RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 29.3 bits (65), Expect = 0.53
Identities = 17/153 (11%), Positives = 46/153 (30%), Gaps = 13/153 (8%)
Query: 156 ILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANH 215
LS Q+ L + + ++ D + + + + ++++
Sbjct: 71 FLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLAR 130
Query: 216 PYEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVEL--RIKPYYLHH 273
Y + L +A K DP L + +++L ++ Y+
Sbjct: 131 NYAPYSTDWEGVRNLEDA-----------KPPEKDPNDLQRADQIYLQLMVNLESYWGSR 179
Query: 274 PDLAAGTSHFRLTIEEGQKIVASLKEKISGLCQ 306
+ + E + + + +S L +
Sbjct: 180 MRALTVVTSYEREYNELLAKLRKVDKAVSALQE 212
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 27.5 bits (60), Expect = 1.7
Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 31/230 (13%)
Query: 6 KTLTSAQDLYNANLIKKEQI-DEIKEISNHYSIALTPVIANLINPHNPNDPIARQFIPQK 64
+ + +K++I +++K + + + + ++ ++
Sbjct: 46 TLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDI------------L 93
Query: 65 EELNILPEEREDPIGDNNHSPLKGIVHRYPDRILL------KLLHVCPVYCRFCFRREMV 118
++L+ E + L+ I D L + L V +
Sbjct: 94 KKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEE 153
Query: 119 GSQKGTVLSSKDTEAALAYIQE-KSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQI 177
+ +S + + ++++ + G K++ + YI I
Sbjct: 154 FATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEII 213
Query: 178 LRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAI 227
LR V L+ LK AG + I PY + +
Sbjct: 214 LRPVDEVK---------VLLNDLKGAG--FELGIATGRPYTETVVPFENL 252
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
MoaA {Staphylococcus aureus [TaxId: 1280]}
Length = 327
Score = 27.4 bits (59), Expect = 1.9
Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 20/175 (11%)
Query: 92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSK--DTEAALAYIQEKSQI-WEVI 148
R + L + C C +C +E+ G + ++ + + +++ + I
Sbjct: 9 RPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKI 68
Query: 149 FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAG-KPV 207
G ++ + K + I + + + Q L +AG + +
Sbjct: 69 RITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTN-------GLLLKKHGQKLYDAGLRRI 121
Query: 208 YIAIHANHP---------YEFSEEAIAAISRLANAGIILLSQSVLLKGINDDPEI 253
+++ A + + I + G+ + V+ KGINDD I
Sbjct: 122 NVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQII 176
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
synthetase ATP-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.7 bits (59), Expect = 2.7
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 236 ILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVA 295
L +L + PE +A L TF L Y L + G + + V
Sbjct: 206 ELSRPGMLEMLLPGQPEAVARLRATFAGL----YSLDVGE--EGDQAIAEALAAPSRFV- 258
Query: 296 SLKEKISGLCQPFYILDLP 314
LK + G Y ++
Sbjct: 259 -LKPQREGGGNNLYGEEMV 276
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 139
Score = 26.3 bits (58), Expect = 3.6
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 201 KEAGKPVYIAIHANHPYEFSEEAIAAISRLANAG 234
K ++ + A + E + + +++NA
Sbjct: 106 NNLFKGYHVQVTARDEDDLDENEL--LMKISNAA 137
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
GlpQ {Escherichia coli [TaxId: 562]}
Length = 328
Score = 26.2 bits (56), Expect = 4.0
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 192 INPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANAGIILLSQSVLLKGI-NDD 250
++Q ++ V HPY + + + N L + G+ D
Sbjct: 267 KLTGMVQDAQQNKLVV-------HPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDF 319
Query: 251 PEILANLM 258
P+ +
Sbjct: 320 PDKAVKFL 327
>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 25.5 bits (56), Expect = 6.2
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 174 HVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAISRLANA 233
++L + + +++ + G +YI + A E S+++ AA+ A
Sbjct: 19 KTRVLSIQCTLT--EAKQVTWRAVWN----GGGLYIELPAGPLPEGSKDSFAALLEFAEE 72
Query: 234 GIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHF 283
L + + E A L+RTF L + HP +
Sbjct: 73 ---QLRADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKRPDAC 119
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 25.7 bits (56), Expect = 6.7
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 98 LLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPL 155
+ +C Y C E+ ++ L + L Q+ + WE +FTG +
Sbjct: 160 MFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHI 217
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
{Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Length = 367
Score = 25.4 bits (55), Expect = 7.5
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 13 DLYNANLIKKEQIDEIKE----------ISNHYSIALTPVIANLINPHNPNDPIARQFI 61
D N+ + +I+E ISNH + A +I+ L+ N IA I
Sbjct: 107 DFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLL--EKTNPYIAENTI 163
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 25.3 bits (55), Expect = 7.6
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 25/105 (23%)
Query: 201 KEAGKPVYIAIHAN-----------HPYEFSEEAIAAISRLA-----NAGIILLSQSVLL 244
G I + + Y +A+ +LA + L
Sbjct: 19 AMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGK 78
Query: 245 KGINDDP-------EILANLMRTFVEL--RIKPYYLHHPDLAAGT 280
I A ++R E ++ Y PD+ +
Sbjct: 79 SVIALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNS 123
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 25.3 bits (54), Expect = 7.8
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 18/126 (14%)
Query: 116 EMVGSQKGTVLSSKDTEAALA--------YIQEKSQIWEVIFTGGDPLILSHKRLQKVLK 167
+ +G + + T +++ I+ SHK K +
Sbjct: 124 KQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA---------SHKSPIKAVS 174
Query: 168 TLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEEAIAAI 227
+ + V + I I+ E G + + + I I
Sbjct: 175 FVGMNMRLVETVLDGDRVYVPVEDIE-NAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEI 233
Query: 228 SRLANA 233
+++
Sbjct: 234 AKICEN 239
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 25.2 bits (55), Expect = 9.8
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 20 IKKEQIDEIKEISNHYSIALTPVIA 44
+K+ Q+ ++ + + +++ P+IA
Sbjct: 58 VKEHQVRKLLDFLSMFTMKGVPLIA 82
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 24.8 bits (53), Expect = 10.0
Identities = 8/110 (7%), Positives = 26/110 (23%), Gaps = 6/110 (5%)
Query: 160 KRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEF 219
+ L K ++ K + + I G+ I +
Sbjct: 18 ELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFG 77
Query: 220 SEEAIAAISRLANAG------IILLSQSVLLKGINDDPEILANLMRTFVE 263
A + + A ++ + + + + ++ +
Sbjct: 78 MRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.412
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,405,088
Number of extensions: 70669
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 32
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)