HHsearch alignment for GI: 254781066 and conserved domain: PRK00484

>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=0  Score=743.15  Aligned_cols=340  Identities=31%  Similarity=0.513  Sum_probs=313.1

Q ss_pred             CCCCCCCCCC--CHHHCCCHH-----------HHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECC
Q ss_conf             9988987478--831261548-----------999999999999999999879889847821056898544541241024
Q gi|254781066|r    1 MHQIPSQPWW--NRDFHYRRR-----------PFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELI   67 (355)
Q Consensus         1 ~~~~p~~~~~--~~~~~~r~R-----------~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~   67 (355)
T Consensus       137 l~plP~k~~g~~d~e~r~r~RyLDLi~n~~~~~~f~~Rs~ii~~iR~~l~~~gF~EVeTPiL~~~~gGA~-ArpF~t~--  213 (491)
T PRK00484        137 LRPLPDKFHGLSDQETRYRQRYLDLIVNEESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIPGGAA-ARPFITH--  213 (491)
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCCCCCC--
T ss_conf             8899854445567556311330210279999999999999999999999867689986787766688756-6765564--


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             78867832000028589999898744688999886424567775448430020001157765787775578887766641
Q gi|254781066|r   68 IQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVA  147 (355)
Q Consensus        68 ~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~  147 (355)
T Consensus       214 -~n~l~~~~yL~~SPqLylk~l~vgG~ervfeI~r~FR~E~~~~rH~pEFT~lE~e~af~d~~dvm~l~E~li~~v~~~v  292 (491)
T PRK00484        214 -HNALDIDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTRHNPEFTMIEFYQAYADYNDMMDLTEELIRHLAKEV  292 (491)
T ss_pred             -CCCCCCCEEECCCHHHHHHHHHHCCCHHHEEHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -4566855442068789877787627202222487662575543418401021367724799999999999999999996


Q ss_pred             -CCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEE
Q ss_conf             -8830002234332467732078888656660876532345556232799999999768877876534789876643003
Q gi|254781066|r  148 -NQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKI  226 (355)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i  226 (355)
T Consensus       293 ~g~~~~~~~~~~idl~~pf~rit~~eai~~~~g~d~~~~~------~~~~l~~~~~~~g~~~~~~~~~g~l~~~lfe~~v  366 (491)
T PRK00484        293 LGTTKITYGGTEIDFGKPFKRLTMVDAIKEYTGVDFTPQD------EEEEARAIAKELGVEVEKSWGLGKLINELFEEFV  366 (491)
T ss_pred             CCCCEEEECCEEECCCCCCEECCHHHHHHHHCCCCCCCCC------CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             1995673287763378995022399999997099876556------7899999999869987887787899999888776


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             62237675443257688886413678778363302202236712256402106999999999999999972888530101
Q gi|254781066|r  227 EPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPID  306 (355)
Q Consensus       227 e~~l~~~~pvfi~~yP~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D  306 (355)
T Consensus       367 e~~l--~~PtFV~d~P~e~sPlak~~~~dp~~~erfdL~i~G~Ei~ng~~el~Dp~~Q~~rf~~q~~~k~~gd~ea~~~D  444 (491)
T PRK00484        367 EPKL--IQPTFITDYPVEISPLAKRHRSNPGFTERFELFIGGRELANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFYD  444 (491)
T ss_pred             HHHC--CCCEECCCCCCCCCCCCCCCCCCCCCEEEECEEECCEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf             5411--46400136722158755668889670367564348899736503317999999999999999864883233240


Q ss_pred             HHHHHHH-CCCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCCC
Q ss_conf             8999986-188963245315999989981559713111585648743
Q gi|254781066|r  307 EDFLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQ  352 (355)
Q Consensus       307 ~~fl~al-~G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~~  352 (355)
T Consensus       445 edfl~Al~yG~PPhgG~GlGiDRLvMlLtg~~sIRdVI~FP~~kp~~  491 (491)
T PRK00484        445 EDFLRALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPEK  491 (491)
T ss_pred             HHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHCCCCCCCCCCC
T ss_conf             99999977799998526556999999983999577501688889999