HHsearch alignment for GI: 254781066 and conserved domain: PRK05159
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=587.74 Aligned_cols=291 Identities=20% Similarity=0.323 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999987988984782105-6898544541241024788678320000285899998987446889
Q gi|254781066|r 19 RPFLLKRNMIQSSLREYFVENQFIEIDSMSLQY-SPGNETHIRAFSTELIIQDHIRKPLYLQTSPEFSCKKLLAAGEEKI 97 (355)
Q Consensus 19 R~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~g~~~~~~f~t~~~~~~~~~~~~yL~~SPql~lK~ll~~G~~rv 97 (355)
T Consensus 134 ~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~l~~~~~eGg--a~~f~~-----~~~~~~~yL~~Spqly~q~li~~G~~rv 206 (434)
T PRK05159 134 QAIFKIRSEVLRAFREFLYEEGFTEIFTPKIVATGTEGG--TELFPV-----KYFEKEAFLAQSPQLYKQMMMAAGFERV 206 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC--CCCCCE-----EECCCEEEECCCCHHHHHHHHHCCCCCE
T ss_conf 999999999999999999877919997874325678875--565861-----3127533414683799999876356855
Q ss_pred HHHHHHHCCCCCC-CCCCCCEEEECEEECCCCHHHHHHHHHHHHHHHHHHHCCCE---ECCCCCCC-CCCCCCCCCCHHH
Q ss_conf 9988642456777-54484300200011577657877755788877666418830---00223433-2467732078888
Q gi|254781066|r 98 FCFAHAWRNGEQG-CLHQPEFTMLEWYRAHESYEQLMKDCMNIIRCAAEVANQKI---FSFQNVNC-NPFSEPEYITVAE 172 (355)
Q Consensus 98 yqig~~FRaE~~~-~rHlpEFtmLE~e~af~d~~dlm~~~E~li~~~~~~~~~~~---~~~~~~~~-~~~~~~~~i~~~e 172 (355)
T Consensus 207 feI~~~FR~E~~~t~RH~pEFT~lE~e~af~d~~d~m~~~E~li~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~rit~~e 286 (434)
T PRK05159 207 FEIGPAFRAEEHNTTRHLNEAISIDVEMGFIDEEDVMDLLENLLKYVYEDVAENCEKELELLGIELPVPETPIPRITYDE 286 (434)
T ss_pred EEECCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCEEEHHH
T ss_conf 99660102365875445356765666631068999999999999999999986564778635865566799864778999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCHHHHHH-CCC
Q ss_conf 6566608765323455562327999999997688778765347898766430036223767544325768888641-367
Q gi|254781066|r 173 AFARYANIDLGTTLDNPDQPDRHLLYLQAQQAGIRVAHDDTWSDIFSRILIEKIEPNLGINCCTILDRYPAPESAL-ANI 251 (355)
Q Consensus 173 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ie~~l~~~~pvfi~~yP~~~~pl-ak~ 251 (355)
T Consensus 287 ai~~l------------------------~~~~~~~----~~g~dl~~~~e~~l~~~~~~~~~~fI~d~P~~~~pfy~~~ 338 (434)
T PRK05159 287 AIEIL------------------------KSKGVEI----SWGDDLDTEGERLLGKYVKESDFYFITDWPTEIRPFYTMP 338 (434)
T ss_pred HHHHH------------------------HHCCCCC----CCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCC
T ss_conf 99999------------------------8519987----8555537899999999847589889989970008654677
Q ss_pred CCCCCCCCCCCEEEECCEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCCCEEECCHHHHH
Q ss_conf 877836330220223671225640210699999999999999997288853010189999861-8896324531599998
Q gi|254781066|r 252 YPADPRFTKRFELYACNIELCNACDELLDPIEQRHRFEKEMQEKKKIYNETYPIDEDFLACLT-EMPQSSGIAMGFDRLV 330 (355)
Q Consensus 252 ~~~~~~va~rfdl~i~G~El~ng~~El~d~~~q~~rf~~q~~~k~~~~~e~~~~D~~fl~al~-G~PPhgG~glGidRLv 330 (355)
T Consensus 339 ~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~~~~~~-----g~~~~~~---~~yl~al~yG~PP~gG~glGiDRLv 410 (434)
T PRK05159 339 YEDDPEITKSFDLMYRGLEITSGAQRIHDYDMLVESIKEK-----GLNPESF---EFYLEAFKYGMPPHAGWGLGLERLT 410 (434)
T ss_pred CCCCCCEEEEEEEEECCEEEEEEEEECCCHHHHHHHHHHC-----CCCHHHH---HHHHHHHHCCCCCCCEEEEHHHHHH
T ss_conf 7888320014326776699843101117899999999974-----9898999---9999996679998755878799999
Q ss_pred HHHHCCCCHHHHCCCCCCCCCC
Q ss_conf 9981559713111585648743
Q gi|254781066|r 331 MLVTGANNINEVIWTPFSQSNQ 352 (355)
Q Consensus 331 m~l~g~~~Irdvi~FP~~r~~~ 352 (355)
T Consensus 411 m~l~g~~sIrdvi~FPr~~~rl 432 (434)
T PRK05159 411 MKLLGLENVREAVLFPRDRTRL 432 (434)
T ss_pred HHHCCCCCHHEEECCCCCCCCC
T ss_conf 9981999665481488998989