RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] (352 letters) >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} (A:95-342) Length = 248 Score = 119 bits (297), Expect = 8e-28 Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 2/248 (0%) Query: 75 EDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAA 134 EDP+ ++ SP+ G+ HRYPDR+LL + C YCR C RR G + + A Sbjct: 1 EDPLHEDTDSPVPGLTHRYPDRVLLLITDXCSXYCRHCTRRRFAGQSDD-SXPXERIDKA 59 Query: 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP 194 + YI+ Q+ +V+ +GGD L++S + L+ ++ LR I HV+I+R SR P+V PQRI P Sbjct: 60 IDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITP 119 Query: 195 ELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEIL 254 EL+ LK+ PV++ H NHP E +EE+ A LA+AG+ L +QSVLL+G+ND + Sbjct: 120 ELVNXLKKY-HPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVX 178 Query: 255 ANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDLP 314 L+ V++R++PYY++ DL+ G HFR + +G +I+ L+ SG C P +++D P Sbjct: 179 KELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAP 238 Query: 315 GGYGKVKI 322 GG GK + Sbjct: 239 GGGGKTPV 246 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} (A:1-313) Length = 313 Score = 74.6 bits (181), Expect = 2e-14 Identities = 28/272 (10%), Positives = 84/272 (30%), Gaps = 14/272 (5%) Query: 83 HSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSK--DTEAALAYIQE 140 +K + R + L + C C +C +E+ G + ++ + + Sbjct: 2 VEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKV 61 Query: 141 --KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQ 198 + + ++ TGG+PL+ + L ++ L I ++ + + ++ Sbjct: 62 YAELGVKKIRITGGEPLM--RRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKH-GQKLYDA 118 Query: 199 CLKEAGKPVYIAIHANH-----PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI 253 L+ + + + I + G+ + V+ KG + + Sbjct: 119 GLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG--INDDQ 176 Query: 254 LANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILDL 313 + ++ F + I+ ++ D+ + +++ +++ Sbjct: 177 IIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGE 236 Query: 314 PGGYGKVKIDTHNIKKVGNGSYCITDHHNIVH 345 Y + K + + + S Sbjct: 237 VAKYYRHKDNGVQFGLITSVSQSFCSTCTRAR 268 >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Length = 245 Score = 54.4 bits (129), Expect = 2e-08 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 5/229 (2%) Query: 77 PIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEA--A 134 + HS P + C + C +C R+ + G ++ +D Sbjct: 1 SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVV 60 Query: 135 LAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINP 194 + V +GG+ + L + ++ + + L + V DP Sbjct: 61 TYRHFMNASGGGVTASGGEAI-LQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDEL 119 Query: 195 ELIQC-LKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI 253 + + K + IH N + + LAN + + + V++ G +DD + Sbjct: 120 LEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDS 179 Query: 254 LANLMRTFVEL-RIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKI 301 L ++ ++ L + E V K++ Sbjct: 180 AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKET 228 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Length = 342 Score = 44.0 bits (102), Expect = 3e-05 Identities = 29/260 (11%), Positives = 72/260 (27%), Gaps = 29/260 (11%) Query: 73 EREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTE 132 ++ G + +H + + +L C C FC+R D Sbjct: 49 KKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPA 108 Query: 133 AALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLK---------------TLRYIKHVQI 177 + + + + + G + ++ Sbjct: 109 FIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHK 168 Query: 178 LRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHP-----------YEFSEEAIAA 226 F + + E + + +Y++I A + E + Sbjct: 169 RGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRF 228 Query: 227 ISRLANAGIILLSQSVLLKGIND-DPEILANLMRT--FVELRIKPYYLHHPDLAAGTSHF 283 + + + + + L+KG N PE A L+ + + K Y T + Sbjct: 229 LELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINN 288 Query: 284 RLTIEEGQKIVASLKEKISG 303 + ++ ++ +L + + G Sbjct: 289 MPSHQDIREFAEALVKHLPG 308 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} (A:) Length = 369 Score = 42.1 bits (97), Expect = 1e-04 Identities = 28/254 (11%), Positives = 63/254 (24%), Gaps = 23/254 (9%) Query: 33 NHYSIALTPVIANLINPHNPNDPIARQFIPQKEELNILPEEREDPIGDNNHSPLKGIVHR 92 +H+ + + EL P H Sbjct: 7 HHHDYDIPTTENLYFQGSAHRPRWTLSQV---TELFEKPLLDLLFEAQQVHRQHFDPRQV 63 Query: 93 YPDRILLKLLHVCPVYCRFCFRREMVGSQ--KGTVLSSKDTEAALAYIQEKSQIWEVIFT 150 +L CP C++C + + ++ + + + + Sbjct: 64 QVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGA 123 Query: 151 GGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYI- 209 + VQ ++ + ++ Q L AG Y Sbjct: 124 AWKNPHERDMP--------YLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNH 175 Query: 210 -------AIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFV 262 +E + + ++ +AGI + S ++ G+ + + A L+ Sbjct: 176 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV--GLGETVKDRAGLLLQLA 233 Query: 263 ELRIKPYYLHHPDL 276 L P + L Sbjct: 234 NLPTPPESVPINML 247 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} (A:1-364) Length = 364 Score = 41.4 bits (95), Expect = 2e-04 Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 17/246 (6%) Query: 62 PQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFC----FRREM 117 P+ E ED + R L + C C FC Sbjct: 21 PRYTSYPTALEFSEDFGEQAFLQAVARYPERP--LSLYVHIPFCHKLCYFCGCNKIVTRQ 78 Query: 118 VGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI 177 + + + A + + ++ + GG P L+ ++ +++K LR ++ Q Sbjct: 79 QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLR--ENFQF 136 Query: 178 LRFHSRVPIVDPQRINPELIQCLKEAGKPVYI---------AIHANHPYEFSEEAIAAIS 228 VDP+ I +++ L+ G + + E A ++ Sbjct: 137 NADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLN 196 Query: 229 RLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIE 288 G + ++ PE A ++ EL + + + I+ Sbjct: 197 HAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIK 256 Query: 289 EGQKIV 294 + Sbjct: 257 DADLPS 262 >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Length = 182 Score = 38.3 bits (88), Expect = 0.002 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 16/137 (11%) Query: 144 IWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEA 203 V F GG+PL+ + ++ L+ I + E + + Sbjct: 4 GGGVTFCGGEPLL----HPEFLIDILKRCGQQGI-----HRAVDTTLLARKETVDEVXRN 54 Query: 204 GKPVYIAIHANHPYEFS-------EEAIAAISRLANAGIILLSQSVLLKGINDDPEILAN 256 + + I + + E + I R+A A + L++G+N D + + Sbjct: 55 CELLLIDLKSXDSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKL 114 Query: 257 LMRTFVELRIKPYYLHH 273 L P ++ Sbjct: 115 SAEFLASLPRHPEIINL 131 >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Length = 311 Score = 35.4 bits (80), Expect = 0.012 Identities = 30/284 (10%), Positives = 62/284 (21%), Gaps = 50/284 (17%) Query: 55 PIARQFIPQKEELNILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFR 114 Q ++ N + + + + C C FC+R Sbjct: 12 KQRYQIDGHTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWR 71 Query: 115 REMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKH 174 ++ + E L + + + L + Sbjct: 72 VLPRDIGIDISQ------------IKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGE 119 Query: 175 VQILRFHSRVPIV----DPQRINPELIQCLKEAGK-PVYIAIHAN--------------- 214 + + + P L + +K K + +N Sbjct: 120 KKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIEPTQL 179 Query: 215 ----------------HPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLM 258 + E+I + ++ L++G NDD L Sbjct: 180 YISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKKRTCIRTTLIRGYNDDILKFVELY 239 Query: 259 RT--FVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEK 300 + +K Y L +E K+ L E Sbjct: 240 ERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDEN 283 >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} (A:1-112) Length = 112 Score = 33.1 bits (75), Expect = 0.050 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 16/105 (15%) Query: 105 CPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQE--KSQIWEVIFTGGDPLILSH--- 159 C C FC GS + S+ E +++ K E+I D Sbjct: 14 CDRGCTFCSIPSFKGSLR-----SRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLY 68 Query: 160 --KRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202 + L +L+ L + +R + P + E+I E Sbjct: 69 RKQALPDLLRRLNSLNGEFWIRVXY----LHPDHLTEEIISAXLE 109 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* (A:) Length = 348 Score = 31.3 bits (69), Expect = 0.20 Identities = 19/223 (8%), Positives = 57/223 (25%), Gaps = 9/223 (4%) Query: 67 LNILPEEREDPIGDNNHSPLKGIVHR-YPDRILLKLLHVCPVYCRFCFRREMVGSQKGTV 125 L+I + + + V R +++ +VC C +C R + K Sbjct: 24 LSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYR 83 Query: 126 LSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVP 185 ++ ++ + ++ G+ + ++K ++ + L Sbjct: 84 MTPEEIVERARLAVQF-GAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPR 142 Query: 186 --IVDPQRINPELIQCLKEAGKP-VYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSV 242 + + E P ++ + + +E + Sbjct: 143 EYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNXL----LTLKELGYETGAGS 198 Query: 243 LLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRL 285 ++ + L + + E + T Sbjct: 199 MVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANE 241 >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276) Length = 276 Score = 31.4 bits (71), Expect = 0.20 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIND-DP 251 N LI+ + GKP+ ++ N ++++ I +L ++ D Sbjct: 137 NYPLIKLVASFGKPIILSTGXNSIESI-KKSVEIIREAGVPYALLHCTNIYPTPYEDVRL 195 Query: 252 EILANLMRTF 261 +L F Sbjct: 196 GGXNDLSEAF 205 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 31.0 bits (70), Expect = 0.22 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 39/131 (29%) Query: 69 ILPEEREDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSS 128 IL RE SP + +Y R + R + Sbjct: 6 ILTTAREHHSSVKYASPNLNM--KYRKR-------------QLVTREAQI---------K 41 Query: 129 KDTEAALAYIQ-EKSQIWEVIFTGGDPLILSHKRLQKVLK-TLRYIKHVQIL---RFHSR 183 E L ++ E +I D +R +++ ++ Q F+ R Sbjct: 42 DWVENELEALKLEAEEI-----PSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKR 96 Query: 184 VPIVDPQRINP 194 DP RI P Sbjct: 97 ----DP-RIAP 102 >2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258) Length = 105 Score = 30.9 bits (70), Expect = 0.27 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 9/59 (15%) Query: 100 KLLHVCP------VYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGG 152 +L + +Y RF R G G + SK TE AL+ + E +++ G Sbjct: 43 RLQKLHTSIAGRNLYIRFQSR---SGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSG 98 >3hcy_A Putative two-component sensor histidine kinase protein; structural genomics, PSI, MCSG, protein structure initiative; 2.80A {Sinorhizobium meliloti 1021} (A:) Length = 151 Score = 30.4 bits (68), Expect = 0.32 Identities = 13/121 (10%), Positives = 33/121 (27%), Gaps = 8/121 (6%) Query: 133 AALAYIQEKSQIWEVIFTGGDP----LILSHKRLQKVLKTLR--YIKHVQIL-RFHSRVP 185 A++ E + V G + H ++++V Sbjct: 24 ASILLFDEAGTMRFVAARGLSEHYQRAVDGHSPWITGANEPEPIFVENVDDAEFSRELKE 83 Query: 186 IVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLL 244 + + I L G+ + + + P+ F++ I +A + + Sbjct: 84 SIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAE 143 Query: 245 K 245 Sbjct: 144 Y 144 >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.12A {Shewanella oneidensis} (A:1-295) Length = 295 Score = 30.0 bits (66), Expect = 0.47 Identities = 6/50 (12%), Positives = 9/50 (18%), Gaps = 2/50 (4%) Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISRLAN 232 D + + L G + H I L Sbjct: 215 YHKDLNLAFADKLTKLAPKGLGFXAKYYPEETHQSVSHIGLYDGIRHLFK 264 >3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural genomics; 3.10A {Geobacter sulfurreducens} (A:) Length = 181 Score = 29.7 bits (66), Expect = 0.54 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 3/114 (2%) Query: 145 WEVIFTGGDPLILSHKRLQKVLKTLR--YIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202 ++ F G + + V + + + + P + ++ N L + + Sbjct: 68 FDPAFIGKIRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSXLSFPIGD 127 Query: 203 AGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILA 255 + I ++ F E+ I +S +AN + + + E A Sbjct: 128 KKEVYGVINLNTTSIRSFHEDEIYFVSIIANLILTAIKLRQQVASSRKAAEASA 181 >1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300) Length = 300 Score = 29.5 bits (66), Expect = 0.75 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%) Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237 + L++ + +P + + EA I N I + Sbjct: 147 HLPLLKYVARLNRPXIFSTAGAEISDV-HEAWRTIRAEGNNQIAI 190 >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.75A {Oleispira antarctica} (A:) Length = 280 Score = 29.1 bits (63), Expect = 0.96 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 2/47 (4%) Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISR 229 + Q L P+ + H +H Y F I R Sbjct: 226 NFLAEQLKPEVLEAAASSNNYPLELRSHEGYDHSYYFIASFIEDHLR 272 >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 kdops; 1.75A {Neisseria meningitidis serogroup B} PDB: 3fyo_A* 3fyp_A* 1phw_A* 1g7v_A* 1gg0_A 1phq_A* 1d9e_A* 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* (A:) Length = 280 Score = 28.2 bits (62), Expect = 1.7 Identities = 14/133 (10%), Positives = 36/133 (27%), Gaps = 12/133 (9%) Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPE 252 +L+ + + G V + + + + AG L + +G + + Sbjct: 118 QTDLVVAMAKTGNVV---NIKKPQFLSPSQMKNIVEKFHEAGNGKL--ILCERGSSFGYD 172 Query: 253 ILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQPFYILD 312 L M F + K + P + T + + Sbjct: 173 NLVVDMLGFGVM--KQTCGNLPVIFDVTHSLQTRDAGSAASGG-----RRAQALDLALAG 225 Query: 313 LPGGYGKVKIDTH 325 + + +++H Sbjct: 226 MATRLAGLFLESH 238 >3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structural genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} (A:) Length = 171 Score = 27.8 bits (61), Expect = 2.2 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 12/117 (10%) Query: 133 AALAYIQEKSQIWEVIFTGGDP--------LILSHKRLQKVLKTLR--YIKHVQILRFHS 182 ++ + E++Q + + + G L LS + V + +++ + Sbjct: 45 CSIYLLDERNQRYLLXASKGLNPESVGHVSLQLSEGLVGLVGQREEIVNLENASKHERFA 104 Query: 183 RVPIVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLAN-AGIIL 237 +P + N L + K + + P +FSE A + + L ++ Sbjct: 105 YLPETGEEIYNSFLGVPVXYRRKVXGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVI 161 >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} (A:1-50,A:81-218) Length = 188 Score = 27.5 bits (60), Expect = 2.6 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%) Query: 170 RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAIS 228 + + L H + V + + LK G V + H E + I I Sbjct: 123 ASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMGH--EVLPQEIHDIG 180 Query: 229 R 229 Sbjct: 181 A 181 >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} (A:) Length = 278 Score = 27.1 bits (58), Expect = 3.6 Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 2/47 (4%) Query: 185 PIVDPQRINPELIQCLKEAGKPVYIAIH--ANHPYEFSEEAIAAISR 229 ++ + +K + + H +H Y F + Sbjct: 225 SFLEKGLRPWLFEEAIKGTDIGLTLRXHDRYDHSYYFISTFXDDHLK 271 >2p97_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} (A:1-101) Length = 101 Score = 27.1 bits (60), Expect = 4.0 Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 186 IVDPQRINPELIQCLKEAGKPVYIAI-HANH 215 ++DP ++ + L+ G V+I + +++H Sbjct: 37 LIDPVALSNHDWKHLESLGGVVWIVLTNSDH 67 >1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3 icosahedral capsid, icosahedral virus; 3.40A {Norwalk virus} (A:236-282,A:402-530) Length = 176 Score = 27.0 bits (60), Expect = 4.2 Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 4/27 (14%) Query: 176 QILRFHSRVPIVDPQRIN----PELIQ 198 ++ F S++P + E I Sbjct: 63 VLVFFMSKMPGPGAYNLPCLLPQEYIS 89 >1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} (A:) Length = 423 Score = 26.6 bits (57), Expect = 4.7 Identities = 4/40 (10%), Positives = 9/40 (22%) Query: 76 DPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFRR 115 P+ +H + + + L Y Sbjct: 104 TPLVTLHHFTSPLWFMKKGGFLREENLKHWEKYIEKVAEL 143 >1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} (A:1-130,A:232-283) Length = 182 Score = 26.4 bits (58), Expect = 5.0 Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 242 VLLKGINDDPEILANLMRTFVELRIKPYYLHHPD 275 V L+ P+ L + F EL I P Y H Sbjct: 45 VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEG 78 >2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250) Length = 144 Score = 26.8 bits (59), Expect = 5.0 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPE 252 E + + + G P+ + N+P + ++ R A AG+ + P Sbjct: 24 AAEFLHGIMDKGLPLVLL--TNYPSQTGQDLAN---RFATAGVDVPDSVF----YTSSPW 74 Query: 253 ILANLMRTF 261 I+ + Sbjct: 75 IIRAALNKM 83 >2zmf_A The C-Terminal Gaf Domain Of Human Phosphodiesterase 10 {Homo sapiens} (A:) Length = 189 Score = 26.3 bits (57), Expect = 5.7 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%) Query: 179 RFHSRVPIVDPQRINPELIQCLKEAGKP--VYIAIHANHPYEFSEEAIAAISRLAN-AGI 235 RF+ V + L + G V ++ FS+ A + Sbjct: 113 RFNREVDLYTGYTTRNILCXPIVSRGSVIGVVQXVNKISGSAFSKTDENNFKXFAVFCAL 172 Query: 236 IL 237 L Sbjct: 173 AL 174 >2fur_A Hypothetical protein; 10640715, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Thermoplasma acidophilum} (A:1-185) Length = 185 Score = 26.5 bits (58), Expect = 6.0 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 12/71 (16%) Query: 240 QSVLLKG---INDDPE----ILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQK 292 S L+ G DD E + L V+ R + G F + E Sbjct: 103 VSALIFGRPYEIDDTEKKIEVFRLLTEKLVKGRWDNSIKPSYEDLNGVFVFAVKPET--- 159 Query: 293 IVASLKEKISG 303 S K + Sbjct: 160 --FSXKARTGP 168 >1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} (A:147-296) Length = 150 Score = 26.4 bits (58), Expect = 6.1 Identities = 6/45 (13%), Positives = 16/45 (35%) Query: 193 NPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIIL 237 ++ L + + IH N+ +E + + G+ + Sbjct: 104 PGGXLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVEV 148 >1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase; 2.50A {Hepatitis c virus} (A:203-343,A:497-638) Length = 283 Score = 26.3 bits (57), Expect = 6.2 Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 104 VCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPL 155 +C Y C E+ ++ L + L Q+ + WE +FTG + Sbjct: 150 LCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHI 201 >3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} (A:) Length = 177 Score = 26.3 bits (57), Expect = 6.9 Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 9/102 (8%) Query: 143 QIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202 E + S R + R ++ P R +I L Sbjct: 78 TWLEGHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGXRQIVLSPLRSGGRVIGFL-- 135 Query: 203 AGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLL 244 + + +S+ + +S ++++ I +S ++ Sbjct: 136 -------SFVSAEEKLWSDGDKSLLSGVSSSIAIAVSNALAY 170 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129) Length = 129 Score = 26.2 bits (57), Expect = 6.9 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 5/56 (8%) Query: 184 VPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLAN-AGIILL 238 + P P+ + +AG + + I A G ++ Sbjct: 75 SIVFVPAPFAPDAVYEAVDAGIRLVVVI----TEGIPVHDTMRFVNYARQKGATII 126 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:1-201) Length = 201 Score = 26.0 bits (57), Expect = 8.6 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 153 DPLILSHKRLQKVLKTLRYI-----KHVQILRFHSRVPIVDPQRINPELI-QCLKEA-GK 205 I S++R+ L T++Y+ ++V + + ++ + + + L+ GK Sbjct: 30 GKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGK 89 Query: 206 PVYIAIHANHPYEFSEEAIAAISRLANAGIILL 238 V E AA+ A +ILL Sbjct: 90 DVTFL-----NDCVGPEVEAAVKASAPGSVILL 117 >1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Saccharomyces cerevisiae} (1:) Length = 141 Score = 25.7 bits (56), Expect = 9.7 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%) Query: 173 KHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLAN 232 K + I P+ K ++ + A + E + + +++N Sbjct: 80 KIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENEL--LMKISN 137 Query: 233 AG 234 A Sbjct: 138 AA 139 >1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} (A:) Length = 195 Score = 25.5 bits (55), Expect = 9.9 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 6/132 (4%) Query: 133 AALAYIQEKSQIWEVIFTGGDP---LILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDP 189 A Y+ E + F G + + + + ++ + I Sbjct: 64 WAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQ-RIEDVHVFDG-HIACD 121 Query: 190 QRINPELIQCLKEAGKPV-YIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248 N E++ L + + + I + F++E + +L +L+ + K Sbjct: 122 AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 181 Query: 249 DDPEILANLMRT 260 + Sbjct: 182 SVAGEGGSHHHH 193 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.139 0.412 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,851,483 Number of extensions: 136359 Number of successful extensions: 492 Number of sequences better than 10.0: 1 Number of HSP's gapped: 491 Number of HSP's successfully gapped: 50 Length of query: 352 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 263 Effective length of database: 1,947,404 Effective search space: 512167252 Effective search space used: 512167252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.5 bits)