HHsearch alignment for GI: 254781066 and conserved domain: PRK00484
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=743.15 Aligned_cols=340 Identities=31% Similarity=0.513 Sum_probs=313.1
Q ss_pred CCCCCCCCCC--CHHHCCCHH-----------HHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECC
Q ss_conf 9988987478--831261548-----------999999999999999999879889847821056898544541241024
Q gi|254781066|r 1 MHQIPSQPWW--NRDFHYRRR-----------PFLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELI 67 (355)
Q Consensus 1 ~~~~p~~~~~--~~~~~~r~R-----------~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~ 67 (355)
T Consensus 137 l~plP~k~~g~~d~e~r~r~RyLDLi~n~~~~~~f~~Rs~ii~~iR~~l~~~gF~EVeTPiL~~~~gGA~-ArpF~t~-- 213 (491)
T PRK00484 137 LRPLPDKFHGLSDQETRYRQRYLDLIVNEESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIPGGAA-ARPFITH-- 213 (491)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCCCCCC--
T ss_conf 8899854445567556311330210279999999999999999999999867689986787766688756-6765564--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78867832000028589999898744688999886424567775448430020001157765787775578887766641
Q gi|254781066|r 68 IQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVA 147 (355)
Q Consensus 68 ~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~ 147 (355)
T Consensus 214 -~n~l~~~~yL~~SPqLylk~l~vgG~ervfeI~r~FR~E~~~~rH~pEFT~lE~e~af~d~~dvm~l~E~li~~v~~~v 292 (491)
T PRK00484 214 -HNALDIDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTRHNPEFTMIEFYQAYADYNDMMDLTEELIRHLAKEV 292 (491)
T ss_pred -CCCCCCCEEECCCHHHHHHHHHHCCCHHHEEHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf -4566855442068789877787627202222487662575543418401021367724799999999999999999996
Q ss_pred -CCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEE
Q ss_conf -8830002234332467732078888656660876532345556232799999999768877876534789876643003
Q gi|254781066|r 148 -NQKIFSFQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKI 226 (355)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 226 (355)
T Consensus 293 ~g~~~~~~~~~~idl~~pf~rit~~eai~~~~g~d~~~~~------~~~~l~~~~~~~g~~~~~~~~~g~l~~~lfe~~v 366 (491)
T PRK00484 293 LGTTKITYGGTEIDFGKPFKRLTMVDAIKEYTGVDFTPQD------EEEEARAIAKELGVEVEKSWGLGKLINELFEEFV 366 (491)
T ss_pred CCCCEEEECCEEECCCCCCEECCHHHHHHHHCCCCCCCCC------CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 1995673287763378995022399999997099876556------7899999999869987887787899999888776
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 62237675443257688886413678778363302202236712256402106999999999999999972888530101
Q gi|254781066|r 227 EPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPID 306 (355)
Q Consensus 227 e~~l~~~~pvfi~~yP~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D 306 (355)
T Consensus 367 e~~l--~~PtFV~d~P~e~sPlak~~~~dp~~~erfdL~i~G~Ei~ng~~el~Dp~~Q~~rf~~q~~~k~~gd~ea~~~D 444 (491)
T PRK00484 367 EPKL--IQPTFITDYPVEISPLAKRHRSNPGFTERFELFIGGRELANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFYD 444 (491)
T ss_pred HHHC--CCCEECCCCCCCCCCCCCCCCCCCCCEEEECEEECCEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 5411--46400136722158755668889670367564348899736503317999999999999999864883233240
Q ss_pred HHHHHHH-CCCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCCC
Q ss_conf 8999986-188963245315999989981559713111585648743
Q gi|254781066|r 307 EDFLACL-TEMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSNQ 352 (355)
Q Consensus 307 ~~fl~al-~G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~~ 352 (355)
T Consensus 445 edfl~Al~yG~PPhgG~GlGiDRLvMlLtg~~sIRdVI~FP~~kp~~ 491 (491)
T PRK00484 445 EDFLRALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPEK 491 (491)
T ss_pred HHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHCCCCCCCCCCC
T ss_conf 99999977799998526556999999983999577501688889999