~~~~l~~~i~~~l~~~~gv~~~~ 144 (163) T 2gqq_A 85 APDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTR 144 (163) T ss_dssp STTHHHHHHHHHSSCTTEEEEEEESSSSSEEEEEECSSHHHHHHHTTTSSTTSSSCSEEE T ss_pred CCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 604567777752489777999996489849999998999999999999875389984999 No 114 >3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} Probab=25.71 E-value=30 Score=14.20 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.0 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHH Q ss_conf 699999999999987989823279 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSV 242 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsV 242 (352) +|++=.+|++.|.+.|+.+.-|.| T Consensus 127 l~~ee~~~lk~l~~~Gv~v~~Q~v 150 (168) T 3eye_A 127 VDDQDLTDLRFIKQRGVNVFIQDV 150 (168) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSS T ss_pred ECHHHHHHHHHHHHCCCEEEEEEC T ss_conf 199999999999977987999989 No 115 >1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A Probab=25.71 E-value=30 Score=14.20 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=29.2 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHH Q ss_conf 699999999999987989823279862345788999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRT 260 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~ 260 (352) ++++=.++++.|.+.|+.+..|.+= +|....+.++.++ T Consensus 125 l~~ee~~~lk~l~~~Gv~v~~Q~vP----~d~~~~~~~~~kk 162 (165) T 1vsq_C 125 VDEKDIEAFKKLNARGIELEVRKVS----TDPKLKMMDLISK 162 (165) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHT T ss_pred ECHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHH T ss_conf 0899999999999779879999895----9971579999987 No 116 >2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A* Probab=25.62 E-value=16 Score=16.21 Aligned_cols=77 Identities=21% Similarity=0.052 Sum_probs=51.9 Q ss_pred HHHHHHHHHHHHCCCEEEECHHHH----HCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 999999999998798982327986----2345788999999999998698242301134576521011869999999999 Q gi|254781065|r 221 EEAIAAISRLANAGIILLSQSVLL----KGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVAS 296 (352) Q Consensus 221 ~~~~~A~~~L~~~Gv~v~nQsVLL----kgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~ 296 (352) ..+.+|++.|+++|..+..=.|++ .|.+++.+.+....+.+-+.||.=|.|+-.+.+-...+=+++.++...|.+. T Consensus 139 ~S~~eai~~l~~~G~~V~~~~vivDR~e~g~~~~~~~~~a~~~~~~~~gi~v~Sl~~l~~li~~~~~~i~~e~~~~i~~y 218 (226) T 2ps1_A 139 TAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQTVSKKYGIPVLSIVSLIHIITYLEGRITAEEKSKIEQY 218 (226) T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECCBBSCTTCSSCCBHHHHHHHHHTCCEEEEEEHHHHHHHHGGGCCSSHHHHHHHH T ss_pred CCHHHHHHHHHHCCCEEEEEEEEEECHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 45899999999879989999999971120455542210179999986498199973499999998657999999999999 Q ss_pred H Q ss_conf 9 Q gi|254781065|r 297 L 297 (352) Q Consensus 297 l 297 (352) + T Consensus 219 ~ 219 (226) T 2ps1_A 219 L 219 (226) T ss_dssp H T ss_pred H T ss_conf 9 No 117 >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} Probab=24.99 E-value=31 Score=14.11 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 999999999972997479997269 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGG 152 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGG 152 (352) .++.++++.+.++++|+=|||+|| T Consensus 38 ~~l~~~l~~~~~d~~vr~vil~g~ 61 (265) T 2ppy_A 38 KEFNAAIDDIRFDPDIKVVIVMSD 61 (265) T ss_dssp HHHHHHHHHHHTCTTCCEEEEEEC T ss_pred HHHHHHHHHHHHCCCCEEEEEECC T ss_conf 999999999984999659999617 No 118 >1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10 Probab=24.71 E-value=32 Score=14.08 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=18.8 Q ss_pred HHHHHHHHHHC--CCCCEEEEEECCEEEEEHHHCCH Q ss_conf 99999999861--99812898743435634343399 Q gi|254781065|r 161 RLQKVLKTLRY--IKHVQILRFHSRVPIVDPQRINP 194 (352) Q Consensus 161 ~L~~ll~~L~~--i~hv~~IRi~TR~pv~~P~Rit~ 194 (352) .+..++..|.+ -+++..++-+....-+.|..++. T Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~~~~~idi~~~~~sK 199 (282) T 1rkq_A 164 ILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNK 199 (282) T ss_dssp HHHHHHHHSCHHHHHHEEEEEEETTEEEEEETTCSH T ss_pred HHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCCH T ss_conf 689999999876156548998546078964899626 No 119 >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3 Probab=24.43 E-value=32 Score=14.04 Aligned_cols=24 Identities=8% Similarity=0.208 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 899999999997299747999726 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG 151 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG 151 (352) ..++..+++.+.++++|+=||||| T Consensus 39 ~~el~~~l~~~~~d~~vr~vvl~g 62 (264) T 1wz8_A 39 HRGLARVWRDLEAVEGVRAVLLRG 62 (264) T ss_dssp HHHHHHHHHHHTTCTTCSEEEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 999999999986689986999978 No 120 >1aug_A Pyroglutamyl peptidase-1; cysteine proteinase, hydrolase, thiol protease; 2.00A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 Probab=24.40 E-value=32 Score=14.04 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=4.0 Q ss_pred HHHHHHHHCCC Q ss_conf 99999998798 Q gi|254781065|r 225 AAISRLANAGI 235 (352) Q Consensus 225 ~A~~~L~~~Gv 235 (352) +.++++.+.|+ T Consensus 121 ~l~~~l~~~g~ 131 (215) T 1aug_A 121 RIVEEIKKEGI 131 (215) T ss_dssp HHHHHHHHTTC T ss_pred HHHHHHHHCCC T ss_conf 99998886699 No 121 >3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Probab=24.32 E-value=13 Score=16.73 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=55.0 Q ss_pred HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCC--CCEEEEECCCCHHHCCHHHHHHH----HHHHHCCCEEEECHHH Q ss_conf 61998128987434356343433999999986259--93899933699588699999999----9999879898232798 Q gi|254781065|r 170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAG--KPVYIAIHANHPYEFSEEAIAAI----SRLANAGIILLSQSVL 243 (352) Q Consensus 170 ~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~--~~~~iv~H~NHp~Elt~~~~~A~----~~L~~~Gv~v~nQsVL 243 (352) .++|.|.++|+..-.--..=+++-+.+.+.....+ ..-+++.-+..-+.++.-+.+++ +.+++.|+.++ T Consensus 26 ~~~p~v~I~r~~g~L~F~na~~~~~~i~~~~~~~~~~~~k~vVld~~~v~~iD~tg~~~L~~l~~~l~~~gi~l~----- 100 (143) T 3llo_A 26 KEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVY----- 100 (143) T ss_dssp BCCTTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEE----- T ss_pred CCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE----- T ss_conf 256999999848985771228888887666420257982599999668985887999999999999997799999----- Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH Q ss_conf 6234578899999999999869824230113457652101186999999 Q gi|254781065|r 244 LKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQK 292 (352) Q Consensus 244 LkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~ 292 (352) +.|++.+. + +.|.+.|. .+...+..+|-.++++|.. T Consensus 101 la~~~~~v--~----~~l~~~g~-------~~~~~~~~~~F~sv~dAV~ 136 (143) T 3llo_A 101 LAGCSAQV--V----NDLTSNRF-------FENPALKELLFHSIHDAVL 136 (143) T ss_dssp EESCCHHH--H----HHHHHTTT-------TSSGGGGGGEESSHHHHHH T ss_pred EEECCHHH--H----HHHHHCCC-------HHHCCCCCEEECCHHHHHH T ss_conf 98098799--9----99998799-------1214765535899999999 No 122 >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* Probab=24.29 E-value=32 Score=14.02 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=49.8 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH---HHHHHHHHHCCCCCEEEEEEC-CEEEEEHHHCCH-HHHHHHH Q ss_conf 98999999999972997479997269813249899---999999986199812898743-435634343399-9999986 Q gi|254781065|r 127 SSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKR---LQKVLKTLRYIKHVQILRFHS-RVPIVDPQRINP-ELIQCLK 201 (352) Q Consensus 127 ~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~---L~~ll~~L~~i~hv~~IRi~T-R~pv~~P~Rit~-~L~~~l~ 201 (352) ++.+++..+.-..+ -.|++|+.=+|||-.-.+.. =.+++.-++.... ..|+. =.|-..|+.-+. .-++.|+ T Consensus 95 ~~~~l~~~L~~~~~-~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~---~~igva~yPe~hp~~~~~~~d~~~lk 170 (304) T 3fst_A 95 TPDELRTIARDYWN-NGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVAD---FDISVAAYPEVHPEAKSAQADLLNLK 170 (304) T ss_dssp CHHHHHHHHHHHHH-TTCCEEEEECCCCC------CCCHHHHHHHHHHHCC---CEEEEEECTTCCTTCSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCEECCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999998-397707661688888889876008999999986167---88735117877865215777799999 Q ss_pred H---CCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCE Q ss_conf 2---5993899933699588699999999999987989 Q gi|254781065|r 202 E---AGKPVYIAIHANHPYEFSEEAIAAISRLANAGII 236 (352) Q Consensus 202 ~---~~~~~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~ 236 (352) + .|- -+++|++--=.| ...+-+++++++|+. T Consensus 171 ~Kv~aGA-~fiiTQ~~FD~~---~~~~~~~~~~~~Gi~ 204 (304) T 3fst_A 171 RKVDAGA-NRAITQFFFDVE---SYLRFRDRCVSAGID 204 (304) T ss_dssp HHHHHTC-CEEEECCCSCHH---HHHHHHHHHHHTTCC T ss_pred HHHHCCC-CEEEEHHEECHH---HHHHHHHHHHHCCCC T ss_conf 9997276-607410100499---999999999976997 No 123 >3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} Probab=24.12 E-value=32 Score=14.00 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=30.0 Q ss_pred HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCEEEEEHHHCCH Q ss_conf 999729974799972698132498999999999861-99812898743435634343399 Q gi|254781065|r 136 AYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY-IKHVQILRFHSRVPIVDPQRINP 194 (352) Q Consensus 136 ~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~-i~hv~~IRi~TR~pv~~P~Rit~ 194 (352) +.+..++....++....++ +.+..+.+.+.+ .+++...+.+....-+.|..++. T Consensus 149 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~ldi~p~~~sK 203 (290) T 3dnp_A 149 DLLMDEPVSAPVIEVYTEH-----DIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSK 203 (290) T ss_dssp HHHHHSCCCCSEEEEECCG-----GGHHHHHHHHHHHCTTEEEEEEETTEEEEEETTCCH T ss_pred HHHHCCCCCCEEEEECCCH-----HHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCHH T ss_conf 8851144331489971737-----799999999998679779999858457861685245 No 124 >1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1 Probab=23.84 E-value=33 Score=13.96 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=30.3 Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHH Q ss_conf 6999999999999879898232798623457889999999999 Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTF 261 (352) Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L 261 (352) ++++=.++++.|.+.|+.+.-|.+= +|....+.++.+++ T Consensus 123 l~~ee~~~l~~l~~~Gv~v~~q~vP----~d~~~~~~~~lkk~ 161 (163) T 1ble_A 123 VTEQDIKAFETLSDKGVKLELRQLP----SDASEDFVQILRNV 161 (163) T ss_dssp ECHHHHHHHHHHHHTTCEEEECSST----TSCCEEHHHHHHTT T ss_pred ECHHHHHHHHHHHHCCCEEEEEECC----CCCCCCHHHHHHHH T ss_conf 2899999999999769879999894----99610699999753 No 125 >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Probab=23.75 E-value=33 Score=13.95 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH Q ss_conf 899999999997299747999726981324989999999 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVL 166 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll 166 (352) -.++.++++.+.++++++=|||||....--+-..|.++. T Consensus 41 ~~~l~~~l~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~ 79 (258) T 3lao_A 41 LADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELA 79 (258) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHG T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHC T ss_conf 999999999997399965999977998661587466525 No 126 >1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 Probab=23.55 E-value=33 Score=13.93 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=20.6 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHC--CHHHHHHHHHHHHCCCEE Q ss_conf 99999986259938999336995886--999999999999879898 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHPYEF--SEEAIAAISRLANAGIIL 237 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp~El--t~~~~~A~~~L~~~Gv~v 237 (352) ..+...|++.+-++.++.-|+|=-=+ .....+|+..|+++|-.+ T Consensus 80 a~is~~LA~agIsif~iSty~tD~ilV~~~~~~~A~~~L~~~G~~v 125 (134) T 1zhv_A 80 LSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHSL 125 (134) T ss_dssp HHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHCCCCEEEEEEECCCEEEEEHHHHHHHHHHHHHCCCEE T ss_conf 9998999877996599875417479988789999999999889999 No 127 >2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N Probab=23.52 E-value=10 Score=17.51 Aligned_cols=20 Identities=35% Similarity=0.855 Sum_probs=15.5 Q ss_pred CCCCEEECCCEEEEEECCCCCCHHHCCCCCC Q ss_conf 8871452075379997274300000112233 Q gi|254781065|r 86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRRE 116 (352) Q Consensus 86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~ 116 (352) -.||++||- -.-||-|||.. T Consensus 27 ~~glIrKYg-----------L~~CRqCFre~ 46 (56) T 2zkq_n 27 RHGLIRKYG-----------LNMCRQCFRQY 46 (56) T ss_dssp STTCCTTTC-----------CCSCHHHHHHT T ss_pred CCCEEEEEC-----------CCHHHHHHHHH T ss_conf 743110017-----------32288899988 No 128 >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Probab=23.52 E-value=33 Score=13.92 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=24.4 Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHC-CHHHHHHHHHHHHCCCEEEE Q ss_conf 99999986259938999336995886-99999999999987989823 Q gi|254781065|r 194 PELIQCLKEAGKPVYIAIHANHPYEF-SEEAIAAISRLANAGIILLS 239 (352) Q Consensus 194 ~~L~~~l~~~~~~~~iv~H~NHp~El-t~~~~~A~~~L~~~Gv~v~n 239 (352) .++++.|+++. .|.+.+..-.--.. .++.++++++|.++|+.|.- T Consensus 99 ~~va~FL~~~~-~v~L~If~sRLY~~~~~~~q~GLr~L~~aG~~v~i 144 (190) T 2nyt_A 99 DRIIKTLSKTK-NLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRI 144 (190) T ss_dssp HHHHHHHHHCT-TEEEEEEEEECSSTTSHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHCC-CEEEEEEHHHHHHHCCHHHHHHHHHHHHCCCCEEE T ss_conf 99999998789-90799886351352687799999999987996896 No 129 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=23.51 E-value=33 Score=13.92 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=59.6 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHH---HHCCCCE Q ss_conf 9999999972997479997269813249899999999986199812898743435634343399999998---6259938 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCL---KEAGKPV 207 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l---~~~~~~~ 207 (352) +++++.-.++..+=-|||+|.| .+ ..+|.+--.|| |-.|.+.. .++++.| ++++.++ T Consensus 38 l~~~~~iA~~l~~~~DVIISRG-----gT---a~~Ir~~~~iP-VVeI~vs~-----------~Dil~al~~a~~~~~ki 97 (196) T 2q5c_A 38 LTRASKIAFGLQDEVDAIISRG-----AT---SDYIKKSVSIP-SISIKVTR-----------FDTMRAVYNAKRFGNEL 97 (196) T ss_dssp HHHHHHHHHHHTTTCSEEEEEH-----HH---HHHHHTTCSSC-EEEECCCH-----------HHHHHHHHHHGGGCSEE T ss_pred HHHHHHHHHHHHCCCCEEEECC-----HH---HHHHHHHCCCC-EEEECCCH-----------HHHHHHHHHHHHHCCCE T ss_conf 9999999997543987999896-----58---99999828997-79980788-----------79999999999758978 Q ss_pred EEEECCCCHHHC------------------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 999336995886------------------99999999999987989823279862345788999999999998698242 Q gi|254781065|r 208 YIAIHANHPYEF------------------SEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPY 269 (352) Q Consensus 208 ~iv~H~NHp~El------------------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PY 269 (352) .++.+-|-..++ ..++.++++.+++.|+.+.-=..+. ++.--+.|+..+ T Consensus 98 avvgf~~~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~-------------~~~A~~~Gl~~i 164 (196) T 2q5c_A 98 ALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTV-------------TDEAIKQGLYGE 164 (196) T ss_dssp EEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHH-------------HHHHHHTTCEEE T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHH-------------HHHHHHCCCCEE T ss_conf 9996785015899999985995599996688999999999998699899998799-------------999998599789 Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 30113457652101186999999999 Q gi|254781065|r 270 YLHHPDLAAGTSHFRLTIEEGQKIVA 295 (352) Q Consensus 270 Yl~~~d~v~G~~hf~v~~~~~~~i~~ 295 (352) -+.- |..-.+--+++|.++.+ T Consensus 165 li~S-----g~eSI~~Al~eA~~l~~ 185 (196) T 2q5c_A 165 TINS-----GEESLRRAIEEALNLIE 185 (196) T ss_dssp ECCC-----CHHHHHHHHHHHHHHHH T ss_pred EEEC-----CHHHHHHHHHHHHHHHH T ss_conf 9965-----49999999999999999 No 130 >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 Probab=23.44 E-value=33 Score=13.91 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=65.3 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHC--CHHHHHHHHHHHHCC---C Q ss_conf 99999999861998128987434356343433999999986259938999336995886--999999999999879---8 Q gi|254781065|r 161 RLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF--SEEAIAAISRLANAG---I 235 (352) Q Consensus 161 ~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~El--t~~~~~A~~~L~~~G---v 235 (352) .++..++.-.++. .+.|+++.-. .-...-..++++..++++. -+..| ||+... +.+...++..+.+.+ + T Consensus 85 ~~~~~l~~A~~lG-a~~v~~~~g~--~~~~~~l~~l~~~a~~~Gv--~l~lE-nh~~~~~~~~~~~~~~~~~~~~~~~~v 158 (264) T 1yx1_A 85 ELEPTLRRAEACG-AGWLKVSLGL--LPEQPDLAALGRRLARHGL--QLLVE-NDQTPQGGRIEVLERFFRLAERQQLDL 158 (264) T ss_dssp THHHHHHHHHHTT-CSEEEEEEEC--CCSSCCHHHHHHHHTTSSC--EEEEE-CCSSHHHHCHHHHHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHHCC-CCEEEECCCC--CCCHHHHHHHHHHHHHCCC--EEEEE-CCCCCCCCCHHHHHHHHHHHHCCCCCE T ss_conf 9999999999859-7989989888--4101139999999997398--89996-589846687889999999865269854 Q ss_pred EEEE--CHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 9823--2798623457889999999999986982423011345765210118---6999999999999828886541066 Q gi|254781065|r 236 ILLS--QSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL---TIEEGQKIVASLKEKISGLCQPFYI 310 (352) Q Consensus 236 ~v~n--QsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v---~~~~~~~i~~~l~~~lsG~~~P~~v 310 (352) .+.- =-....| .|+... .+.+ +=+=.|+|..|-..+...-.+ +...++.=+.++-+.+ |+..| +. T Consensus 159 g~~~D~~h~~~~g--~dp~~~---~~~l---~~~i~~vHvKD~~~~~~~~~~~~g~g~~~~~~~~~~L~~~-~~d~~-~~ 228 (264) T 1yx1_A 159 AMTFDIGNWRWQE--QAADEA---ALRL---GRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHF-PEGVA-RA 228 (264) T ss_dssp EEEEETTGGGGGT--CCHHHH---HHHH---GGGEEEEEECEEEECTTSCEEEECCCHHHHHHHHHHHTTS-CTTCE-EE T ss_pred EECCCCHHHHHCC--CCHHHH---HHHH---CCCEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHC-CCCCE-EE T ss_conf 0046738888418--888999---9972---6847999956577788884525899999999999999847-99973-99 Q ss_pred EECCC Q ss_conf 31788 Q gi|254781065|r 311 LDLPG 315 (352) Q Consensus 311 ~d~p~ 315 (352) +|.|. T Consensus 229 lE~p~ 233 (264) T 1yx1_A 229 IEYPL 233 (264) T ss_dssp ECSCC T ss_pred EEECC T ss_conf 98258 No 131 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Probab=23.27 E-value=34 Score=13.89 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----CHHHHHHHHHHHHC Q ss_conf 99999999972997479997-26981324-----98999999999861 Q gi|254781065|r 130 DTEAALAYIQEKSQIWEVIF-TGGDPLIL-----SHKRLQKVLKTLRY 171 (352) Q Consensus 130 ~~~~~~~Yi~~~~eI~eVil-SGGDPl~l-----~~~~L~~ll~~L~~ 171 (352) ..++..++++++|+|.++-. ||..-+++ +-+.|+.++.++.. T Consensus 77 ~~~~v~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~i~~ 124 (144) T 2cfx_A 77 DYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144) T ss_dssp CHHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT T ss_pred CHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHCCC T ss_conf 678899999649850268895078989999998999999999996588 No 132 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=22.47 E-value=35 Score=13.78 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC-CCCC-----CHHHHHHHH-HHHHCCCCCEEEEEEC Q ss_conf 9999999999729974799972698-1324-----989999999-9986199812898743 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGD-PLIL-----SHKRLQKVL-KTLRYIKHVQILRFHS 182 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGD-Pl~l-----~~~~L~~ll-~~L~~i~hv~~IRi~T 182 (352) ...++..++|+++|+|.++-..-|+ -+++ +.+.+..++ +.|.++++|..++.+. T Consensus 83 ~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~i~~~l~~~~gV~~~~t~~ 143 (162) T 2p5v_A 83 DAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSF 143 (162) T ss_dssp THHHHHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEE T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 2399999999848872799995378988899998999999999999974689976999999 No 133 >1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1 c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A* 1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A* 2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A* 3fgo_A* 3fpb_A* 3fps_A* ... Probab=22.41 E-value=35 Score=13.78 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=63.0 Q ss_pred CCCCCCHHHHHHHHHHHH----CCCCCEEEEEECCEEEEEHHHCC---HHHHHHHHHCCCCEEEEECCCCHHHCCHHHHH Q ss_conf 813249899999999986----19981289874343563434339---99999986259938999336995886999999 Q gi|254781065|r 153 DPLILSHKRLQKVLKTLR----YIKHVQILRFHSRVPIVDPQRIN---PELIQCLKEAGKPVYIAIHANHPYEFSEEAIA 225 (352) Q Consensus 153 DPl~l~~~~L~~ll~~L~----~i~hv~~IRi~TR~pv~~P~Rit---~~L~~~l~~~~~~~~iv~H~NHp~Elt~~~~~ 225 (352) +...+.++.-+++.+.+. +-...+.+-++.|..-....... ..-...+. +.+.+.--+---+.+-+++.+ T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~a~~glrvla~A~k~~~~~~~~~~~~~~~~~~~~e---~~l~~lG~~~~~D~lr~~~~~ 609 (994) T 1wpg_A 533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE---TDLTFVGVVGMLDPPRKEVMG 609 (994) T ss_dssp EEEECCHHHHHHHHHHHHHHTTSSCCCEEEEEEEESSCCCGGGCCTTCGGGHHHHT---CSEEEEEEEEEECCBCTTHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEE---CCCEEEEEEEEECCCCCCHHH T ss_conf 30138779999999999997640212444210003566102221003566303540---287899999862688700899 Q ss_pred HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCC------------------CCCCCCC Q ss_conf 999999879898232798623457889999999999986982423011-345765------------------2101186 Q gi|254781065|r 226 AISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH-PDLAAG------------------TSHFRLT 286 (352) Q Consensus 226 A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~-~d~v~G------------------~~hf~v~ 286 (352) +++.|+++|+.+. ++.| |+.+|=....+++ |+.+.---. ...+.| .-.-|++ T Consensus 610 ~I~~l~~aGI~v~----mlTG--D~~~TA~~IA~~~---gi~~~~~~~~~~~~~g~e~~~l~~~e~~~~~~~~~VfaR~s 680 (994) T 1wpg_A 610 SIQLCRDAGIRVI----MITG--DNKGTAIAICRRI---GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVE 680 (994) T ss_dssp HHHHHHHTTCEEE----EECS--SCHHHHHHHHHHT---TSSCTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESCC T ss_pred HHHHHHHCCCEEE----EECC--CCHHHHHHHHHHC---CCCCCCCCCHHHCCCHHHHHHCCHHHHHHHHHCCEEECCCC T ss_conf 9999997889599----9589--9848999999984---99887652002026536565399999997552053651678 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999982 Q gi|254781065|r 287 IEEGQKIVASLKEK 300 (352) Q Consensus 287 ~~~~~~i~~~l~~~ 300 (352) -++-.+|++.++.+ T Consensus 681 P~qK~~iV~~lq~~ 694 (994) T 1wpg_A 681 PSHKSKIVEYLQSY 694 (994) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCC T ss_conf 89999999998518 No 134 >2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A Probab=22.07 E-value=35 Score=13.73 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=15.2 Q ss_pred HHCCCCCEEEEEECCEEEEEHHHCCH Q ss_conf 86199812898743435634343399 Q gi|254781065|r 169 LRYIKHVQILRFHSRVPIVDPQRINP 194 (352) Q Consensus 169 L~~i~hv~~IRi~TR~pv~~P~Rit~ 194 (352) ++..+.+..++.+....-+.|..++. T Consensus 159 ~~~~~~~~~~~~~~~~iei~~~~~~K 184 (258) T 2pq0_A 159 VRNYPEFRFVRWHDVSTDVLPAGGSK 184 (258) T ss_dssp HHHCTTEEEEEEETTEEEEEESSCCH T ss_pred HHHCCCCEEEEECCCEEEEEECCCCH T ss_conf 86285422898758369996588507 No 135 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=21.95 E-value=36 Score=13.71 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=22.9 Q ss_pred CCHHHHHHHHHCCCC-EEEEECCCCHHHCCHHHHHHHHHHHHCCCEEEECH Q ss_conf 399999998625993-89993369958869999999999998798982327 Q gi|254781065|r 192 INPELIQCLKEAGKP-VYIAIHANHPYEFSEEAIAAISRLANAGIILLSQS 241 (352) Q Consensus 192 it~~L~~~l~~~~~~-~~iv~H~NHp~Elt~~~~~A~~~L~~~Gv~v~nQs 241 (352) .|+.++++|++++-+ .++++-- -+.....+.++++.++|..+.|.| T Consensus 121 ~t~~iL~~L~~~~v~ATFFv~G~----~i~~~~~~~~k~~~~~GheIgnHt 167 (311) T 2w3z_A 121 MTPKILDVLAQQHVHATFFLVGC----NITDKVKPILQRQITEGHALGIHS 167 (311) T ss_dssp HHHHHHHHHHHTTCCCEEEECGG----GCCGGGHHHHHHHHHTTCEEEECC T ss_pred CHHHHHHHHHHCCCCEEEEECCC----CHHHCHHHHHHHHHHCCCEEEEEC T ss_conf 18999999998599789982574----343456999999997498898303 No 136 >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Probab=21.49 E-value=36 Score=13.65 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEC-CC Q ss_conf 899999999997299747999726-98 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTG-GD 153 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSG-GD 153 (352) -.++..+++.+..+++|+=|||+| |+ T Consensus 33 ~~~l~~~l~~~~~d~~v~~vvl~g~g~ 59 (260) T 1sg4_A 33 LTELVISLEKLENDKSFRGVILTSDRP 59 (260) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESST T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999998589955999982899 No 137 >1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A Probab=21.32 E-value=37 Score=13.63 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=20.8 Q ss_pred CCCCHHHHHHHC-----CCCHHHHHHHHHHHHH Q ss_conf 249988998641-----9998999999999853 Q gi|254781065|r 7 TLTSAQDLYNAN-----LIKKEQIDEIKEISNH 34 (352) Q Consensus 7 ~i~s~~~L~~~l-----~Ls~e~~~~~~~~~~~ 34 (352) -.++.+.|++++ .|++++...+..|..+ T Consensus 17 rcss~eTLEkv~e~~~y~L~~~el~~f~~AaDH 49 (72) T 1jw2_A 17 RCQTIDTLERVIEKNKYELSDNELAVFYSAADH 49 (72) T ss_dssp TSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 168587899999971055999999999999999 No 138 >1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Probab=21.29 E-value=37 Score=13.62 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=51.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHH----CCHHHHHHHHHC Q ss_conf 8999999999972997479997269813249899999999986199812898743435634343----399999998625 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQR----INPELIQCLKEA 203 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~R----it~~L~~~l~~~ 203 (352) .+-+++-++-+.++-.+. +|-+| ++-+.+.++.+.+.|++.+....+= -|+..+.. .+++.++.+++. T Consensus 79 ~~~i~~Ql~al~~d~~~~-aIKiG---~l~s~~~i~~v~~~l~~~~~~~~v~----dpv~~~~~g~~~~~~~~~~~~~~~ 150 (288) T 1jxh_A 79 PDFVAAQLDSVFSDVRID-TTKIG---MLAETDIVEAVAERLQRHHVRNVVL----DTVMLAKSGDPLLSPSAIETLRVR 150 (288) T ss_dssp HHHHHHHHHHHHTTSCCS-EEEEC---CCCSHHHHHHHHHHHHHTTCCSEEE----ECCCC------CCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCC-EEEEC---CCCCHHHHHHHHHHHHHCCCCCEEE----CCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999999999985258888-89997---7475888899999998679987786----567667888603368999999984 Q ss_pred CCC-EEEEE-CCCCHHHC--------CHHHHHHHHHHHHCCCEEEECHHHHHCCCCCH Q ss_conf 993-89993-36995886--------99999999999987989823279862345788 Q gi|254781065|r 204 GKP-VYIAI-HANHPYEF--------SEEAIAAISRLANAGIILLSQSVLLKGINDDP 251 (352) Q Consensus 204 ~~~-~~iv~-H~NHp~El--------t~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~ 251 (352) =.| ..++| ...-..+| .++..+|.++|.+.|. +.|++||...+. T Consensus 151 Llp~adlITPN~~Ea~~Ll~~~~~~~~~~~~~aa~~l~~~G~----~~VlikG~~~~~ 204 (288) T 1jxh_A 151 LLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGC----EAVLMKGGHLED 204 (288) T ss_dssp TGGGCSEEECBHHHHHHHHTCCCCCSHHHHHHHHHHHHHTTC----SEEEEBC----- T ss_pred CCCCCEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC----CEEEECCCCCCC T ss_conf 504151716878999999657833476999999999976679----779977765777 No 139 >3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis} Probab=21.13 E-value=29 Score=14.30 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=29.1 Q ss_pred ECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 32798623457889999999999986982423011345765210118699999999999982888654 Q gi|254781065|r 239 SQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQ 306 (352) Q Consensus 239 nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~~~lsG~~~ 306 (352) ...|+|.|.+|+ +++.-||..|....+.+.++-.+.++ ...-.|+ T Consensus 177 ~H~vVl~GYd~~-------------------~v~v~DP~~g~~~~~~~~~~F~~~w~----~~G~~Av 221 (236) T 3erv_A 177 EHCVVLIGYDQE-------------------SVYIRDPLKDSLDVKVPREKFEQAWV----QMGSQAI 221 (236) T ss_dssp EEEEEEEEECSS-------------------EEEEECTTSCCSCCEEEHHHHHHHHH----HTTCCEE T ss_pred CEEEEEEEECCC-------------------EEEEECCCCCCCCEEECHHHHHHHHH----HHCCEEE T ss_conf 829999997599-------------------79998889986127976999999999----8498999 No 140 >3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A Probab=20.98 E-value=37 Score=13.58 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 9999999999729974799972698 Q gi|254781065|r 129 KDTEAALAYIQEKSQIWEVIFTGGD 153 (352) Q Consensus 129 ~~~~~~~~Yi~~~~eI~eVilSGGD 153 (352) .++..+++.+.++++++=|||+|+. T Consensus 30 ~~l~~al~~~~~d~~v~~vvl~~~g 54 (254) T 3gow_A 30 DALYAALKEGEEDREVRALLLTGAG 54 (254) T ss_dssp HHHHHHHHHHHHCTTCCEEEEEEST T ss_pred HHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 9999999999768893899996789 No 141 >1isp_A Lipase; alpha/beta hydrolase fold; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3d2b_A 3d2c_A Probab=20.87 E-value=37 Score=13.64 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=7.0 Q ss_pred HHHHHHHHHHCCCEEEEEE Q ss_conf 9999999972997479997 Q gi|254781065|r 131 TEAALAYIQEKSQIWEVIF 149 (352) Q Consensus 131 ~~~~~~Yi~~~~eI~eVil 149 (352) +.+.++.+.++...+.|.| T Consensus 55 l~~~i~~~~~~~~~~~v~l 73 (181) T 1isp_A 55 LSRFVQKVLDETGAKKVDI 73 (181) T ss_dssp HHHHHHHHHHHHCCSCEEE T ss_pred HHHHHHHHHHHCCCCCEEE T ss_conf 9999999998719882899 No 142 >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} Probab=20.18 E-value=39 Score=13.47 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC--------CCC---------HHHHHHHHHHHHCCCC Q ss_conf 8999999999972997479997269813--------249---------8999999999861998 Q gi|254781065|r 128 SKDTEAALAYIQEKSQIWEVIFTGGDPL--------ILS---------HKRLQKVLKTLRYIKH 174 (352) Q Consensus 128 ~~~~~~~~~Yi~~~~eI~eVilSGGDPl--------~l~---------~~~L~~ll~~L~~i~h 174 (352) ..++.++++.+..+++|+=|+++|++.. .+. ...+..++.++...+- T Consensus 32 ~~~l~~~l~~~~~d~~v~vvvl~g~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 95 (257) T 2ej5_A 32 NAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEK 95 (257) T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCS T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999964989089999789988657776798642000135677666789998753699 Done!