HHsearch alignment for GI: 254781066 and conserved domain: PRK02983
>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=712.22 Aligned_cols=338 Identities=29% Similarity=0.414 Sum_probs=305.4
Q ss_pred CCCCCCCCCC--CHHHCCCHHH-----------HHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCCCEEEECC
Q ss_conf 9988987478--8312615489-----------99999999999999999879889847821056898544541241024
Q gi|254781066|r 1 MHQIPSQPWW--NRDFHYRRRP-----------FLLKRNMIQSSLREYFVENQFIEIDSMSLQYSPGNETHIRAFSTELI 67 (355)
Q Consensus 1 ~~~~p~~~~~--~~~~~~r~R~-----------~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~g~~~~~~f~t~~~ 67 (355)
T Consensus 742 L~PLP~k~~gl~d~E~RlR~RYLDLr~npe~r~~~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~~GGA~-ARPFlThs- 819 (1099)
T PRK02983 742 LRPLPDKWKGLTDPEARVRARYLDLAVNPEARDLIRARSAVLRAVRETLVAKGFLEVETPILQQIHGGAN-ARPFLTHI- 819 (1099)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC-CCCCCCCC-
T ss_conf 6799976779887767556455651589899999999999999999999878988955754677888756-78530103-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78867832000028589999898744688999886424567775448430020001157765787775578887766641
Q gi|254781066|r 68 IQDHIRKPLYLQTSPEFSCKKLLAAGEEKIFCFAHAWRNGEQGCLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVA 147 (355)
Q Consensus 68 ~~~~~~~~~yL~~SPql~lK~ll~~G~~rvyqig~~FRaE~~~~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~ 147 (355)
T Consensus 820 --na~d~~~YLriAPELflKRLmVGGfeRVFEI~RcFRNEglradHnPEFTmLE~Y~Ay~Dyedmm~ltEeLi~~~a~~~ 897 (1099)
T PRK02983 820 --NAYDLDLYLRIAPELYLKRLCVGGVERVFELGRAFRNEGVDFSHNPEFTLLEAYQAHADYLVMRDLCRELIQNAAQAA 897 (1099)
T ss_pred --CCCCCCCEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf --367866145148089999998648631134325446799998749407999999984789999999999999999995
Q ss_pred CC-CEEC-----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 88-3000-----22343324677320788886566608765323455562327999999997688778765347898766
Q gi|254781066|r 148 NQ-KIFS-----FQNVNCNPFSEPEYITVAEAFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRI 221 (355)
Q Consensus 148 ~~-~~~~-----~~~~~~~~~~~~~~i~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (355)
T Consensus 898 ~G~~v~~~pd~~~~~~~iDls~~w~~~t~~eai~e~~G~di~~~------~~~e~L~~~a~~~gi~~~~~~~~G~lv~eL 971 (1099)
T PRK02983 898 NGEPVVMRPGTDGVLEPVDISGEWPVKTVHEAVSEALGEEIDAD------TPLETLRRLCDAAGIPYLTHWDAGAVVLEL 971 (1099)
T ss_pred HCCEEEECCCCCCCCEEEECCCCCEEEEHHHHHHHHHCCCCCCC------CCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 19657861687788768656999526539999999838878999------999999999997799778999977999999
Q ss_pred HHCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43003622376754432576888864136787783633022022367122564021069999999999999999728885
Q gi|254781066|r 222 LIEKIEPNLGINCCTILDRYPAPESALANIYPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNE 301 (355)
Q Consensus 222 ~~~~ie~~l~~~~pvfi~~yP~~~~plak~~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e 301 (355)
T Consensus 972 ~e~lVE~~l--~~PtFV~DfP~e~sPLarp~~~dp~lAeRfDLvinG~ELgnGysELnDP~eQR~Rf~eQ~~~~~ggD~E 1049 (1099)
T PRK02983 972 YEHLVEDRT--TEPTFYTDFPTSVSPLTRPHRSDPGVAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPE 1049 (1099)
T ss_pred HHHHCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 998527376--677899899722390417789996827877255558997021035169999999999999998679900
Q ss_pred CCHHHHHHHHHHC-CCCCCCEEECCHHHHHHHHHCCCCHHHHCCCCCCCCC
Q ss_conf 3010189999861-8896324531599998998155971311158564874
Q gi|254781066|r 302 TYPIDEDFLACLT-EMPQSSGIAMGFDRLVMLVTGANNINEVIWTPFSQSN 351 (355)
Q Consensus 302 ~~~~D~~fl~al~-G~PPhgG~glGidRLvm~l~g~~~Irdvi~FP~~r~~ 351 (355)
T Consensus 1050 am~~DEdFL~ALeYGmPPhGGialGIDRLVMLLTG~-SIREVIaFPl~kP~ 1099 (1099)
T PRK02983 1050 AMELDEDFLQALEYAMPPTGGLGMGVDRLVMLITGR-SIRETLPFPLAKPR 1099 (1099)
T ss_pred HHHCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCC-CHHHHCCCCCCCCC
T ss_conf 233217899984318997364754499999996299-75987438787998